Spatial distribution of phytoplankton in Spring 2004 along a transect in the eastern part of the North Sea

We report the results from a 250 km long transect, from the Danish coast to the North Sea at 55°30′ N, which was sampled every 32 km in order to study the composition and distribution of phytoplankton, and their dependence on the distance from the coast, depth and other environmental factors. Altogether 144 species of algae were identified by light, epifluorescence and electron microscopy. Some ecological preferences were found on the basis of measured environmental parameters and compared with the literature. Possible controlling mechanisms for the distribution patterns of the plankton algae were analyzed by multivariate statistics. Only distance from the coast was found to be a significant factor for algal distribution along the transect. Three main areas of the transect were found: the coastal, middle and oceanic areas. Diatoms, mainly the centric ones, were the most abundant group of algae. The other less abundant groups were Dinophyceae, Dictyochophyceae, Prasinophyceae and Chlorophyceae. The pattern of distribution of diatoms and dinophytes along the transect was more or less similar, with larger numbers of cells found close to both the eastern and western parts of the transect, although the species composition was different. Some species were found to prefer coastal waters, other species were characterized as oceanic, and several species were found at all stations. Porosira glacialis showed an atypical distribution along the transect, with highest abundances at both coastal and oceanic stations.     

An optimized method for automated analysis of algal pigments by HPLC

A recent development in algal pigment analysis by high-performance liquid chromatography (HPLC) is the application of automation. An optimization of a complete sampling and analysis protocol applied specifically in automation has not yet been performed. In this paper we show that automation can only be successful if the various methodological aspects of the sampling and analysis protocol are considered in coherence. We introduce an optimized protocol that involves freeze-drying of the sample, subsequent extraction in 90% acetone and the application of water-packing during analysis. The method was evaluated on both natural plankton populations and a broad spectrum of microalgal cultures: Thalassiosira weisflogii (Bacillariophyceae), Emiliania huxleyi (Prymnesiophyceae), Phaeocystis globosa and Phaeocystis antarctica (Prymnesiophyceae) and Pyramimonas sp. (Prasinophyceae). Whereas pigment extracts were unstable in methanol, with recorded chlorophyll a losses from 10% to 60% per day, pigment degradation rates in acetone were generally less than 1% over 18 h storage in the autosampler (4 °C). In addition, it was found that the extraction efficiency of acetone significantly increased upon freeze-drying prior to extraction. Increases as high as 50–60% were measured in P. antarctica. The application of water-packing of the sample during injection resulted in improved peak shape and peak separation, without diluting the pigment concentrations. Automation is especially beneficial for application in the field, when mixed algal assemblages and low biomass put a high demand on the sensitivity as well as reproducibility of the method.     

Plankton metabolism and bacterial growth efficiency in offshore waters along a latitudinal transect between the UK and Svalbard

Euphotic zone gross primary production, community respiration and net community production were determined from in vitro changes of dissolved oxygen, and from in vivo INT reduction capacity fractionated into two size classes, in offshore waters along a latitudinal transect crossing the North, Norwegian and Greenland Seas between the UK and Svalbard. Rates of gross primary production were higher and more variable than community respiration, so net autotrophy prevailed in the euphotic zone with an average net community production of 164±64 mmol O₂ m⁻² d⁻¹. Respiration seemed to be mainly attributed to large eukaryotic cells (>0.8 µm) with smaller cells, mainly bacteria, accounting for a mean of 25% (range 5–48%) of community respiration. Estimates of bacterial growth efficiency were very variable (range 7–69%) due to uncoupling between bacterial respiration and production. Larger cells tended to contribute more towards total respiration in communities with high gross primary production and low community respiration, while bacteria contributed more towards total respiration in communities with lower gross primary production, typical of microbial-dominated systems. This suggests that community respiration is related to the size structure of the plankton community.     

