Degradation of dissolved organic monomers and short-chain fatty acids in sandy marine sediment by fermentation and sulfate reduction

The decay of a wide range of organic monomers (short-chain volatile fatty acids (VFA’s), amino acids, glucose and a pyrimidine) was studied in marine sediments using experimental plug flow-through reactors. The reactions were followed in the presence and absence of 10 mM SO₄²⁻. Degradation stoichiometry of individual monomers (inflow concentration of 6 mM organic C) was traced by measuring organic (VFA’s, amino acids) and inorganic (CO₂, NH₄⁺, SO₄²⁻) compounds in the outflow. Fermentation of amino acids was efficient and complete during passage through anoxic sediment reactors. Aliphatic amino acids (alanine, serine and glutamate) were primarily recovered as CO₂ (24-34%), formate (3-22%) and acetate (41-83%), whereas only ∼1/3 of the aromatic amino acid (tyrosine) was recovered as CO₂ (13%) and acetate (20%). Fermentation of glucose and cytosine was also efficient (78-86%) with CO₂ (30-35%), formate (3%) and acetate (28-33%) as the primary products. Fermentation of VFA’s (acetate, propionate and butyrate), on the other hand, appeared to be product inhibited. The presence of SO₄²⁻ markedly stimulated VFA degradation (29-45% efficiency), and these compounds were recovered as CO₂ (17% for butyrate to 100% for acetate) and acetate (51% and 82% for propionate and butyrate, respectively). When reaction stoichiometry during fermentation is compared with compound depletion during sulfate reduction, the higher proportion CO₂ recovery is consistent with lower acetate and formate accumulation. Our results therefore suggest that fermentation reactions mediate the initial degradation of added organic compounds, even during active sulfate reduction. Fermentative degradation stoichiometry also suggested significant H₂ production, and >50% of sulfate reduction appeared to be fuelled by H₂. Furthermore, our results suggest that fermentation was the primary deamination step during degradation of the amino acids and cytosine.     

Stable carbon isotope discrimination in rice field soil during acetate turnover by syntrophic acetate oxidation or acetoclastic methanogenesis

Rice fields are an important source for the greenhouse gas methane. In Italian rice field soil CH₄ is produced either by hydrogenotrophic and acetoclastic methanogenesis, or by hydrogenotrophic methanogenesis and syntrophic acetate oxidation when temperatures are below and above about 40-45 °C, respectively. In order to see whether these acetate consumption pathways differently discriminate the stable carbon isotopes of acetate, we measured the δ¹³C of total acetate and acetate-methyl as well as the δ¹³C of CO₂ and CH₄ in rice field soil that had been pre-incubated at 45 °C and then shifted to different temperatures between 25 and 50 °C. Acetate transiently accumulated to about 6 mM, which is about one-third of the amount of CH₄ produced, irrespective of the incubation temperature and the CH₄ production pathway involved. However, the patterns of δ¹³C of the CH₄ and CO₂ produced were different at low (25, 30, 35 °C) versus high (40, 45, 50 °C) temperatures. These patterns were consistent with CH₄ being exclusively formed by hydrogenotrophic methanogenesis at high temperatures, and by a combination of acetoclastic and hydrogenotrophic methanogenesis at low temperatures. The patterns of δ¹³C of total acetate and acetate-methyl were also different at high versus low temperatures, indicating the involvement of different pathways of production and consumption of acetate at the two temperature regimes. Isotope fractionation during consumption of the methyl group of acetate was more pronounced at low (α = 1.010-1.025) than at high (α = 1.0-1.01) temperatures indicating that acetoclastic methanogenesis exhibits a stronger isotope effect than syntrophic acetate oxidation. Small amounts of propionate also transiently accumulated and were analyzed for δ¹³C. The δ¹³C values slightly increased (by about 10‰) during production and consumption of propionate, but were not affected by incubation temperature. Collectively, our results showed distinct isotope discrimination for different paths of acetate (and propionate) production and consumption, albeit differences were only small, and discrimination between methanogenic and syntrophic acetate consumption in nature may be difficult to detect.     

