Denitrification in anoxic sediments supported by biological nitrate transport

Biologically available nitrogen (fixed N) is removed from the oceans by metabolic conversion of inorganic N forms (nitrate and ammonium) to N₂ gas. Much of this removal occurs in marine sediments, where reaction rates are thought to be limited by diffusion. We measured the concentration and isotopic composition of major dissolved nitrogen species in anoxic sediments off the coast of California. At depths below the diffusive penetration of nitrate, we found evidence of a large nitrate pool transported into the sediments by motile microorganisms. A ∼20‰ enrichment in ¹⁵N and ¹⁸O of this biologically transported nitrate over bottom water values and elevated [N₂] and δ¹⁵N-N₂ at depth indicate that this nitrate is consumed by enzymatic redox reactions with the production of N₂ as the end product. Elevated N₂O concentrations in pore waters below the nitrate diffusion depth confirm that these reactions include the denitrification pathway. A data-constrained model shows that at least 31% of the total N₂ production in anoxic sediments is linked to nitrate bio-transport. Under suboxic/anoxic regimes, this nitrate bio-transport augments diffusive transport, thus increasing benthic fixed nitrogen losses and the reducing burial efficiency of sedimentary organic matter.     

Anaerobic ammonium oxidation by nitrite (anammox): Implications for N2 production in coastal marine sediments

The respiratory reduction of nitrate (denitrification) is acknowledged as the most important process that converts biologically available nitrogen to gaseous dinitrogen (N₂) in marine ecosystems. Recent findings, however, indicate that anaerobic ammonium oxidation by nitrite (anammox) may be an important pathway for N₂ formation and N removal in coastal marine sediments and in anoxic water columns of the oceans. In the present study, we explored this novel mechanism during N mineralization by ¹⁵N amendments (single and coupled additions of ¹⁵NH₄⁺, ¹⁴NO₃⁻ and ¹⁵NO₃⁻) to surface sediments with a wide range of characteristics and overall reactivity. Patterns of ^29/30N₂ production in the pore water during closed sediment incubations demonstrated anammox at all 7 of the investigated sites. Stoichiometric calculations revealed that 4% to 79% of total N₂ production was due to this novel route. The relative importance of anammox for N₂ release was inversely correlated with remineralized solute production, benthic O₂ consumption, and surface sediment Chl a. The observed correlations indicate competition between reductants for pore water nitrite during early diagenesis and that additional factors (e.g. availability of Mn-oxides), superimposed on overall patterns of diagenetic activity, are important for determining absolute and relative rates of anammox in coastal marine sediments.     

海洋环境中的厌氧铵氧化研究进展

海洋环境中的厌氧铵氧化过程作为实现固定态氮从海洋生态系统中移除的一个新途径,广泛地存在于各种海洋环境中,包括永久性缺氧水体、沉积物、海冰甚至海底热液,是海洋氮循环过程中一个非常重要的环节。开展海洋环境中厌氧铵氧化过程的研究可以更好地量化海洋氮循环过程中的收支,而这一收支在很大程度上影响着全球的气候变化。介绍了海洋环境中厌氧铵氧化过程研究历史,并分别讨论了在大洋缺氧水体和沉积物中厌氧铵氧化速率的分布情况,同时还总结了海洋环境因子如温度、氧气、硫化氢、NO3-/NO2-、NH4+以及有机物等对厌氧铵氧化的影响。最后探讨了该领域研究中所存在的问题并指出了亟待开展的工作:特定大洋缺氧水体中厌氧铵氧化与反硝化的争议以及近岸缺氧水体中厌氧铵氧化的研究;陆架及深海大洋沉积物中厌氧铵氧化的深入研究;对于全球海洋氮循环收支的重新评估。     

Tidal pumping drives nutrient and dissolved organic matter dynamics in a Gulf of Mexico subterranean estuary

