Effects of benzo[a]pyrene on DNA damage and histological alterations in gonad of scallop Chlamys farreri

To investigate the biological impact of polycyclic aromatic hydrocarbons (PAHs) on reproductive system, scallops Chlamys farreri were continuously exposed to benzo[a]pyrene (BaP) (0.5, 3, 10 μg L^?1) during 15 days. DNA damage and histological alterations were examined in female gonad. DNA strand break levels significantly increased after 12 h exposure, and remained high and significantly different from control values until the end of the exposure. In the ovaries of the scallops exposed to 10 μg L^?1 BaP for ten days, histological analysis showed that the cytoplasts of the oocytes in the outer layer of the ovaries became sparse, and the nuclear membranes were obscure. Damaging effects on ovaries and oocytes were more severe after 15 days exposure. Degenerating oocytes increased and the connective tissue of the ovary envelops became loose. Electron microscopic examination revealed ultrastructural aspects of degenerating oocyte and degenerated oocyte after 15 days exposure.     

Reproductive patterns of the abyssal asteroid Styracaster elongatus from the N.E. Atlantic Ocean

We analysed the reproductive biology of the asteroid species Styracaster elongatus based on time-series samples from a 5000-m-deep site on the Porcupine Abyssal Plain (N.E. Atlantic). The ratio of males to females, the gonadosomatic index (GI), and pyloric caecum index (PCI) were determined and the results were corroborated by histological examination of the gonads. Fecundity and oocyte-size distribution were determined by histological and image analyses. Styracaster elongatus is a gonochoric asteroid and the ratio of males to females was not significantly different throughout the year. Oogenesis was asynchronous. The previtellogenic oocytes grew to a size of ～230 μm before undergoing vitellogenesis. Maximum oocyte size was ～620 μm. The ovary volume was mainly occupied by small previtellogenic oocytes (100–150 μm) at any one time. Mean GI was 6.38±3.30 for females and 9.04±4.1 for males. Mean PCI was 7.44±1.66 for females and 7.66±1.46 for males. Mean fecundity was 16,373±5988 oocites per female. There were no seasonal variations in GI and fecundity. There was evidence of a pyiloric caecum seasonal development for females and males. For S. elongatus there is no direct relationship among seasonal primary production at the surface and production of vitellogenic oocytes. Nevertheless, this species takes advantage of the pulse of phytodetritus to the seabed by increasing the storage of nutrients in the pyloric caecum in order to maintain a constant production of eggs and sperm.     

The swarm dynamics of northern krill (Meganyctiphanes norvegica) and pteropods (Cavolinia inflexa) during vertical migration in the Ligurian Sea observed by an acoustic Doppler current profiler

A ship-mounted 153 kHz narrow-band ADCP and 1 m² MOCNESS were deployed between 16 and 24 Sept. 1997 in the Ligurian central zone (∼43°20′N 7°48′E). Results from both instruments showed that the zooplankton community performed vertical migrations that conformed to the classical pattern of ascent at dusk (∼18:30 h) and descent at dawn (∼06:30 h). Depth-discrete net samples between 0 and 500 m showed that the community was dominated by two species, the euphausiid Meganyctiphanes norvegica (Northern krill) and the pteropod Cavolinia inflexa, which migrated in separate discrete bands that were detectable by the ADCP. Information from the ADCP was used to estimate vertical migration speed in two ways: (i) from the trajectory of the back-scattering bands over time and (ii) from the Doppler-shift vertical velocity measured within depth zones at the corresponding time and depth of these bands. Estimates of the migration speed of C. inflexa were between 2 and 7 cm s⁻¹ upwards and between 4 and 7 cm s⁻¹ downwards. M. norvegica was estimated to migrate at speeds between 7 and 8 cm s⁻¹ upwards and over 11 cm s⁻¹ downwards. The consistently lower migration speeds estimated from Doppler measurements as compared with estimates obtained from measuring trajectories of back-scattering bands over time was believed to result from a methodological artefact. The Doppler measurements were nevertheless useful in a relative sense in revealing the relative speed of individuals within swarms. It was shown that individuals at the front of the upwardly migrating band of M. norvegica moved more slowly than those at the rear. These results illustrate the extra biological information that can be obtained by ADCPs compared with conventional echo-sounders.     