Integrated biochemical,molecular genetic,and bioacoustical analysis of mesoscale variability of the euphausiid Nematoscelis difficilis in the California Current

Integrated assessment of the euphausiid Nematoscelis difficilis (Crustacea; Euphausiacea) and the zooplankton assemblage of the California Current was designed to investigate individual, population, and community responses to mesoscale variability in biological and physical characters of the ocean. Zooplankton samples and observational data were collected along a cross-shelf transect of the California Current in association with the California Cooperative Fisheries Investigations (CalCOFI) Survey during October 1996. The transect crossed three domains defined by temperature and salinity: nearshore, mid-Current, and offshore. Individual N. difficilis differed in physiological condition along the transect, with higher size-corrected concentrations of four central metabolic enzymes (citrate synthetase, hexokinase, lactate dehydrogenase (LDH), and phosphoglucose isomerase (PGI)) for euphausiids collected in nearshore waters than in mid-Current and offshore waters. There was little variation in the DNA sequences of the genes encoding PGI and LDH (all DNA changes were either silent or heterozygous base substitutions), suggesting that differences in enzyme concentration did not result from underlying molecular genetic variation. The population genetic makeup of N. difficilis varied from sample to sample based on haplotype frequencies of mitochondrial cytochrome oxidase I (mtCOI; P=0.029). There were significant differences between pooled nearshore and offshore samples, based on allele frequencies at two sites of common substitutions in the mtCOI sequence (P=0.020 and 0.026). Silhouette and bioacoustical backscattering measurements of the zooplankton assemblage of the top 100 m showed marked diel vertical migration of the scattering layer, of which euphausiids were a small but significant fraction. The biochemical and molecular assays are used as indices of complex physiological (i.e., growth and condition) and genetic (i.e., mortality) processes; the bioacoustical observations provide insight into the ecosystem context for the single-species measurements. All data are intended for integration into predictive models of secondary production and biomass concentration in the ocean.     

Phytoplankton community structure in the Arabian Sea during and after the SW monsoon, 1994

Diatoms, dinoflagellates, coccolithophores, nanoflagellates, picophytoplankton and procaryote algae (Synechococcus spp. and prochlorophytes) were quantified by microscopy and flow cytometry, and their biomass determined, at 12 stations along a 1600 km transect across the Arabian Sea at the end of the SW monsoon in September, and during the inter-monsoon period of November/December 1994. The transect spanned contrasting oceanic conditions that varied from seasonally eutrophic, upwelling waters through mesotrophic, downwelling waters to permanently oligotrophic, stratified waters. The overall diversity of diatoms, dinoflagellates and coccolithophores along the transect was not significantly different between the SW monsoon and inter-monsoon. However, diatoms showed greatest diversity during the SW monsoon and coccolithophores were most diverse during the inter-monsoon. Integrated phytoplankton standing stocks during the SW monsoon ranged from 3 to 9 g C m^-2 in the upwelling eutrophic waters, from 3 to 5 g C m^-2 in downwelling waters, and from 1 to 2 g C m^-2 in oligotrophic waters. Similar phytoplankton standing stocks were found in oligotrophic waters during the inter-monsoon, but were ca. 40% lower compared to the SW monsoon in the more physically dynamic waters. Phytoplankton abundance and biomass was dominated by procaryote taxa. Synechococcus spp. were abundant (often >10⁸ cells l^-1) during both the SW monsoon and inter-monsoon, where the nitrate concentration was ⩾0.1 μ mol l^-1, and often dominated the phytoplankton standing stocks. Prochlorophytes were restricted to oligotrophic stratified waters during the SW monsoon period but were found at all stations along the transect during the inter-monsoon, dominating the phytoplankton standing stocks (>40%) in the oligotrophic region during this period. Of the nano- and micro-phytoplankton, only diatoms contributed significantly to phytoplankton standing stocks, and then only in near-shore upwelling waters during the SW monsoon. There were significant changes in the temporal composition of the phytoplankton community. In nearshore waters a mixed community of diatoms and Synechococcus spp. dominated during the SW monsoon. This gave way to a community dominated by Synechococcus spp. in the intermonsoon. In the downwelling zone, a Synechococcus spp. dominated community was replaced by a mixed procaryote community of Synechococcus spp. and prochlorophytes. In the oligotrophic stratified waters, the mix of procaryote algae was replaced by one dominated by prochlorophytes alone.     