We hypothesize that nutrient cycling in a Gulf of Mexico subterranean estuary (STE) is fueled by oxygen and labile organic matter supplied by tidal pumping of seawater into the coastal aquifer. We estimate nutrient production rates using the standard estuarine model and a non-steady-state box model, separate nutrient fluxes associated with fresh and saline submarine groundwater discharge (SGD), and estimate offshore fluxes from radium isotope distributions. The results indicate a large variability in nutrient concentrations over tidal and seasonal time scales. At high tide, nutrient concentrations in shallow beach groundwater were low as a result of dilution caused by seawater recirculation. During ebb tide, the concentrations increased until they reached a maximum just before the next high tide. The dominant form of nitrogen was dissolved organic nitrogen (DON) in freshwater, nitrate in brackish waters, and ammonium in saline waters. Dissolved organic carbon (DOC) production was two-fold higher in the summer than in the winter, while nitrate and DON production were one order of magnitude higher. Oxic remineralization and denitrification most likely explain these patterns. Even though fresh SGD accounted for only ∼5% of total volumetric additions, it was an important pathway of nutrients as a result of biogeochemical inputs in the mixing zone. Fresh SGD transported ∼25% of DOC and ∼50% of total dissolved nitrogen inputs into the coastal ocean, with the remainder associated with a one-dimensional vertical seawater exchange process. While SGD volumetric inputs are similar seasonally, changes in the biogeochemical conditions of this coastal plain STE led to higher summertime SGD nutrient fluxes (40% higher for DOC and 60% higher for nitrogen in the summer compared to the winter). We suggest that coastal primary production and nutrient dynamics in the STE are linked.     

Anammox in Tidal Marsh Sediments: The Role of Salinity,Nitrogen Loading,and Marsh Vegetation

Anammox bacteria are widespread in the marine environment, but studies of anammox in marshes and other wetlands are still scarce. In this study, the role of anammox in nitrogen removal from marsh sediments was surveyed in four vegetation types characteristic of New England marshes and in unvegetated tidal creeks. The sites spanned a salinity gradient from 0 to 20 psu. The impact of nitrogen loading on the role of anammox in marsh sediments was studied in a marsh fertilization experiment and in marshes with high nitrogen loading entering through ground water. In all locations, nitrogen removal through anammox was low compared to denitrification, with anammox accounting for less than 3% of the total N₂ production. The highest relative importance of anammox was found in the sediments of freshwater-dominated marshes, where anammox approached 3%, whereas anammox was of lesser importance in saline marsh sediments. Increased nitrogen loading, in the form of nitrate from natural or artificial sources, did not impact the relative importance of anammox, which remained low in all the nitrogen enriched locations (<1%).     

Denitrification and N2O production in near-shore marine sediments

Methods were developed for determining rates of denitrification in coastal marine sediments by measuring the production of N₂ from undisturbed cores incubated in gas-tight chambers. Denitrification rates at summer temperatures (23°C) in sediment cores from Narragansett Bay, Rhode Island, were about 50μmol N₂m^?2 hr^?1. This nitrogen flux is equal to approximately one-half of the NH⁺₄flux from the sediments at this temperature and is of the magnitude necessary to account for the anomalously low N/P and anomalously high O/N ratios often reported for benthic nutrient fluxes. The loss of fixed nitrogen as N₂ during the benthic remineralization of organic matter, coupled with the importance of benthic remineralization processes in shallow coastal waters may help to explain why the availability of fixed nitrogen is a major factor limiting primary production in these areas. Narragansett Bay sediments are also a source of N₂O, but the amount of nitrogen involved was only about 0.2 μmol m^?2 hr^?1 at 23°C.     