Fractionation of stable carbon isotopes during anaerobic production and degradation of propionate in defined microbial cultures

In many anoxic environments propionate is, after acetate, the second most important fermentation product, being degraded further to finally result in CH₄ production. In principle, isotope discrimination can be used to assess the path of organic matter degradation to acetate, CO₂ and CH₄. However, nothing is known about the isotope fractionation in primary and secondary fermentation steps involving propionate, although it is an important precursor of acetate. We therefore studied the degradation of propionate with a syntrophic coculture of Syntrophobacter fumaroxidans and Methanobacterium formicicum. The isotope enrichment factor for propionate degradation to acetate, CO₂ and CH₄ was almost negligible (ε_prop 0.9‰). The fermentative production of propionate was studied in cultures with Opitutus terrae growing on pectin, xylan and starch. These polysaccharides were fermented to acetate, succinate, propionate, H₂ and CO₂. While the δ¹³C value of the initially produced propionate was similar to that of the organic substrates (ca. −28 to −25‰), the δ¹³C value of the other fermentation products was higher. The δ¹³C values of all products generally decreased during the course of fermentation. Finally, a small depletion in ¹³C (ca. 6‰) with respect to the organic substrate was observed for propionate, while the other fermentation products where slightly enriched. Overall, stable carbon isotope discrimination was small during both fermentative production and consumption of propionate in the anaerobic microbial cultures, so that propionate turnover probably only marginally affects isotope fractionation during anaerobic degradation of organic matter.     

Oxygen isotope exchange between H2O and CO2 at elevated CO2 pressures: Implications for monitoring of geological CO2 storage

Traditionally, the application of stable isotopes in Carbon Capture and Storage (CCS) projects has focused on δ¹³C values of CO₂ to trace the migration of injected CO₂ in the subsurface. More recently the use of δ¹⁸O values of both CO₂ and reservoir fluids has been proposed as a method for quantifying in situ CO₂ reservoir saturations due to O isotope exchange between CO₂ and H₂O and subsequent changes in δ¹⁸O_H2O values in the presence of high concentrations of CO₂. To verify that O isotope exchange between CO₂ and H₂O reaches equilibrium within days, and that δ¹⁸O_H2O values indeed change predictably due to the presence of CO₂, a laboratory study was conducted during which the isotope composition of H₂O, CO₂, and dissolved inorganic C (DIC) was determined at representative reservoir conditions (50 °C and up to 19 MPa) and varying CO₂ pressures. Conditions typical for the Pembina Cardium CO₂ Monitoring Pilot in Alberta (Canada) were chosen for the experiments. Results obtained showed that δ¹⁸O values of CO₂ were on average 36.4 ± 2.2‰ (1σ, n = 15) higher than those of water at all pressures up to and including reservoir pressure (19 MPa), in excellent agreement with the theoretically predicted isotope enrichment factor of 35.5‰ for the experimental temperatures of 50 °C. By using ¹⁸O enriched water for the experiments it was demonstrated that changes in the δ¹⁸O values of water were predictably related to the fraction of O in the system sourced from CO₂ in excellent agreement with theoretical predictions. Since the fraction of O sourced from CO₂ is related to the total volumetric saturation of CO₂ and water as a fraction of the total volume of the system, it is concluded that changes in δ¹⁸O values of reservoir fluids can be used to calculate reservoir saturations of CO₂ in CCS settings given that the δ¹⁸O values of CO₂ and water are sufficiently distinct.     

The role of metal sulfates in thermochemical sulfate reduction (TSR) of hydrocarbons: Insight from the yields and stable carbon isotopes of gas products

The mechanism of thermochemical sulfate reduction (TSR) was investigated by separately heating n-C₂₄ with three different sulfates (CaSO₄, Na₂SO₄, MgSO₄) in sealed gold tubes at 420 °C and measuring the stable carbon isotope values of hydrocarbon (C₁-C₅) and non-hydrocarbon (CO₂) products. Extensive TSR was observed with the MgSO₄ reactant as reflected by increasing concentrations of H₂S, ¹³C depleted CO₂ and relatively low concentrations of H₂ (compared to the control). H₂S yields were already very high at the first monitoring time (12 h) when the temperature had just reached 420 °C, suggesting that TSR had commenced well prior to this temperature. Only trace amounts of n-C₂₄ and secondary C₃-C₅ alkanes were detected at 12 h, reflecting the efficient TSR utilization of the reactant and lower molecular weight alkane products. Ethane levels were still relatively high at 12 h, but declined thereafter as it was subject to TSR in the absence of higher molecular weight alkanes which had already been utilized. Methane yields were consistently high throughout the 48 h MgSO₄ treatment. The temporal decrease in the concentrations of alkanes available for TSR may also contribute to the sharp enhancement of CO₂ after 36 h. Absence or dampening of the molecular and isotopic trends of MgSO₄ TSR was observed with Na₂SO₄ and CaSO₄ respectively, directly reflecting the levels of TSR reached using these sulfate treatments.For all treatments, the δ¹³C values of C_1-5n-alkanes showed an increase with both molecular weight and treatment time. MgSO₄ TSR led to a 5-10‰ increase in the δ¹³C values of the C₁-C₅ hydrocarbons and a 20‰ decrease in the δ¹³C value of CO₂. The significant ¹³C depletion of the CO₂ may be due to co-production of ¹³C enriched MgCO₃, although this remains unproven as the δ¹³C of MgCO₃ was not measured. The difference in the δ¹³C values of ethane and propane (Δδ¹³C_EP) increased in magnitude with the degree of TSR, and this trend could be used to help evaluate the occurrence and extent of TSR in subsurface gas reservoirs.     