Abundance,distribution, and feeding patterns of juvenile coho salmon (Oncorhynchus kisutch) in the Juan de Fuca Eddy

The Juan de Fuca Eddy is a seasonal, counter-clockwise gyre off the mouth of the Strait of Juan de Fuca between Washington, USA and British Columbia, Canada that may provide favorable feeding habitat for juvenile coho salmon (Oncorhynchus kisutch) during their early marine existence. In late September 2002, physical and biological sampling was conducted along two transects of the eddy region. Surface rope trawling was conducted to capture juvenile salmon and other nekton, along with bongo and neuston net tows to examine potential mesozooplanktonic salmon prey. Presence of the Juan de Fuca Eddy was confirmed with vertical water profiles. In addition, nutrient and chlorophyll a concentrations collected from 3-m depth were within the range observed in previous studies within the eddy region. In the mesozooplankton community, euphausiids, chaetognaths, and decapod megalopae were common. In the diet of juvenile coho salmon, euphausiids and decapod megalopae were dominant by percent number, and larval and juvenile fish were dominant by percent weight. Feeding intensity (percent body weight) based on stomach contents was variable, but not significantly different among stations. To compare the Juan de Fuca Eddy region with an upwelling area, we sampled along a transect off La Push (LP), Washington, USA which is south of the eddy. The eddy region was found to be less productive than the LP transect. Nutrients were lower, chlorophyll a concentrations were higher, and zooplankton abundance was generally higher along the LP transect than in the eddy region. In addition, more juvenile coho salmon were captured from the LP transect than the eddy region. Prey items in stomachs of salmon from the LP transect were heterogeneous compared to those from the eddy region. Feeding intensity along the LP transect was slightly lower and more variable than in the eddy region, and differences in feeding intensity among LP stations were significant. In addition, feeding intensities among stations nested within regions were significantly different.     

热带东北印度洋海域管水母类的群落结构特征

管水母是海洋浮游动物中的重要类群,通常可作为海流或水团的指示种,其分布受温度、盐度和食物的影响。本文根据2011年4月在东印度洋海域(5°S~5°N,80°~98.5°E)26个站的调查资料,分析了管水母种类组成、丰度分布和群落结构特征。共鉴定管水母37种,以热带大洋广布种和赤道种为主,其中扭形爪室水母Chelophyes contorta、巴斯水母Bassia bassensis、双小水母Nanomia bijuga和短深杯水母Abylopsis eschscholtzi是调查海域的优势种。依据调查站位设置及环境特征,将调查海域分东部断面、赤道断面和西部断面3个区域。各个调查站种数变化范围为2~14种,东部和西部断面的种类较丰富,而赤道断面近岸区种数低,离岸区种数增多。管水母的平均丰度为(1.04±0.58)个/m3,分布不均匀,东部断面和西部断面的丰度比赤道断面高,特别是赤道断面近岸区丰度在1.0个/m3以下。调查海区的管水母属于比较典型的热带大洋性生态类群。群落结构分析表明,东部和西部断面的群落结构相似度较高,二者与赤道断面的相似度均较低。调查海域管水母种类和丰度的分布受水文和生物环境因子的综合影响。双小水母Nanomia bijuga可作为东部断面和赤道断面近岸区沿岸水团的指示种,锥体浅室水母Lensia conoides和褶玫瑰水母Rosacea plicata可作为西部断面100m以下涌升水团的指示种。     

Phylogenetic analysis of bacterial community in deep-sea sediment from the western Pacific “warm pool”

A depth profile of bacterial community structure in one deep-sea sediment core of the western Pacific ＂warm pool＂ （WP） was investigated and compared with that in a sediment sample from the eastern Pacific （EP） by phylogenetic analysis of 16S rDNA fragments. Five bacterial 16S rDNA clone libraries were constructed, and 133 clones with different restriction fragment length polymorphism （RFLP） patterns were sequenced. A phylogenetic analysis of these sequences revealed that the bacterial diversity in a sample from the WP was more abundant than that in the EP sample. The bacterial population in the sediment core of WP was composed of eight major lineages of the domain bacteria. Among them the γ-Proteobacteria was the predominant and most diverse group in each section of WP sediment core, followed by the α-Proteobacteria. The genus Colwellia belonging to γ-Proteobacteria was predominant in this sample. The shift of bacterial communities among different sections of the WP sediment core was δ-, ε-Proteobacteria, and Cytopahga-Flexibacteria-Bacteroides （CFB） group. The ratios between them in the bacterial communities all showed inversely proportional to the depth of sediment. The sequences related to sulphate reducing bacteria （SRB） were detected in every section. The bacterial community structure in this sediment core might be related to the environmental characteristics of the surface seawater of the western Pacific WP.     