Tracing seafloor methane emissions with benthic foraminifera: Results from the Ana submarine landslide (Eivissa Channel,Western Mediterranean Sea)

The hypothesis that benthic foraminifera are useful proxies of local methane emissions from the seafloor has been verified on sediment core KS16 from the headwall of the Ana submarine landslide in the Eivissa Channel, Western Mediterranean Sea. The core MS312 from a nearby location with no known methane emissions is utilised as control. The core was analysed for biostratigraphy, benthic foraminiferal assemblages, Hyalinea balthica and Uvigerina peregrina carbon and oxygen stable isotope composition, and sedimentary structures. The upper part of the core records post-landslide deglacial and Holocene normal marine hemipelagic sediments with highly abundant benthic foraminifera species that are typical of outer neritic to upper bathyal environment. In this interval, the δ¹³C composition of benthic foraminifera indicates normal marine environment analogous to those found in the control core. Below the sedimentary hiatus caused by the emplacement of the slide, the foraminiferal assemblages are characterised by lower density and higher Shannon Index. Markedly negative δ¹³C shifts in benthic foraminifera are attributed to the release of methane through the seabed. The mean values of the ¹³C anomaly in U. peregrina are ? 0.951 ± 0.208 in the pre-landslide sediments, and ? 0.269 ± 0.152 in post-slide reworked sediments deposited immediately above the hiatus. The δ¹³C anomaly in Hyalinea balthica is ? 2.497 ± 0.080 and ? 2.153 ± 0.087, respectively. To discard the diagenetic effects on the δ¹³C anomaly, which could have been induced by Ca–Mg replacement and authigenic carbonate overgrowth on foraminifera tests, a benthic foraminifera subsample has been treated following an oxidative and reductive cleaning protocol. The cleaning has resulted, only in some cases, in a slight reduction of the anomaly by 0.95% for δ¹³C and < 0.80% for δ¹⁸O. Therefore, the first conclusion is that the diagenetic alteration is minor and it does not alter significantly the overall carbon isotopic anomaly in the core. Consequently, the pre-landslide sediments have been subject to pervasive methane emissions during a time interval of several thousand years. Methane emissions continued during and immediately after the occurrence of Ana Slide at about 61.5 ka. Subsequently, methane emissions decreased and definitely ceased during the last deglaciation and the Holocene.     

Egg production of turbot,Scophthalmus maximus,in the Baltic Sea

In the brackish water Baltic Sea turbot spawn at ~ 6–9 psu along the coast and on offshore banks in ICES SD 24–29, with salinity influencing the reproductive success. The potential fecundity (the stock of vitellogenic oocytes in the pre-spawning ovary), egg size (diameter and dry weight of artificially fertilized 1-day-old eggs) and gonad dry weight were assessed for fish sampled in SD 25 and SD 28. Multiple regression analysis identified somatic weight, or total length in combination with Fulton's condition factor, as main predictors of fecundity and gonad dry weight with stage of maturity (oocyte packing density or leading cohort) as an additional predictor. For egg size, somatic weight was identified as main predictor while otolith weight (proxy for age) was an additional predictor. Univariate analysis using GLM revealed significantly higher fecundity and gonad dry weight for turbot from SD 28 (3378–3474 oocytes/g somatic weight) compared to those from SD 25 (2343 oocytes/g somatic weight), with no difference in egg size (1.05 ± 0.03 mm diameter and 46.8 ± 6.5 μg dry weight; mean ± sd). The difference in egg production matched egg survival probabilities in relation to salinity conditions suggesting selection for higher fecundity as a consequence of poorer reproductive success at lower salinities. This supports the hypothesis of higher size-specific fecundity towards the limit of the distribution of a species as an adaptation to harsher environmental conditions and lower offspring survival probabilities. Within SD 28 comparisons were made between two major fishing areas targeting spawning aggregations and a marine protected area without fishing. The outcome was inconclusive and is discussed with respect to potential fishery induced effects, effects of the salinity gradient, effects of specific year-classes, and effects of maturation status of sampled fish.     