Low stable carbon isotope fractionation by coccolithophore RubisCO

The ¹³C/¹²C ratio of carbon compounds is used to identify sources and sinks in the global carbon cycle. However, the relatively enriched ¹³C content observed for marine organic carbon remains enigmatic. The majority of oceanic carbon is fixed by algae and cyanobacteria via the Calvin-Benson-Bassham cycle, yet isotopic discrimination by the CO₂ fixation enzyme, RubisCO (ribulose 1,5-bisphosphate carboxylase/oxygenase), has only been measured for a single marine cyanobacterium. Different forms of RubisCO occur in different phytoplankton species (overall amino acid identity varying by as much as ∼75%) and thus may vary in the degree to which they fractionate carbon. Here we measured isotope discrimination by RubisCO from the coccolithophore Emiliania huxleyi, a cosmopolitan species used as a marine algal model.E. huxleyi RubisCO discriminated substantially less (ε = 11.1‰) against ¹³CO₂ than other RubisCO enzymes (18-29‰), despite having Michaelis-Menten kinetic parameters (K_CO2 = 72 μM; V_max = 0.66 μmol min⁻¹ mg⁻¹ protein) similar to those measured for RubisCO enzymes from different organisms. If widespread, decreased isotope discrimination of ¹³C by phytoplankton RubisCO may be a major factor influencing the enriched ¹³C content of marine organic carbon. This finding emphasizes the necessity of (a) determining ε values for RubisCOs of other marine phytoplankton and (b) re-evaluation of δ¹³C values from physiological, environmental, and geological studies.     

The stable carbon isotope biogeochemistry of acetate and other dissolved carbon species in deep subseafloor sediments at the northern Cascadia Margin

Ocean drilling has revealed the existence of vast microbial populations in the deep subseafloor, but to date little is known about their metabolic activities. To better understand the biogeochemical processes in the deep biosphere, we investigate the stable carbon isotope chemistry of acetate and other carbon-bearing metabolites in sediment pore-waters. Acetate is a key metabolite in the cycling of carbon in anoxic sediments. Its stable carbon isotopic composition provides information on the metabolic processes dominating acetate turnover in situ. This study reports our findings for a methane-rich site at the northern Cascadia Margin (NE Pacific) where Expedition 311 of the Integrated Ocean Drilling Program (IODP) sampled the upper 190 m of sediment. At Site U1329, δ¹³C values of acetate span a wide range from −46.0‰ to −11.0‰ vs. VPDB and change systematically with sediment depth. In contrast, δ¹³C values of both the bulk dissolved organic carbon (DOC) (−21.6 ± 1.3‰ vs. VPDB) and the low-molecular-weight compound lactate (−20.9 ± 1.8‰ vs. VPDB) show little variability. These species are interpreted to represent the carbon isotopic composition of fermentation products. Relative to DOC, acetate is up to 23.1‰ depleted and up to 9.1‰ enriched in ¹³C. Broadly, ¹³C-depletions of acetate relative to DOC indicate flux of carbon from acetogenesis into the acetate pool while ¹³C-enrichments of pore-water acetate relative to DOC suggest consumption of acetate by acetoclastic methanogenesis. Isotopic relationships between acetate and lactate or DOC provide new information on the carbon flow and the presence and activity of specific functional microbial communities in distinct biogeochemical horizons of the sediment. In particular, they suggest that acetogenic CO₂-reduction can coexist with methanogenic CO₂-reduction, a notion contrary to the hypothesis that hydrogen levels are controlled by the thermodynamically most favorable electron-accepting process. Further, the isotopic relationship suggests a relative increase in acetate flow to acetoclastic methanogenesis with depth although its contribution to total methanogenesis is probably small. Our study demonstrates how the stable carbon isotope biogeochemistry of acetate can be used to identify pathways of microbial carbon turnover in subsurface environments. Our observations also raise new questions regarding the factors controlling acetate turnover in marine sediments.     

Can pelagic net heterotrophy account for carbon fluxes from eastern Canadian lakes?