Zooplankton structure and grazing in the Atlantic sector of the Southern Ocean in late austral summer 1993: Part 1. Ecological zonation

The composition, distribution, abundance, biomass and size structure of mesozooplankton, collected using Bongo nets in the top 300 m layer along a transect between the Antarctic continent and Cape Town, were investigated during the second South African Antarctic Marine Ecosystem Study (SAAMES II) in Jan.–Feb. 1993. Small (<10 mm) and medium (20–50 mm) size groups of zooplankton consistently dominated across the Southern Ocean. The highest zooplankton densities were recorded at the Antarctic Polar Front (APF) and at the Subtropical Convergence (STC). Minor peaks in zooplankton densities were observed in the southern vicinity of the Subantarctic Front (SAF) and APF. Elevated zooplankton stocks were also found within the Marginal Ice Zone (MIZ) and the Polar Frontal Zone. The lowest densities were recorded in the permanently open zone (MIZ–APF) and in the Subantarctic zone (SAF–STC). Copepods were generally important along the entire transect and formed the bulk of zooplankton stock within the MIZ and in the Polar Frontal Zone (APF–SAF), accounting for at least 40–95% of total abundance and biomass. Euphausiids were also a prominent group along the transect. Their contribution was highest (up to 80% of total biomass) between the MIZ and the APF, mainly because of the occurrence of swarms of the Antarctic krill Euphausia superba. Tunicates, Pyrosoma sp. and Salpa fusiformis, were found in great numbers only in the region of the STC and further north, while Salpa thompsoni was abundant at the southern boundary of the APF. Chaetognaths dominated samples numerically and by mass in the Subantarctic Zone. Results obtained from cluster and ordination analyses show that zooplankton community structure was well correlated with the position of various biogeographical zones separated by the main frontal systems of the Southern Ocean. Two major groupings of stations, separated by the SAF, were identified in these analyses. This front separated the Antarctic and the subantarctic/subtropical assemblages, confirming its important role as a biogeographical boundary.     

Trophic ecology and vertical patterns of carbon and nitrogen stable isotopes in zooplankton from oxygen minimum zone regions

The unique physical and biogeochemical characteristics of oxygen minimum zones (OMZs) influence plankton ecology, including zooplankton trophic webs. Using carbon and nitrogen stable isotopes, this study examined zooplankton trophic webs in the Eastern Tropical North Pacific (ETNP) OMZ. δ¹³C values were used to indicate zooplankton food sources, and δ¹⁵N values were used to indicate zooplankton trophic position and nitrogen cycle pathways. Vertically stratified MOCNESS net tows collected zooplankton from 0 to 1000 m at two stations along a north-south transect in the ETNP during 2007 and 2008, the Tehuantepec Bowl and the Costa Rica Dome. Zooplankton samples were separated into four size fractions for stable isotope analyses. Particulate organic matter (POM), assumed to represent a primary food source for zooplankton, was collected with McLane large volume in situ pumps.The isotopic composition and trophic ecology of the ETNP zooplankton community had distinct spatial and vertical patterns influenced by OMZ structure. The most pronounced vertical isotope gradients occurred near the upper and lower OMZ oxyclines. Material with lower δ¹³C values was apparently produced in the upper oxycline, possibly by chemoautotrophic microbes, and was subsequently consumed by zooplankton. Between-station differences in δ¹⁵N values suggested that different nitrogen cycle processes were dominant at the two locations, which influenced the isotopic characteristics of the zooplankton community. A strong depth gradient in zooplankton δ¹⁵N values in the lower oxycline suggested an increase in trophic cycling just below the core of the OMZ. Shallow POM (0–110 m) was likely the most important food source for mixed layer, upper oxycline, and OMZ core zooplankton, while deep POM was an important food source for most lower oxycline zooplankton (except for samples dominated by the seasonally migrating copepod Eucalanus inermis). There was no consistent isotopic progression among the four zooplankton size classes for these bulk mixed assemblage samples, implying overlapping trophic webs within the total size range considered.     