Dissolved nutrient fluxes through a sandy estuarine beachface (Cape Henlopen,Delaware, U.S.A.): Contributions from fresh groundwater discharge,seawater recycling,and diagenesis

The sandy beachface at Cape Henlopen, Delaware, receives dissolved nutrient inputs from fresh upland groundwater and estuarine seawater and exports nutrients through intertidal and submarine groundwater discharge. The discharge of brackish beachface waters indicates that there must be additional diagenetic nutrient sources and sinks within the porous beachface aquifer. At some times of the year, diagenetic processes within the beachface remove nitrate from waters draining the beachface consistent with the stoichiometry of either denitrification or dissimilatory nitrate reduction to ammonium. Up to 50–100% of the nitrate load from the upland groundwaters is apparently reduced to N₂O/N₂ gas or ammonium during these periods. At other times, ammonium and nitrate are added to beachface waters consistent with the stoichiometry of organic matter remineralization and nitrification. Dissolved reactive phosphorus and silica are similarly consumed and produced by beachface processes at different times of the year, presumably by adsorption or desorption. Infiltration of reactive estuarine particles may be an additional source of nutrients and carbon that supports the diagenetic activity in the beachface aquifer. These observations suggest that sandy beachfaces are biogeochemically reactive systems that can serve as sources, sinks, and temporary reservoirs of nutrients to support the primary and secondary production of the adjacent intertidal zone.     

The Influence of Coastal Nutrients on Phytoplankton Productivity in a Shallow Low Inflow Estuary,Drakes Estero,California (USA)

Seasonal wind-driven upwelling along the U.S. West Coast supplies large concentrations of nitrogen to surface waters that drives high primary production. However, the influence of coastal upwelled nutrients on phytoplankton productivity in adjacent small estuaries and bays is poorly understood. This study was conducted in Drakes Estero, California, a low inflow estuary located in the Point Reyes National Seashore and the site of an oyster mariculture facility that produces 40 % of the oysters harvested in California. Measurements of nutrients, chlorophyll a, phytoplankton functional groups, and phytoplankton carbon and nitrogen uptake were made between May 2010 and June 2011. A sea-to-land gradient in nutrient concentrations was observed with elevated nitrate at the coast and higher ammonium at the landward region. Larger phytoplankton cells (>5 μm diameter) were dominant within the outer and middle Estero where phytoplankton primary productivity was fueled by nitrate and f-ratios were >0.5; the greatest primary production rates were in the middle Estero. Primary production was lowest within the inner Estero, where smaller phytoplankton cells (<5 μm) were dominant, and nitrogen uptake was dominated by ammonium. Phytoplankton blooms occurred at the outer and middle Estero and were dominated by diatoms during the spring and dry-upwelling seasons but dinoflagellates during the fall. Small flagellated algae (>2 μm) were dominant at the inner Estero where no blooms occurred. These results indicate that coastal nitrate and phytoplankton are imported into Drakes Estero and lead to periods of high new production that can support the oyster mariculture; a likely scenario also for other small estuaries and bays.     

Distribution,production and consumption of nitrous oxide in the Baltic Sea

Nitrous oxide supersaturation was measured in the Bothnian Bay, Bothnian Sea and four depth zones of the Baltic proper along with O₂, NO^?₃, NO^?₂ and other parameters useful in interpreting the sources of the N₂O. In the Baltic Sea supersaturation of N₂O (123%) was found in the surface water of 0 to 0.5 m. The supersaturation resulted in a flux of N₂O to the atmosphere of 2.8 × 10^?2Tg N · yr^?1 which was 5% of the estimated total nitrogen loss for the Baltic. For the entire photic zone (0 to 20 m) the N₂O saturation was 135%. The source of the N₂O is not clear, as the nitrification and denitrification were ruled out as sources. The N₂O saturation was the lowest (118%) in the intermediate zone. Nitrification appears to be the likely N₂O sorce in this region. At the halocline zone, an increasing oversaturation of N₂O (200 to 300%) correlated with decreasing O₂ concentrations and increasing NO^?₃ concentrations, indications of nitrification. Of the NH⁺₄ that was oxidized to NO^?₃, 0.56% was produced as N₂O. In the deep water zone, the supersaturation of N₂O remained very high (150 to 200%). Sufficient O₂, high NO^?₃ and the presence of nitrifying activity suggested nitrification as most likely source, however in deeper waters of this zone where oxygen was less than 2% saturation the N₂O production could be due to denitrification. In anoxic waters the N₂O concentrations rapidly decreased to zero suggesting N₂O consumption by denitrification, further evidenced by a developing nitrate anomaly.     