Lakes worldwide are commonly oversaturated with CO₂, however the source of this CO₂ oversaturation is not well understood. To examine the magnitude of the C flux to the atmosphere and determine if an excess of respiration (R) over gross primary production (GPP) is sufficient to account for this C flux, metabolic parameters and stable isotopes of dissolved O₂ and C were measured in 23 Québec lakes. All of the lakes sampled were oversaturated with CO₂ over the sampling period, on average 221 ± 25%. However, little evidence was found to conclude that this CO₂ oversaturation was the result of an excess of pelagic R over GPP. In lakes Croche and à l’Ours, where CO₂ flux, R and GPP were measured weekly, the annual difference between pelagic GPP and R, or net primary production (NPP), was not sufficient to account for the size of the CO₂ flux to the atmosphere. In Lac Croche average annual NPP was 14.4 mg C m⁻² d⁻¹ while the average annual flux of CO₂ to the atmosphere was 34 mg C m⁻² d⁻¹. In Lac à l’Ours average annual NPP was −9.1 mg C m⁻² d⁻¹ while the average annual flux of CO₂ to the atmosphere was 55 mg C m⁻² d⁻¹. In all of the lakes sampled, O₂ saturation averaged 104.0 ± 1.7% during the ice-free season and the isotopic composition of dissolved O₂ (δ¹⁸O_DO) was 22.9 ± 0.3‰, lower than atmospheric values and indicative of net autotrophy. Carbon evasion was not a function of R, nor did the isotopic signature of dissolved CO₂ in the lakes present evidence of excess R over GPP. External inputs of C must therefore subsidize the lake to explain the continued CO₂ oversaturation. The isotopic composition of dissolved inorganic C (δ¹³C_DIC) indicates that the CO₂ oversaturation cannot be attributed to in situ aerobic respiration. δ¹³C_DIC reveals a source of excess C enriched in ¹³C, which may be accounted for by anaerobic sediment respiration or groundwater inputs followed by kinetic isotope fractionation during degassing under open system conditions.     

The separate production of H2S from the thermal reaction of hydrocarbons with magnesium sulfate and sulfur: Implications for thermal sulfate reduction

The yields and stable C and H isotopic composition of gaseous products from the reactions of pure n-C₂₄ with (1) MgSO₄; and (2) elemental S in sealed Au-tubes at a series of temperatures over the range 220–600 °C were monitored to better resolve the reaction mechanisms. Hydrogen sulfide formation from thermochemical sulfate reduction (TSR) of n-C₂₄ with MgSO₄ was initiated at 431 °C, coincident with the evolution of C₂–C₅ hydrocarbons. Whereas the yields of H₂S increased progressively with pyrolysis temperature, the hydrocarbon yields decreased sharply above 490 °C due to subsequent S consumption. Ethane and propane were initially very ¹³C depleted, but became progressively heavier with pyrolysis temperature and were more ¹³C enriched than the values of a control treatment conducted on just n-C₂₄ above 475 °C. TSR of MgSO₄ also led to progressively higher concentrations of CO₂ showing relatively low δ¹³C values, possibly due to input of isotopically light CO₂ derived from gaseous hydrocarbon oxidation (e.g., more depleted CH₄).     

Geochemical characterization of secondary microbial gas occurrence in the Songliao Basin, NE China

A suite of natural gases from the northern Songliao Basin in NE China were characterized for their molecular and carbon isotopic composition. Gases from shallow reservoirs display clear geochemical evidence of alteration by biodegradation, with very high dryness (C₁/C₂₊ > 100), high C₂/C₃ and i-C₄/n-C₄ ratios, high nitrogen content and variable carbon dioxide content. Isotopic values show wide range variations (δ¹³C_CH4 from −79.5‰ to −45.0‰, δ¹³C_C2H6 from −53.7‰ to −32.2‰, δ¹³C_C3H8 from −36.5‰ to −20.1‰, δ¹³C_nC4H10 from −32.7‰ to −24.5‰, and δ¹³C_CO2 from −21.6‰ to +10.5‰). A variety of genetic types can be recognized on the basis of chemical and isotopic composition together with their geological occurrence. Secondary microbial gas generation was masked by primary microbial gas and the mixing of newly generated methane with thermogenic methane already in place in the reservoir can cause very complicated isotopic signatures. System openness also was considered for shallow biodegraded gas accumulations. Gases from the Daqing Anticline are relatively wet with ¹³C enriched methane and ¹³C depleted CO₂, representing typically thermogenic origin. Gases within the Longhupao-Da’an Terrace have variable dryness, ¹³C enriched methane and variable δ¹³C of CO₂, suggesting dominant thermogenic origin and minor secondary microbial methane augment. The Puqian-Ao’nan Uplift contains relatively dry gas with ¹³C depleted methane and ¹³C enriched CO₂, typical for secondary microbial gas with a minor part of thermogenic methane. Gas accumulations in the Western Slope are very dry with low carbon dioxide concentrations. Some gases contain ¹³C depleted methane, ethane and propane, indicating low maturity/primary microbial origin. Recognition of varying genetic gas types in the Songliao Basin helps explain the observed dominance of gas in the shallow reservoir and could serve as an analogue for other similar shallow gas systems.     