Spatial variability of intertidal rocky shore assemblages in the northwest coast of Portugal

The spatial variability of rocky shore assemblages of the northwest Portuguese coast was studied in a total of 12 transects, visited twice between March and August 2003. Each transect was positioned from the upper to the lower shore and four replicate samples (50 × 50 cm) were taken at each visually identified assemblage. Multivariate analysis was used to test the null hypothesis of no significant differences among assemblages located on different heights along the transect and among assemblages located at the same height on different transects. The distribution pattern of organisms along the height was not consistent across transects and significant variability could be found in assemblages located at the same height on the shore. Globally, the variability from the lower to the upper shore (vertical axis) was larger than from transect to transect (horizontal axis) but the distribution pattern along height was clearer in sheltered transects than in exposed ones. The heterogeneity in composition between the visually identified assemblages, within the same transect, was, however, the major source of variability in the study area. In the rocky intertidal northwest coast of Portugal, where tidal amplitude is broad and extremely wave-exposed sites are scarce, height above chart datum was the most important factor determining the distribution and species composition of the assemblages. However, variability along the horizontal axis was also significant and should be considered in studies of spatial patterns of distribution of organisms within this area.     

Spatial–temporal distribution of phytoplankton pigments in relation to nutrient status in Jiaozhou Bay,China

We conducted studies of phytoplankton and hydrological variables in a semi-enclosed bay in northern China to understand the spatial–temporal variability and relationship between these variables. Samples were collected during seven cruises in Jiaozhou Bay from November 2003 to October 2004, and were analyzed for temperature, nutrients and phytoplankton pigments. Pigments from eight possible phytoplankton classes (Diatoms, Dinoflagellates, Chlorophyceae, Prasinophyceae, Chrysophyceae, Haptophyceae, Cryptophyceae and Caynophyceae) were detected in surface water by high performance liquid chromatography (HPLC). Phytoplankton pigment and nutrient concentrations in Jiaozhou Bay were spatially and temporally variable, and most of them were highest in the northern and eastern parts of the sampling regions in spring (May) and summer (August), close to areas of shellfish culturing, river estuaries, dense population and high industrialization, reflecting human activities. Chlorophyll a was recorded in all samples, with an annual mean concentration of 1.892 μg L⁻¹, and fucoxanthin was the most abundant accessory pigment, with a mean concentration of 0.791 μg L⁻¹. The highest concentrations of chlorophyll a (15.299 μg L⁻¹) and fucoxanthin (9.417 μg L⁻¹) were observed in May 2004 at the station close to the Qingdao Xiaogang Ferry, indicating a spring bloom of Diatoms in this area. Although chlorophyll a and other biomarker pigments showed significant correlations, none of them showed strong correlations with temperature and nutrients, suggesting an apparent de-coupling between the pigments and these hydrological variables. The nutrient composition and phytoplankton community composition of Jiaozhou Bay have changed significantly in the past several decades, reflecting the increasing nutrient concentrations and decline of phytoplankton cell abundance. The unchanged total chlorophyll a levels indicated that smaller species have filled the niche vacated by the larger species in Jiaozhou Bay, as revealed by our biomarker pigment analysis.     

Evaluation of the impacts of land-based contaminants on the benthic faunas of Jakarta Bay,Indonesia

To evaluate the impact of land-based contaminants on benthic faunas, as part of the Land-Ocean Contamination Study (LOCS), a study transect was established in Jakarta Bay, Indonesia during the 1996 southeasterly monsoon. The transect extended 72 km between the city's main port, Tanjung Priok, and the Pilau Seribu Island chain in the Java Sea. The dissolved concentrations of Pb, Cu, Zn, Cr and Ni in seawater, in suspended particulate matter (SPM) and surficial sea bed sediments were measured along the transect at nine sites. In addition, metal concentrations were measured in tissues of the corals Goniopora lobata and Lobophyllia hemprichii at five sites, and of the green mussel, Perna viridis at six sites. An assessment of the impact of contaminants on the faunas was made using a biomarker approach, employing coral community analysis and lysosomal stability with Perna viridis. The results of the study showed two main trends. The distributions of metals dissolved in seawater, in SPM, and in the coral and mussel tissues were similar, and failed to show a consistent graded response from inshore to offshore sites. This suggests that the concentration of metals in waters is the primary route for metal uptake by the coral and mussel tissues. By way of contrast, a clear offshore increase in coral generic diversity, coral cover, coral colony numbers and neutral-red retention time (lysosomal stability) was observed, suggesting increasing nearshore stress. Whilst the coral community stucture may reflect the seasonally-averaged metal distributions in the bay (shown by the metal content of sea bed sediments which increase shorewards), it is more likely that the coral community structure and lysosomal biomarker are responding principally to other nearshore stresses, such as sediment and nutrient loading of water (sewage) or, more likely, organic contaminants such as oils and other hydrocarbons.     