Differential Effects of Bivalves on Sediment Nitrogen Cycling in a Shallow Coastal Bay

In coastal ecosystems, suspension-feeding bivalves can remove nitrogen though uptake and assimilation or enhanced denitrification. Bivalves may also retain nitrogen through increased mineralization and dissimilatory nitrate reduction to ammonium (DNRA). This study investigated the effects of oyster reefs and clam aquaculture on denitrification, DNRA, and nutrient fluxes (NO _x , NH₄ ⁺, O₂). Core incubations were conducted seasonally on sediments adjacent to restored oyster reefs (Crassostrea virginica), clam aquaculture beds (Mercenaria mercenaria) which contained live clams, and bare sediments from Smith Island Bay, Virginia, USA. Denitrification was significantly higher at oyster reef sediments and clam aquaculture site than bare sediment in the summer; however, DNRA was not enhanced. The clam aquaculture site had the highest ammonium production due to clam excretion. While oyster reef and bare sediments exhibited seasonal differences in rate processes, there was no effect of season on denitrification, or dissimilatory nitrate reduction to ammonium (DNRA) or ammonium flux at the clam aquaculture site. This suggests that farm management practices or bivalve metabolism and excretion may override seasonal differences. When water column nitrate concentration was elevated, denitrification increased in clam aquaculture site and oyster reef sediments but not in bare sediment; DNRA was only stimulated at the clam aquaculture site. This, along with a significant and positive relationship between denitrification and sediment organic matter, suggests that labile carbon limited nitrate reduction at the bare sediment site. Bivalve systems can serve as either net sinks or sources of nitrogen to coastal ecosystems, depending mainly on the type of bivalve, location, and management practices.     

A quantitative reconstruction of organic matter and nutrient diagenesis in Mediterranean Sea sediments over the Holocene

A multicomponent diagenetic model was developed and applied to reconstruct the conditions under which the most recent sapropel, S1, was deposited in the eastern Mediterranean Sea. Simulations demonstrate that bottom waters must have been anoxic and sulphidic during the formation of S1 and that organic matter deposition was approximately three times higher than at present. Nevertheless, most present day sediment and pore water profiles — with the exception of pyrite, iron oxyhydroxides, iron-bound phosphorus and phosphate — can be reproduced under a wide range of redox conditions during formation of S1 by varying the depositional flux of organic carbon. As a result, paleoredox indicators (e.g., C_org:S ratio, C_org:P_org ratio, trace metals) are needed when assessing the contribution of oxygen-depletion and enhanced primary production to the formation of organic-rich layers in the geological record. Furthermore, simulations show that the organic carbon concentration in sediments is a direct proxy for export production under anoxic bottom waters.The model is also used to examine the post-depositional alteration of the organic-rich layer focussing on nitrogen, phosphorus, and organic carbon dynamics. After sapropel formation, remineralisation is dominated by aerobic respiration at a rate that is inversely proportional to the time since bottom waters became oxic once again. A sensitivity analysis was undertaken to identify the most pertinent parameters in regulating the oxidation of sapropels, demonstrating that variations in sedimentation rate, depositional flux of organic carbon during sapropel formation, bottom water oxygen concentration, and porosity have the largest impact. Simulations reveal that sedimentary nutrient cycling was markedly different during the formation of S1, as well as after reoxygenation of bottom waters. Accumulation of organic nitrogen in sediments doubled during sapropel deposition, representing a significant nitrogen sink. Following reventilation of deep waters, N₂ production by denitrification was almost 12 times greater than present day values. Phosphorus cycling also exhibits a strong redox sensitivity. The benthic efflux of phosphate was up to 3.5 times higher during the formation of S1 than at present due to elevated depositional fluxes of organic matter coupled with enhanced remineralisation of organic phosphorus. Reoxygenation of bottom waters leads to a large phosphate pulse to the water column that declines rapidly with time due to rapid oxidation of organic material. The oxidation of pyrite at the redox front forms iron oxyhydroxides that bind phosphorus and, thus, attenuate the benthic phosphate efflux. These results underscore the contrasting effects of oxygen-depletion on sedimentary nitrogen and phosphorus cycling. The simulations also confirm that the current conceptual paradigm of sapropel formation and oxidation is valid and quantitatively coherent.     