Identifying spawning events in the Japanese flounder Paralichthys olivaceus from depth time-series data

Vertical swimming events (VSEs) of the Japanese flounder, Paralichthys olivaceus, recorded by high-frequency depth data loggers, were analysed to identify spawning events. In total 25,907 VSEs from 10 adult fish were classified into 4 clusters using a k-means method. VSEs in a specific cluster (cluster-S) characterised by accelerated vertical swimming were identified as possible spawning events. Both the descent (0.43 ± 0.22 body length s^− 1) and ascent rates (0.43 ± 0.24 body length s^− 1) of VSEs in cluster-S were more than 4 times faster than in any other VSE. Our analyses indicated that 4 individuals exhibited the spawning events during the recording periods. The estimated spawning frequency ranged from 0.74 to 0.90 events day^− 1. These values were comparable to those obtained in other field and laboratory studies. The spawning condition of fish at the time of recapture was confirmed by separate histological and anatomical observations, which supported the cluster analysis results. These results suggest that a clustering technique can be successfully applied to identify spawning behaviour from time-depth data of free-swimming flatfishes that exhibit vertical swimming movements.     

Bioaccumulation and trophic transfer of mercury in striped bass (Morone saxatilis) and tautog (Tautoga onitis) from the Narragansett Bay (Rhode Island,USA)

We examined the bioaccumulation and trophic transfer of mercury in two marine finfish species, striped bass (Morone saxatilis) and tautog (Tautoga onitis), collected from the Narragansett Bay (Rhode Island, USA). For each of these target fish, white muscle tissue was analyzed for total mercury (Hg) and results were evaluated relative to fish age, body size, and Hg content of preferred prey. Dietary and stable isotope analysis was also used to elucidate the effect of trophic processes on Hg concentrations in fish. The Hg content of muscle tissue was positively correlated with fish age and length for both species, although striped bass accumulated Hg faster than tautog. Accelerated Hg bioaccumulation in striped bass is consistent with its high trophic level (trophic level = 4.07) and Hg-enriched prey (forage fish and macrocrustaceans; mean Hg content = 0.03 mg Hg kg wet wt^?1). In contrast, tautog maintain a lower trophic status (trophic level = 3.51) and consume prey with lower Hg levels (mussels and crabs; mean Hg content = 0.02 mg Hg kg wet wt^?1). Despite differences in Hg bioaccumulation between target fish, the mean Hg concentration of tautog exceeded levels in striped bass (0.24 and 0.16 mg Hg kg wet wt^?1, respectively) due to a disparity in age-at-catch between sampled groups (mean age of tautog and bass = 11.3 and 4.3 yr, respectively). Taking into account legal minimum catch lengths further revealed that 75.0% of legal-size striped bass (>70.2 cm TL; n = 4) and 44.8% of tautog (>40.6 cm TL; n = 29) had Hg levels beyond the US EPA regulatory threshold of 0.3 mg Hg kg wet wt^?1. Moreover, Hg-length relationships suggest that each target fish meets this threshold near their minimum legal catch length. Our findings reiterate the value of species ecology to improve predictions of fish Hg and permit better management of human contamination by this important dietary source.     

The natural diet of a hexactinellid sponge: Benthic–pelagic coupling in a deep-sea microbial food web

Dense communities of shallow-water suspension feeders are known to sidestep the microbial loop by grazing on ultraplankton at its base. We quantified the diet, rates of water processing, and abundance of the deep-sea hexactinellid sponge Sericolophus hawaiicus, and found that, like their demosponge relatives in shallow water, hexactinellids are a significant sink for ultraplankton. S. hawaiicus forms a dense bed of sponges on the Big Island of Hawaii between 360 and 460 m depth, with a mean density of 4.7 sponges m⁻². Grazing of S. hawaiicus on ultraplankton was quantified from in situ samples using flow cytometry, and was found to be unselective. Rates of water processing were determined with dye visualization and ranged from 1.62 to 3.57 cm s⁻¹, resulting in a processing rate of 7.9±2.4 ml sponge⁻¹ s⁻¹. The large amount of water processed by these benthic suspension feeders results in the transfer of approximately 55 mg carbon and 7.3 mg N d⁻¹ m⁻² from the water column to the benthos. The magnitude of this flux places S. hawaiicus squarely within the functional group of organisms that link the pelagic microbial food web to the benthos.     