Phylogenetic diversity of bacterial biofilms covering the settlement substrates of nona-porous abalones(Haliotis diversicolor supertexta)

The settlement substrates of nona-porous abalones (Haliotis diversicolor supertexta) are covered with biofilms in which several types of microorganisms coexist and interact. These microorganisms are usually important causes of juvenile abalone disease as well as organisms useful in promoting abalones’ adhesion. The bacterial community structure of the biofilms remains unclear. The aim of this research was to determine the genetic diversity and phylogenetic affiliation of the biofilm bacteria. Total DNA of b...     

Parallel structure among environmental gradients and three trophic levels in a subarctic estuary

We assessed spatial and temporal variability in the physical environment of a subarctic estuary, and examined concurrent patterns of chlorophyll α abundance (fluorescence), and zooplankton and forage fish community structure. Surveys were conducted in lower Cook Inlet, Alaska, during late July and early August from 1997 through 1999. Principle components analysis (PCA) revealed that spatial heterogeneity in the physical oceanographic environment of lower Cook Inlet could be modeled as three marine-estuarine gradients characterized by temperature, salinity, bottom depth, and turbidity. The gradients persisted from 1997 through 1999, and PCA explained 68% to 92% of the variance in physical oceanography for each gradient-year combination. Correlations between chlorophyll α abundance and distribution and the PCA axes were weak. Chlorophyll was reduced by turbidity, and low levels occurred in areas with high levels of suspended sediments. Detrended correspondence analysis (DCA) was used to order the sample sites based on species composition and to order the zooplankton and forage fish taxa based on similarities among sample sites for each gradient-year. Correlations between the structure of the physical environment (PCA axis 1) and zooplankton community structure (DCA axis 1) were strong (r = 0.43-0.86) in all years for the three marine-estuarine gradients, suggesting that zooplankton community composition was structured by the physical environment. The physical environment (PCA) and forage fish community structure (DCA) were weakly correlated in all years along Gradient 2, defined by halocline intensity and surface temperature and salinity, even though these physical variables were more important for defining zooplankton habitats. However, the physical environment (PCA) and forage fish community structure (DCA) were strongly correlated along the primary marine-estuarine gradient (#1) in 1997 (r = 0.87) and 1998 (r = 0.82). The correlation was poor (r = 0.32) in 1999, when fish community structure changed markedly in lower Cook Inlet. Capelin (Mallotus villosus), walleye pollock (Theragra chalcogramma), and arrowtooth flounder (Atheresthes stomias) were caught farther north than in previous years. Waters were significantly colder and more saline in 1999, a La Niña year, than in other years of the study. Interannual fluctuations in environmental conditions in lower Cook Inlet did not have substantial effects on zooplankton community structure, although abundance of individual taxa varied significantly. The abundance and distribution of chlorophyll α, zooplankton and forage fish were affected much more by spatial variability in physical oceanography than by interannual variability. Our examination of physical-biological linkages in lower Cook Inlet supports the concept of “bottom-up control,” i.e., that variability in the physical environment structures higher trophic-level communities by influencing their distribution and abundance across space.     

Microzooplankton composition,biomass and grazing rates along the WOCE SR3 line between Tasmania and Antarctica

Microzooplankton species composition and grazing rates on phytoplankton were investigated along a transect between ∼46 and 67°S, and between 140 and 145°E. Experiments were conducted in summer between November 2nd and December 14th in 2001. The structure of the microbial food web changed considerably along the transect and was associated with marked differences in the physical and chemical environment encountered in the different water masses and frontal regions. On average microzooplankton grazing experiments indicated that 91%, 102%, and 157%, (see results) of the phytoplankton production would be grazed in the <200, <20 and <2 μm size fractions, respectively, indicating microzooplankton grazing was potentially constraining phytoplankton populations (<200 μm) along most of the transect. Small ciliates in general and especially oligotrich species declined in importance from the relatively warm, Southern Subtropical Front waters (6.8 μg C/L) to the colder waters of the southern branch of the Polar Front (S-PF), (∼0.5 μg C/L) before increasing again near the Antarctic landmass. Large changes in microzooplankton dominance were observed, with heterotrophic nanoflagellates (HNF), ciliates and larger dinoflagellates having significant biomass in different water masses. HNF were the dominant grazers when chlorophyll a was low in areas such as the Inter-Polar Frontal Zone (IPFZ), while in areas of elevated biomass such as the S-PF and Southern Antarctic Circumpolar Current (SACC), a mix of copepod nauplii and large heterotrophic and mixotrophic dinoflagellates tended to dominate the grazing community. In the S-PF and SACC water masses the tight coupling observed between the microzooplankton grazers and phytoplankton populations over most of the rest of the transect was relaxed. In these regions grazing was low on the >20 μm size fraction of chlorophyll a, which dominated the biomass, while smaller diatoms and nanoplankton in the <20 μm size fraction were still heavily grazed. The lack of grazing pressure on large phytoplankton contributes to this region's potential to export carbon with larger cells known to have higher sinking rates.     