Abundance of mass 47 CO2 in urban air, car exhaust, and human breath

Atmospheric carbon dioxide is widely studied using records of CO₂ mixing ratio, δ¹³C and δ¹⁸O. However, the number and variability of sources and sinks prevents these alone from uniquely defining the budget. Carbon dioxide having a mass of 47 u (principally ¹³C¹⁸O¹⁶O) provides an additional constraint. In particular, the mass 47 anomaly (Δ₄₇) can distinguish between CO₂ produced by high temperature combustion processes vs. low temperature respiratory processes. Δ₄₇ is defined as the abundance of mass 47 isotopologues in excess of that expected for a random distribution of isotopes, where random distribution means that the abundance of an isotopologue is the product of abundances of the isotopes it is composed of and is calculated based on the measured ¹³C and ¹⁸O values. In this study, we estimate the δ¹³C (vs. VPDB), δ¹⁸O (vs. VSMOW), δ47, and Δ₄₇ values of CO₂ from car exhaust and from human breath, by constructing ‘Keeling plots’ using samples that are mixtures of ambient air and CO₂ from these sources. δ47 is defined as , where is the R⁴⁷ value for a hypothetical CO₂ whose δ¹³C_VPDB = 0, δ¹⁸O_VSMOW = 0, and Δ₄₇ = 0. Ambient air in Pasadena, CA, where this study was conducted, varied in [CO₂] from 383 to 404 μmol mol⁻¹, in δ¹³C and δ¹⁸O from −9.2 to −10.2‰ and from 40.6 to 41.9‰, respectively, in δ47 from 32.5 to 33.9‰, and in Δ₄₇ from 0.73 to 0.96‰. Air sampled at varying distances from a car exhaust pipe was enriched in a combustion source having a composition, as determined by a ‘Keeling plot’ intercept, of −24.4 ± 0.2‰ for δ¹³C (similar to the δ¹³C of local gasoline), δ¹⁸O of 29.9 ± 0.4‰, δ47 of 6.6 ± 0.6‰, and Δ₄₇ of 0.41 ± 0.03‰. Both δ¹⁸O and Δ₄₇ values of the car exhaust end-member are consistent with that expected for thermodynamic equilibrium at∼200 °C between CO₂ and water generated by combustion of gasoline-air mixtures. Samples of CO₂ from human breath were found to have δ¹³C and δ¹⁸O values broadly similar to those of car exhaust-air mixtures, −22.3 ± 0.2 and 34.3 ± 0.3‰, respectively, and δ47 of 13.4 ± 0.4‰. Δ₄₇ in human breath was 0.76  ± 0.03‰, similar to that of ambient Pasadena air and higher than that of the car exhaust signature.     

Hydrogen isotopic fractionation in lipid biosynthesis by H2-consuming Desulfobacterium autotrophicum

We report hydrogen isotopic fractionations between water and fatty acids of the sulfate-reducing bacterium Desulfobacterium autotrophicum. Pure cultures were grown in waters with deuterium (D) contents that were systematically varied near the level of natural abundance (−37‰ ? δD ? 993‰). H₂ of constant hydrogen isotope (D/H) ratio was supplied to the cultures. The D/H ratios of water, H₂, and specific fatty acids were measured by isotope-ratio mass spectrometry. The results demonstrate that D. autotrophicum catalyzes hydrogen isotopic exchange between water and H₂, and this reaction is conclusively shown to approach isotopic equilibrium. In addition, variation in the D/H ratio of growth water accounts for all variation in the hydrogen isotopic composition of fatty acids. The D/H ratios of fatty acids from cultures grown on H₂/CO₂ are compared with those from a separate set of cultures grown on D-enriched formate, an alternative electron donor. This comparison rules out H₂ as a significant source of fatty acid hydrogen. Grown on either H₂/CO₂ or formate, D. autotrophicum produces fatty acids in which all hydrogen originates from water. For specific fatty acids, biosynthetic fractionation factors are mostly in the range 0.60 ? α_FA-water ? 0.70; the 18:0 fatty acid exhibits a lower fractionation factor of 0.52. The data show that α_FA-water generally increases with length of the carbon chain from C₁₄ to C₁₇ among both saturated and unsaturated fatty acids. These results indicate a net fractionation associated with fatty acid biosynthesis in D. autotrophicum that is slightly smaller than in another H₂-consuming bacterium (Sporomusa sp.), but much greater than in most photoautotrophs.     