Nitrogen losses through sediment denitrification in Boston Harbor and Massachusetts Bay

Sediment denitrification is a microbial process that converts dissolved inorganic nitrogen in sediment porewaters to N₂ gas, which is subsequently lost to the atmosphere. In coastal waters, it represents a potentially important loss pathway for fixed nitrogen which might otherwise be available to primary producers. Currently, data are lacking to adequately assess the role of denitrification in reducing or remediating the effects of large anthropogenic nitrogen loads to the coastal zone. This study describes the results of 88 individual measurements of denitrification (as a direct flux of N₂ gas) in sediment cores taken over a 3-yr period (1991–1994) from six stations in Boston Harbor, nine stations in Massachusetts Bay, and two stations in Cape Cod Bay. The dataset is unique in its extensive spatial and temporal coverage and includes the first direct measurements of denitrification for North Atlantic shelf sediments. Results showed that rates of denitrification were significantly higher in Boston Harbor (mean=54, range<5–206 μmol N₂ m^?2 h^?1) than in Massachusetts Bay (mean=23, range<5–64 μmol N₂ m^?2 h^?1). Highest rates occurred in areas with organic-rich sediments in the harbor, with slower rates observed for low-organic sandy sediments in the harbor and at shallow shelf stations in the bay. Lowest rates were found at the deepest shelf stations, located in Stellwagen Basin in Massachusetts Bay. Observed rates were correlated with temperature, sediment carbon content, and benthic macrofaunal activity. Seasonally, highest denitrification rates occurred in the summer in Boston Harbor and in the spring and fall in Massachusetts Bay, coincident with peak phytoplankton blooms in the overlying water column. Despite the fact that sediment denitrification rates were high relative to rates reported for other East Coast estuaries, denitrification losses accounted for only 8% of the annual total nitrogen load to Boston Harbor, a consequence perhaps, of the short water-residence times (2–10 d) of the harbor.     

Nitrogen-15 Isotope Enrichment in Benthic Boundary Layer Gases of a Stratified Eutrophic Iron and Manganese Rich Lake

The applicability of the natural abundance of nitrogen gas isotope ratios was used to indicate the spatial distribution of nitrogen transformations in the water column and sediment pore waters of Lake Ngapouri, a small (area 0.19 km²), monomictic, eutrophic lake in the Taupo Volcanic Zone, North Island, New Zealand. Samples were collected from the epilimnion, hypolimnion, benthic boundary layer and at 5-cm intervals from the sediment pore waters at monthly intervals for 1 year. Values of δ¹⁵N [N₂] ranged from −1 to 0.28‰ in the epilimnion, −1.5 to 1.25‰ in the hypolimnion, −1.8 to 12.2‰ in the benthic boundary layer and −0.7 to 3.5‰ in sediment pore waters. Values of δ¹⁵N [N₂] showed a strong seasonal pattern that was related to the loss of dissolved oxygen in the hypolimnion during seasonal stratification. Increases in ¹⁵N-enriched dinitrogen take place in the benthic boundary layer during the periods of anoxia (taken to be dissolved oxygen concentrations <6.3 μM) and may be related to abundant ammonium substrate (up to 275 μM) to support denitrification. Nitrate concentrations increased up to 36 μM with increasing duration of anoxia. We hypothesise that an alternative electron acceptor besides oxygen is required to support the nitrification needed for the production of nitrate. Iron and manganese hydroxides and oxides from material sedimenting out of the water column may have induced chemo-nitrification sufficient to oxidise ammonium in the anoxic benthic boundary layer. The nitrate formed would mostly be rapidly denitrified so that the δ¹⁵N [N₂] would continue to become enriched during the presence of anoxia, as observed in hypolimnion and benthic boundary layer of Lake Ngapouri. The changes in δ¹⁵N [N₂] values indicate the potential use of isotope ratios to identify and quantify potential chemo-nitrification/denitrification in the water column and sediment pore waters of lakes.     