Calcification depth and spatial distribution of Thoracosphaera heimii cysts: Implications for palaeoceanographic reconstructions

For the optimal use in palaeoceanographic studies of the stable oxygen isotopic signal and elemental composition of the calcareous photosynthetic dinoflagellate Thoracosphaera heimii, it is essential to gain detailed information about its calcification depth and spatial distribution. We therefore studied the vertical and horizontal distribution patterns of T. heimii in the upper water column (0–200 m) along three transects: an inshore–offshore gradient off Cape Blanc (CB), a south–north transect from CB to the Portuguese coast and a north–south transect off Tanzania. We compared concentrations of living cysts (cells with cell content) with chlorophyll-a, salinity and temperature measurements at the sampling depth. In order to explore the seasonal variability in cyst production, three transect off CB were sampled at three different times of the year.Living T. heimii cysts were found in the upper 160 m of the water column with highest concentrations in the photic zone indicating that the calcification of T. heimii occurs in the upper part of the water column. Maximal abundances of living cysts were found relatively often in or just above the deep chlorophyll maximum (DCM), the depth of which varies regionally from about 20–40 m off CB to about 80 m off Tanzania and along the transect from CB to the Portuguese Coast. However, there was no significant correlation at the 95% confidence level between the cyst concentrations and temperature, salinity and chlorophyll-a concentrations at the sampling depths observed.In both the Atlantic and Indian Oceans, the highest abundances of T. heimii were observed in regions where the upper water masses contained relatively low nutrient concentrations that are influenced only sporadically, or not at all, by enhanced photic zone mixing related to the presence of upwelling cells or river outflow plumes at or close to the sampling sites. The seasonal production of cysts by T. heimii appears to be negatively related to the presence of upwelling filaments across the sampling sites. Our study suggests that turbulence of the upper water masses is a major environmental factor influencing T. heimii production.     

The seasonal succession of zooplankton in the Southern Ocean south of Australia,part I: The seasonal ice zone

Between November 2001 and March 2002 an Australian/Japanese collaborative study completed six passes of a transect line in the Seasonal-Ice Zone (south of 62°S) along 140°E. Zooplankton samples were collected with a NORPAC net on 22–28 November, and a Continuous Plankton Recorder on 10–15 January, 11–12 February, 19–22 February, 25–26 February, and 10–11 March. Zooplankton densities were lowest on 22–28 November (ave=61 individuals (ind) m⁻³), when almost the entire transect was covered by sea ice. By 10–15 January sea surface temperature had increased by ∼2 °C across the transect line, and the study area was ice-free. Total zooplankton abundance had increased to maximum levels for the season (ave=1301 ind m⁻³; max=1979 ind m⁻³), dominated by a “Peak Community” comprising Oithona similis, Ctenocalanus citer, Clausocalanus laticeps, foraminiferans, Limacina spp., appendicularians, Rhincalanus gigas and large calanoid copepodites (C1–3). Total densities declined on each subsequent transect, returning to an average of 169 ind m⁻³ on 10–11 March. The seasonal density decline was due to the decline in densities of “Peak Community” taxa, but coincided with the rise of Euphausia superba larvae into the surface waters, increased densities of Salpa thompsoni, and an increased contribution of C4 to adult stages to the populations of Calanoides acutus, Calanus propinquus and Calanus simillimus. The seasonal community succession appeared to be influenced by the low sea ice extent and southward projection of the ACC in this region. The relatively warm ACC waters, together with low krill biomass, favoured high densities of small grazers during the January/February bloom conditions. The persistence of relatively warm surface waters in March and the seasonal decrease in chlorophyll a biomass provided favorable conditions for salps, which were able to penetrate south of the Southern Boundary.     