Microbial dissolution of calcite at T = 28 °C and ambient pCO2

This study used batch reactors to quantify the mechanisms and rates of calcite dissolution in the presence and absence of a single heterotrophic bacterial species (Burkholderia fungorum). Experiments were conducted at T = 28°C and ambient pCO₂ over time periods spanning either 21 or 35 days. Bacteria were supplied with minimal growth media containing either glucose or lactate as a C source, NH₄⁺ as an N source, and H₂PO₄⁻ as a P source. Combining stoichiometric equations for microbial growth with an equilibrium mass-balance model of the H₂O-CO₂-CaCO₃ system demonstrates that B. fungorum affected calcite dissolution by modifying pH and alkalinity during utilization of ionic N and C species. Uptake of NH₄⁺ decreased pH and alkalinity, whereas utilization of lactate, a negatively charged organic anion, increased pH and alkalinity. Calcite in biotic glucose-bearing reactors dissolved by simultaneous reaction with H₂CO₃ generated by dissolution of atmospheric CO₂ (H₂CO₃ + CaCO₃ → Ca²⁺ + 2HCO₃⁻) and H⁺ released during NH₄⁺ uptake (H⁺ + CaCO₃ → Ca²⁺ + HCO₃⁻). Reaction with H₂CO₃ and H⁺ supplied ∼45% and 55% of the total Ca²⁺ and ∼60% and 40% of the total HCO₃⁻, respectively. The net rate of microbial calcite dissolution in the presence of glucose and NH₄⁺ was ∼2-fold higher than that observed for abiotic control experiments where calcite dissolved only by reaction with H₂CO₃. In lactate bearing reactors, most H⁺ generated by NH₄⁺ uptake reacted with HCO₃⁻ produced by lactate oxidation to yield CO₂ and H₂O. Hence, calcite in biotic lactate-bearing reactors dissolved by reaction with H₂CO₃ at a net rate equivalent to that calculated for abiotic control experiments. This study suggests that conventional carbonate equilibria models can satisfactorily predict the bulk fluid chemistry resulting from microbe-calcite interactions, provided that the ionic forms and extent of utilization of N and C sources can be constrained. Because the solubility and dissolution rate of calcite inversely correlate with pH, heterotrophic microbial growth in the presence of nonionic organic matter and NH₄⁺ appears to have the greatest potential for enhancing calcite weathering relative to abiotic conditions.     

Insights into C and H storage in the altered oceanic crust: Results from ODP/IODP Hole 1256D

Carbon and hydrogen concentrations and isotopic compositions were measured in 19 samples from altered oceanic crust cored in ODP/IODP Hole 1256D through lavas, dikes down to the gabbroic rocks. Bulk water content varies from 0.32 to 2.14 wt% with δD values from −64‰ to −25‰. All samples are enriched in water relative to fresh basalts. The δD values are interpreted in terms of mixing between magmatic water and another source that can be either secondary hydrous minerals and/or H contained in organic compounds such as hydrocarbons. Total CO₂, extracted by step-heating technique, ranges between 564 and 2823 ppm with δ¹³C values from −14.9‰ to −26.6‰. As for water, these altered samples are enriched in carbon relative to fresh basalts. The carbon isotope compositions are interpreted in terms of a mixing between two components: (1) a carbonate with δ¹³C = −4.5‰ and (2) an organic compound with δ¹³C = −26.6‰. A mixing model calculation indicates that, for most samples (17 of 19), more than 75% of the total C occurs as organic compounds while carbonates represent less than 25%. This result is also supported by independent estimates of carbonate content from CO₂ yield after H₃PO₄ attack. A comparison between the carbon concentration in our samples, seawater DIC (Dissolved Inorganic Carbon) and DOC (Dissolved Organic Carbon), and hydrothermal fluids suggests that CO₂ degassed from magmatic reservoirs is the main source of organic C addition to the crust during the alteration process. A reduction step of dissolved CO₂ is thus required, and can be either biologically mediated or not. Abiotic processes are necessary for the deeper part of the crust (>1000 mbsf) because alteration temperatures are greater than any hyperthermophilic living organism (i.e. T > 110 °C). Even if not required, we cannot rule out the contribution of microbial activity in the low-temperature alteration zones. We propose a two-step model for carbon cycling during crustal alteration: (1) when “fresh” oceanic crust forms at or close to ridge axis, alteration starts with hot hydrothermal fluids enriched in magmatic CO₂, leading to the formation of organic compounds during Fischer-Tropsch-type reactions; (2) when the crust moves away from the ridge axis, these interactions with hot hydrothermal fluids decrease and are replaced by seawater interactions with carbonate precipitation in fractures. Taking into account this organic carbon, we estimate C isotope composition of mean altered oceanic crust at ∼ −4.7‰, similar to the δ¹³C of the C degassed from the mantle at ridge axis, and discuss the global carbon budget. The total flux of C stored in the altered oceanic crust, as carbonate and organic compound, is 2.9 ± 0.4 × 10¹² molC/yr.     