Lipids of marine Archaea: Patterns and provenance in the water-column and sediments

We measured archaeal lipid distributions from globally distributed samples of freshwater, marine, and hypersaline suspended particulate matter. Cluster analysis of relative lipid distributions identified four distinct groups, including: (1) marine epipelagic (<100 m) waters, (2) marine mesopelagic (200-1500 m) and upwelling waters, (3) freshwater/estuarine waters, and (4) hypersaline waters. A pronounced difference in lipid composition patterns is the near absence of ring-containing glycerol dialkyl glycerol tetraethers (GDGTs) at high salinity. Different archaeal communities populate marine (mesophilic Crenarchaeota and Euryarchaeota), and hypersaline environments (halophilic Euryarchaeota) and community shifts can regulate differences in lipid patterns between marine and hypersaline waters. We propose that community changes within meosphilic marine Archaea also regulate the lipid patterns distinguishing epipelagic and mesopelagic/upwelling zones. Changes in the relative amounts of crenarchaeol and caldarchaeol and low relative abundances of ringed structures in surface waters differentiate lipids from the epipelagic and mesopelagic/upwelling waters. Patterns of lipids in mesopelagic (and upwelling) waters are similar to those expected of the ammonia-oxidizing Group I Crenarchaeota, with predominance of crenarchaeol and abundant cyclic GDGTs; non-metric multidimensional analysis (NMDS) shows this pattern is associated with high nitrate concentrations. In contrast, limited culture evidence indicates marine Group II Euryarchaeota may be capable of producing mainly caldarchaeol and some, but not all, of the ringed GDGTs and we suggest that these organisms, along with the Crenarchaeota, contribute to lipids in epipelagic marine waters. Calculated TEX₈₆ temperatures in mesopelagic samples (reported here and in published data sets) are always much warmer than measured in situ temperatures. We propose lipids used in the temperature proxy derive from both Euryarchaeaota and Crenarchaeota, and observed values of TEX₈₆ are subject to changes in their ecology as influenced by nutrient fluctuations or other perturbations. Applications of published core-top TEX₈₆-SST correlations require that (1) the surface waters are always composed of similar communities with the same temperature response and (2) that deeper water GDGT production is not transported to the sediments. Our lipid distribution patterns demonstrate both surface-water archaeal community differences (which accompany greater nutrient influxes, shoaling of mesopelagic Crenarchaeota during upwelling periods, and possibly due to an influx of terrestrial Archaea), and changes in organic matter transport through the water column can affect the distribution of lipids recorded in sediments. We therefore suggest that reported temperature shifts in ancient applications indicate TEX₈₆ lipids recorded not only temperature changes, but also changes in archaeal ecology, nutrient concentrations, and possibly oceanographic conditions.     