Monsoonal influence on the distribution of phytoplankton pigments in the Arabian Sea

Variations in the distribution of chemotaxonomic pigments were monitored in the Arabian Sea and the Gulf of Oman at the end of the SW monsoon in September 1994 and during the inter-monsoon period in November/December 1994 to determine the seasonal changes in phytoplankton composition. The Gulf of Oman was characterized by sub-surface chlorophyll maxima at 20-40 m during both seasons, and low levels of divinyl chlorophyll a indicated that prochlorophytes did not contribute significantly to the total chlorophyll a. Prymnesiophytes (19′-hexanoyloxyfucoxanthin), diatoms (fucoxanthin) and chlorophyll b containing organisms accounted for most of the phytoplankton biomass in September, while prymnesiophytes dominated in November/December. In the Arabian Sea in September, high total chlorophyll a concentrations up to 1742 ng l^-1 were measured in the coastal upwelling region and a progressive decline was monitored along the 1670 km offshore transect to oligotrophic waters at 8°N. Divinyl chlorophyll a was not detected along this transect except at the two most southerly stations where prochlorophytes were estimated to contribute 25–30% to the total chlorophyll a. Inshore, the dominance of fucoxanthin and/or hexanoyloxyfucoxanthin indicated that diatoms and prymnesiophytes generally dominated the patchy phytoplankton community, with zeaxanthin-containing Synechococcus also being important, especially in surface waters. At the southern oligotrophic localities, Synechococcus and prochlorophytes dominated the upper 40 m and prymnesiophytes were the most prominent at the deep chlorophyll maximum. During the inter-monsoon season, total chlorophyll a concentrations were generally half those measured in September and highest levels were found on the shelf (1170 ng l^-1). Divinyl chlorophyll a was detected at all stations along the Arabian Sea transect, and we estimated that prochlorophytes contributed between 3 and 28% to the total chlorophyll a, while at the two oligotrophic stations this proportion increased to 51–52%. While procaryotes were more important in November/December than September, eucaryotes still accounted for >50% of the total chlorophyll a. Pigment/total chlorophyll a ratios indicated that 19′-hexanoyloxyfucoxanthin-containing prymnesiophytes were the dominant group, although procaryotes accounted for 65% at the two southerly oligotrophic stations.     

Phytoplankton community structures in shelf and oceanic waters off southeast Brazil (20°–25°S), as determined by pigment signatures

The influences of the hydrological features and environmental conditions in the phytoplankton community found in the Campos Basin area in the Atlantic Ocean (20° to 25°S; 42° to 38°W) were studied using HPLC/CHEMTAX pigment analysis. Samples were collected at 72 stations distributed along the 25–3000 m isobaths at two depths during two seasonal periods (rainy and dry). Seven taxonomic groups of phytoplankton were detected (diatoms, dinoflagellates, prasinophytes, cryptophytes, haptophytes, pelagophytes and cyanobacteria). Redundancy analysis showed that the spatial and temporal patterns observed in the distribution of the phytoplanktonic groups were primarily related to variations in the availability of light and nutrients. Nutrient variations were caused by South Atlantic Central Water seasonal intrusions over the continental shelf region. Cyanobacteria predominated in the rainy season, while diatoms, Haptophyceae and Prasinophyceae, were associated with higher nutrient availability in the dry season. In the inner shelf region, diatoms dominated and were associated with increased conditions of turbulence and nutrient availability. Haptophytes and prasinophytes were predominant on the outer shelf and shelf-break regions associated with high nutrient concentrations and availability of light. Prochlorococcus was related to oceanic waters (in both dry and rainy periods) or to low nutrient/strongly stratified shelf waters (rainy period). In contrast, Synechococcus was widely distributed in both the shelf and oceanic regions. Variation in the quality of light between coastal and oceanic waters was probably responsible for the distributions observed. Through HPLC/CHEMTAX pigment analysis we have developed a detailed picture of the influence of hydrological regime on the dynamics of the phytoplankton community in an under-studied shelf/ocean system in the tropical southern Atlantic Ocean.