Indoor and outdoor urban atmospheric CO2: Stable carbon isotope constraints on mixing and mass balance

From July to November 2009, concentrations of CO₂ in 78 samples of ambient air collected in 18 different interior spaces on a university campus in Dallas, Texas (USA) ranged from 386 to 1980 ppm. Corresponding δ¹³C values varied from −8.9‰ to −19.4‰. The CO₂ from 22 samples of outdoor air (also collected on campus) had a more limited range of concentrations from 385 to 447 ppm (avg. = 408 ppm), while δ¹³C values varied from −10.1‰ to −8.4‰ (avg.=-9.0‰). In contrast to ambient indoor and outdoor air, the concentrations of CO₂ exhaled by 38 different individuals ranged from 38,300 to 76,200 ppm (avg. = 55,100 ppm), while δ¹³C values ranged from −24.8‰ to −17.7‰ (avg. = −21.8‰). The residence times of the total air in the interior spaces of this study appear to have been on the order of 10 min with relatively rapid approaches (∼30 min) to steady-state concentrations of ambient CO₂ gas. Collectively, the δ¹³C values of the indoor CO₂ samples were linearly correlated with the reciprocal of CO₂ concentration, exhibiting an intercept of −21.8‰, with r² = 0.99 and p < 0.001 (n = 78). This high degree of linearity for CO₂ data representing 18 interior spaces (with varying numbers of occupants), and the coincidence of the intercept (−21.8‰) with the average δ¹³C value for human-exhaled CO₂ demonstrates simple mixing between two inputs: (1) outdoor CO₂ introduced to the interior spaces by ventilation systems, and (2) CO₂ exhaled by human occupants of those spaces. If such simple binary mixing is a common feature of interior spaces, it suggests that the intercept of a mixing line defined by two data points (CO₂ input from the local ventilation system and CO₂ in the ambient air of the room) could be a reasonable estimate of the average δ¹³C value of the CO₂ exhaled by the human occupants. Thus, such indoor spaces appear to constitute effective “sample vessels” for collection of CO₂ that can be used to determine the average proportions of C₃ and C₄-derived C in the diets of the occupants. For the various groups occupying the rooms sampled in this study, C₄-derived C appears to have constituted ∼40% of the average diet.     

Determination of carbon fractionation factor between aqueous carbonate and CO2(g) in two-direction isotope equilibration

The experiments were conducted in the open CO₂ system to find out the equilibrium fractionation between the carbonate ion and CO₂(g). The existence of isotopic equilibrium was checked using the two-direction approach by passing the CO₂−N₂ gases with different δ¹³C compositions (− 1.5‰ and − 23‰) through the carbonate solution with δ¹³C = − 4.2‰. The Δ_{CO3T²⁻−CO2(g)} equilibrium fractionation is given as 6.03 ± 0.17‰ at 25 °C. Discussion is provided about the significance of carbonate complexing in determination of Δ_{CO3T²⁻−CO2(g)} and Δ_{HCO3T⁻−CO2(g)} fractionations. Finally, an isotope numerical model of flow and kinetics of hydration and dehydroxylation is built to predict the isotopic behaviour of the system with time.     

C-O bonds in carbonate minerals: A new kind of paleothermometer

The abundance of the doubly substituted CO₂ isotopologue, ¹³C¹⁸O¹⁶O, in CO₂ produced by phosphoric acid digestion of synthetic, inorganic calcite and natural, biogenic aragonite is proportional to the concentration of ¹³C-¹⁸O bonds in reactant carbonate, and the concentration of these bonds is a function of the temperature of carbonate growth. This proportionality can be described between 1 and 50 °C by the function: Δ₄₇ = 0.0592 · 10⁶ · T⁻² − 0.02, where Δ₄₇ is the enrichment, in per mil, of ¹³C¹⁸O¹⁶O in CO₂ relative to the amount expected for a stochastic (random) distribution of isotopes among all CO₂ isotopologues, and T is the temperature in Kelvin. This relationship can be used for a new kind of carbonate paleothermometry, where the temperature-dependent property of interest is the state of ordering of ¹³C and ¹⁸O in the carbonate lattice (i.e., bound together vs. separated into different CO₃²⁻ units), and not the bulk δ¹⁸O or δ¹³C values. Current analytical methods limit precision of this thermometer to ca. ± 2 °C, 1σ. A key feature of this thermometer is that it is thermodynamically based, like the traditional carbonate-water paleothermometer, and so is suitable for interpolation and even modest extrapolation, yet is rigorously independent of the δ¹⁸O of water and δ¹³C of DIC from which carbonate grew. Thus, this technique can be applied to parts of the geological record where the stable isotope compositions of waters are unknown. Moreover, simultaneous determinations of Δ₄₇ and δ¹⁸O for carbonates will constrain the δ¹⁸O of water from which they grew.     