Autonomous Microbial Sampler (AMS), a device for the uncontaminated collection of multiple microbial samples from submarine hydrothermal vents and other aquatic environments

An Autonomous Microbial Sampler (AMS) is described that will obtain uncontaminated and exogenous DNA-free microbial samples from most marine, freshwater and hydrothermal ecosystems. Sampling with the AMS may be conducted using manned submersibles, remotely operated vehicles (ROVs), autonomous underwater vehicles (AUVs), or when tethered to a hydrowire during hydrocast operations on research vessels. The modular device consists of a titanium nozzle for sampling in potentially hot environments (>350 °C) and fluid-handling components for the collection of six independent filtered or unfiltered samples. An onboard microcomputer permits sampling to be controlled by the investigator, by external devices (e.g., AUV computer), or by internal programming. Temperature, volume pumped and other parameters are recorded during sampling. Complete protection of samples from microbial contamination was observed in tests simulating deployment of the AMS in coastal seawater, where the sampling nozzle was exposed to seawater containing 1×10⁶ cells ml⁻¹ of a red pigmented tracer organism, Serratia marinorubra. Field testing of the AMS at a hydrothermal vent field was successfully undertaken in 2000. Results of DNA destruction studies have revealed that exposure of samples of the Eukaryote Euglena and the bacterium S. marinorubra to 0.5 N sulfuric acid at 23 °C for 1 h was sufficient to remove polymerase chain reaction (PCR) amplifiable DNA. Studies assessing the suitability of hydrogen peroxide as a sterilizing and DNA-destroying agent showed that 20% or 30% hydrogen peroxide sterilized samples of Serratia in 1 h and destroyed the DNA of Serratia in 3 h, but not 1 or 2 h. DNA AWAY™ killed Serratia and destroyed the DNA of both Serratia and the vent microbe (GB-D) of the genus Pyrococcus in 1 h.     

The role of combined laser scanning and video techniques in monitoring wave-by-wave swash zone processes

Simulating swash zone morphodynamics remains one of the major weaknesses of beach evolution models. One of the reasons is the limited availability of data on morphological changes at the temporal scales of individual swash events. This paper sets out to present a new hybrid system, consisting of 2D/3D laser scanners and several video cameras, which was designed to monitor swash zone topographic change on a wave-by-wave basis. A methodology is proposed consisting of sensor calibration and several data processing steps, allowing a fusion of different sensors. Such an approach can improve the performance of several field/laboratory, optical technique applications for nearshore hydro- and morpho-dynamic measurements. Digital Elevation Models from a 3D scanner were used in the extrinsic camera calibration procedure and reduced the geo-rectification errors from 0.035 m < RMSE < 0.071 m to 0.008 m < RMSE < 0.013 m. The 2D scanner provided instantaneous measurements of the water and dry beach surface elevation along a 10 m cross-shore section, and comparison with ultrasonic sensor measurements resulted in RMS errors within the 1.7 cm < RMSE < 3.2 cm range. The combination of 2D scanner and video data (i) reduced geo-rectification errors by more than one order of magnitude; and (ii) made 2D laser point cloud processing easier and more robust. The hybrid monitoring system recorded the morphological change of a replenished beach-face on a wave-by-wave basis, during large-scale, physical modeling experiments and the observations showed that individual swash events could result in elevation changes up to dz = ± 10 cm. The sediment transport direction and intensity of the monitored swash events was relatively balanced and sediment transport rates ranged between − 3.5 kg m^− 1 s^− 1 > Q_t > 3.5 kg m^− 1 s^− 1. Extreme transport swash events became rarer as the morphology was reaching equilibrium.     