Coupling Between the Coastal Ocean and Yaquina Bay,Oregon: Importance of Oceanic Inputs Relative to Other Nitrogen Sources

Understanding of the role of oceanic input in nutrient loadings is important for understanding nutrient and phytoplankton dynamics in estuaries adjacent to coastal upwelling regions as well as determining the natural background conditions. We examined the nitrogen sources to Yaquina Estuary (Oregon, USA) as well as the relationships between physical forcing and gross oceanic input of nutrients and phytoplankton. The ocean is the dominant source of dissolved inorganic nitrogen (DIN) and phosphate to the lower portion of Yaquina Bay during the dry season (May through October). During this time interval, high levels of dissolved inorganic nitrogen (primarily in the form of nitrate) and phosphate entering the estuary lag upwelling favorable winds by 2 days. The nitrate and phosphate levels entering the bay associated with coastal upwelling are correlated with the wind stress integrated over times scales of 4–6 days. In addition, there is a significant import of chlorophyll a to the bay from the coastal ocean region, particularly during July and August. Variations in flood-tide chlorophyll a lag upwelling favorable winds by 6 days, suggesting that it takes this amount of time for phytoplankton to utilize the recently upwelled nitrogen and be transported across the shelf into the estuary. Variations in water properties determined by ocean conditions propagate approximately 11–13 km into the estuary. Comparison of nitrogen sources to Yaquina Bay shows that the ocean is the dominant source during the dry season (May to October) and the river is the dominant source during the wet season with watershed nitrogen inputs primarily associated with nitrogen fixation on forest lands.     

Inorganic nitrogen dynamics in intertidal rocky biofilms and sediments of the Douro River estuary (Portugal)

In this study rates of oxygen, ammonium (NH₄ ⁺), nitrate (NO₃ ⁻), nitrite (NO₂ ⁻), and nitrous oxide (N₂O) fluxes, nitrogen (N) fixation, nitrification, and denitrification were compared between two intertidal sites for which there is an abundant global literature, muddy and sandy sediments, and two sites representing the rocky intertidal zone where biogeochemical processes have scarcely been investigated. In almost all sites oxygen production rates greatly exceeded oxygen consumption rates. During daylight, NH₄ ⁺ and NO₃ ⁻ uptake rates together with ammonification could supply the different N requirements of the primary producer communities at all four sites; N assimilation by benthic or epilithic primary producers was the major process of dissolved inorganic nitrogen (DIN) removal; N fixation, nitrification, and denitrification were minor processes in the overall light DIN cycle. At night, distinct DIN cycling processes took place in the four environments, denitrification rates ranged from 9 ± 2 to 360 ± 30 μmol N₂ m⁻² h⁻¹, accounting for 10–48% of the water column NO₃ ⁻ uptake; nitrification rates varied from 0 to 1712 ± 666 μmol NH₄ ⁺ m⁻² h⁻¹. A conceptual model of N cycle dynamics showed major differences between intertidal sediment and rocky sites in terms of the mean rates of DIN net fluxes and the processes involved, with rocky biofilm showing generally higher fluxes. Of particular significance, the intertidal rocky biofilms released 10 times the amount of N₂O produced in intertidal sediments (up to 17 ± 6 μmol N₂O m⁻² h⁻¹), representing the highest N₂O release rates ever recorded for marine systems. The biogeochemical contributions of intertidal rocky substrata to estuarine and coastal processes warrant future detailed investigation.     

Microbiological denitrification and denitrifying activity ofParacoccus Denitrificans

With rapidly industrial and agricultural development,more and more fertilizers,chemicals and heavy ions will be discharged into lakes and rivers,which would cause lake eutrophication and quality deterioration in drinking water sources.Therefore,denitrification is essential for controlling the amounts of nitrogen,During the transformation process from nitrate to the end products-nitrogen and several intermediated[e.g.nitrite(NO2^-),nitrous oxide(N2O) and nitric oxide(NO)]may be accumulated,which have more toxic influences on the environment.in This study,the denitrification effect of Paracoccus Denitrificans was examined on the changes between oxic and anoxic conditions at varying pH.At pH=7.5,denitrification proceeded well after 3 switches from oxic to anoxic conditions and vice versa,Production of N2 was constant and the amounts of NO2-,N2O and NO were extremely low.How ever,at pH=6.8,denitrification activity was inhitied and there large amounts of the intermaediates.The denitrifying bacteria decreased violently in dry weight and were washed out.     