Limitations on the climatic and ecological signals provided by the δC values of phytoliths from a C4 North American prairie grass

Silica phytoliths, which are deposits of opal-A that precipitate in the intra- and intercellular spaces of plant tissues during transpiration, commonly contain small amounts of occluded organic matter. In this paper, we investigate whether the δ¹³C values of phytoliths from a C₄ grass, Calamovilfa longifolia, vary in response to climatic variables that can affect the carbon-isotope composition of plant tissues. There is no significant correlation (r² < 0.3) between climate variables and the δ¹³C values of C. longifolia tissues (average δ¹³C_tissue = −13.1 ± 0.6 ‰; n = 70) across the North American prairies. However, plant tissue δ¹³C values are lower for grasses collected in populated areas where the δ¹³C value of atmospheric CO₂ is expected to be lower because of fossil fuel burning. Phytolith δ¹³C values are more variable (δ¹³C = −27.3 to −23.0‰; average = −25.1 ± 1.3‰; n = 34) and more sensitive to changes in aridity than whole tissue δ¹³C values. The strongest correlations are obtained between the δ¹³C values of stem or sheath phytoliths and humidity (r² = 0.3), latitude (r² = 0.4) and amount of precipitation (r² = 0.5). However, use of these relationships is limited by the wide spread in δ¹³C values of phytoliths from different plant tissues at the same location. We have been unable to infer any relationship between δ¹³C values of phytoliths and expected variations in the δ¹³C values of atmospheric CO₂. The C. longifolia phytoliths are depleted of ¹³C relative to tissue carbon by 10-14‰. This means that the phytoliths examined in this study have carbon isotopic compositions within the range reported previously for phytoliths from C₃ plants. This observation may further limit the usefulness of soil-phytolith assemblage δ¹³C values for identifying shifts in grassland C₃:C₄ ratios.     

Carbon isotope effects in the open-system Fischer-Tropsch synthesis

Carbon isotopic composition was measured for products of the Fischer-Tropsch synthesis: catalytic reaction between CO and H₂ to produce CO, CO₂, light hydrocarbons C1-C4 and “oil” fraction. Hydrogen isotopes were also measured in the oil fraction and the produced water. Experimental runs were conducted in the flow-through reactor at 260-310 °C and 30 bar using the synthesis gas composed of 5N₂ + 3H₂ + 2CO, on Fe-catalyst mixed with ZSM-5 synthetic zeolite. In the two of seven runs a Fe + Co-catalyst was used that gives a lower yield of unsaturated hydrocarbons in reaction products. The isotopic effects depended on the conversion of the carbon monoxide. Under steady-state conditions (CO conversion more than 90%) a strong kinetic fractionation was observed between CO and CO₂ (∼−10‰) and CO and hydrocarbons (∼+38‰). At low conversion a clear “inverse” isotopic trend of the depletion in ¹³C of longer hydrocarbon chains was observed. On average, Δ₁₂ = δ¹³C(CH₄) − δ¹³C(C₂H₆) correlates well with the CO conversion: the C₂H₆ is ∼6‰ isotopically lighter than CH₄ at low conversion and ∼2‰ heavier at steady-state regime. Under steady-state conditions there almost no difference was observed in the isotopic composition of methane and ethane and higher hydrocarbons. The chemical composition of light hydrocarbons in the products of flow-through, dynamic FTS is different from that found in the static FTS-type experiments with Fe-catalyst, but isotopic effects are similar. Our results suggest that the isotopic distribution of carbon found in so-called “abiogenic” hydrocarbons from some natural gases (δ¹³C1 > δ¹³C2 > δ¹³C3  >?) is somewhat similar to that at low conversion of CO, but do not resemble the distribution characteristic for the high conversion products, at least, on Fe-catalyst. Other processes (a simple mixing of two or more endmembers) or other P-T conditions of the carbon reduction could be responsible for the “inverse” isotopic trend found in meteorites and some natural gases.