Ecological effects from the balance between new and recycled nitrogen in Texas coastal waters

Benthic nutrient recycling is a significant source of dissolved nitrogen for south Texas coastal waters in the region of the Corpus Christi Bay estuary. Studies indicate that 90% of the dissolved nitrogen supply for phytoplankton production is derived from sediments in the upper-estuary, whereas benthic regeneration supplies only 33% of the dissolved nitrogen required for primary production outside the barrier island in coastal waters (15 m depth). In the upper-estuary relationships were observed between fluvial flow, water-column dissolved nitrogen, and phytoplankton productivity. In the middle-estuary relationships were observed between sediment recycling rates and water-column dissolved nitrogen. Beyond the barrier island, relationships were observed between fluvial flow and water-column dissolved nitrogen during high flow periods, while benthic regeneration appeared to be the major nutrient source during low flow periods. We suggest that combined effects from new and recycled nutrient sources buffer south Texas coastal productivity against long periods of low nutrient input from fluvial flow. The comparison of biological responses at several trophic levels to temporal variability in nitrogen recycling and fluvial flow indicated the importance of freshwater nitrogen inputs in stimulating primary production. Freshwater nitrogen inputs also appeared to sustain long-term productivity by replacing nutrients lost from the system by extended reliance upon recycling.     

Role of microorganisms in oceanic anoxic events (OAEs)

The accumulation of organic matter (OM) during oceanic anoxic events (OAEs) that took place in the Mesozoic may reflect different biogeochemical pathways and feedbacks related to palaeoenvironmental changes. It originates from a combination of nutrient cycling, metal concentrations and position of the chemocline and/or pycnocline controlling biological production. Because ocean stagnation cannot induce euxinia, an expanded oxygen minimum zone (OMZ) associated with upwelling and improved hydrological cycles is more commonly accepted. In some depositional settings, it permitted the evolution of anoxia/dysoxia to euxinia (sulphidic waters). The latter is recorded by the presence of anoxygenic phototrophs and involved denitrification, anaerobic oxidation of methane and sulphate reduction. In order to better constrain different OAE palaeoenvironments, models are suggested here that show the evolution from main microbial communities thriving through the water column to bacterial and more complex microbial mats. Therefore, microbial processes have a key role in OM production and metabolization. They directly influence the position of the chemocline. Detailed study of the OM preserved in black shales will be key to understanding OAEs.     

Relations of hydrogeologic factors, groundwater reduction-oxidation conditions, and temporal and spatial distributions of nitrate, Central-Eastside San Joaquin Valley, California, USA

In a 2,700-km² area in the eastern San Joaquin Valley, California (USA), data from multiple sources were used to determine interrelations among hydrogeologic factors, reduction-oxidation (redox) conditions, and temporal and spatial distributions of nitrate (NO₃), a widely detected groundwater contaminant. Groundwater is predominantly modern, or mixtures of modern water, with detectable NO₃ and oxic redox conditions, but some zones have anoxic or mixed redox conditions. Anoxic conditions were associated with long residence times that occurred near the valley trough and in areas of historical groundwater discharge with shallow depth to water. Anoxic conditions also were associated with interactions of shallow, modern groundwater with soils. NO₃ concentrations were significantly lower in anoxic than oxic or mixed redox groundwater, primarily because residence times of anoxic waters exceed the duration of increased pumping and fertilizer use associated with modern agriculture. Effects of redox reactions on NO₃ concentrations were relatively minor. Dissolved N₂ gas data indicated that denitrification has eliminated >5 mg/L NO₃–N in about 10% of 39 wells. Increasing NO₃ concentrations over time were slightly less prevalent in anoxic than oxic or mixed redox groundwater. Spatial and temporal trends of NO₃ are primarily controlled by water and NO₃ fluxes of modern land use.