Geometry and migration characteristics of bedforms under waves and currents: Part 2: Ripples superimposed on sandwaves

This paper presents results of a series of detailed measurements of geometric and migrating characteristics of ripples superimposed upon sandwaves under the action of combined waves and currents. Velocity measurements within the fluid, surface wave characteristics and 3D mapping of the bottom were recorded with an Acoustic Doppler Velocimeter (ADV), an acoustic water level sensor and a 32 composite element array of sub-aquatic acoustic sensors, respectively. Bottom records were statistically analyzed to obtain height, length and migration rates of ripples. Experiments examined ripple heights and wavelengths for the mobility factors (as defined in Eq. (4)) and the Reynolds wave number within the ranges 10 < ψ < 88 and 16 × 10³ < Re_w < 5 × 10⁵, respectively. Measured values were compared with laboratory and field data together with semi-empirical and analytical formulae from the literature. Good correlation was obtained when plotting measured ripple length and length in dimensionless form as a function of the Reynolds wave number Re_w. Under a given hydraulic condition, it was observed that ripples with different geometric characteristics may coexist at different locations over the sandwave. Ripple steepness is presented as a function of the Shields parameter although characterized with rather large scatter. Finally, average ripple migration speed is presented as a function of the Shields parameter and the mobility number.     

Contrasting life-histories,secondary production,and trophic structure of Peracarid assemblages of the bathyal suprabenthos from the Bay of Biscay (NE Atlantic) and the Catalan Sea (NW Mediterranean)

The life-histories and the secondary production of four dominant peracarid crustaceans (the mysids Boreomysis arctica and Parapseudomma calloplura, the amphipod Rhachotropis caeca, and the isopod Ilyarachna longicornis) in bathyal depths of the Bay of Biscay (NE Atlantic; between 383 and 420 m) and the Catalan Sea (Northwestern Mediterranean; between 389 and 1355 m) were established. Both the Atlantic and the Mediterranean populations of the major part of the target-species had two generations/year with mean cohort-production intervals (CPI) ranging from 5.5 mo for Ilyarachna longicornis to 6.3 mo for Parapseudomma calloplura. The Hynes method showed secondary production to vary in the Bay of Biscay between 0.113 mg DW m⁻² yr⁻¹ for I. longirostris and 3.069 mg DW m⁻² yr⁻¹ for P. calloplura, with P/B ratios between 4.57 (I. longirostris) and 7.93 (Boreomysis arctica). In the Catalan Sea, production varied between 0.286 mg DW m⁻² yr⁻¹ for I. longirostris and 1.096 mg DW m⁻² yr⁻¹ for P. calloplura, with P/B between 5.72 (I. longirostris) and 6.66 (P. calloplura). Application of two different empiric models to the whole peracarid assemblage gave similar levels of secondary production in both study areas (between 29.26 and 32.14 mgDWm⁻² yr⁻¹ in the Bay of Biscay; between 26.23 and 26.54 mg DW m⁻² yr⁻¹ in the Catalan Sea). From the analysis of gut contents of 22 species the dominant species in each study area were assigned to two basic trophic levels, detritus feeders and predators. Also, cumulative curves of dominance showed high diversity (low dominance) for peracarid assemblages distributed at mid-bathyal depths (524–693 m) both in the Bay of Biscay off Arcachon and in the Catalan Sea off Barcelona. We also discuss and compare, both within and between areas, how environmental features may explain the observed diversity patterns, the trophic structure, and the production results obtained for the suprabenthos assemblages.     

Export fluxes of particulate organic carbon in the Chukchi Sea: A comparative study using 234Th/238U disequilibria and drifting sediment traps

Large-volume sampling of ²³⁴Th and drifting sediment trap deployments were conducted as part of the 2004 Western Arctic Shelf–Basin Interactions (SBI) spring (May 15–June 23) and summer (July 17–August 26) process cruises in the Chukchi Sea. Measurements of ²³⁴Th and particulate organic carbon (POC) export fluxes were obtained at five stations during the spring cruise and four stations during the summer cruise along Barrow Canyon (BC) and along a parallel shelf-to-basin transect from East Hanna Shoal (EHS) to the Canada Basin. ²³⁴Th and POC fluxes obtained with in situ pumps and drifting sediment traps agreed to within a factor of 2 for 70% of the measurements. POC export fluxes measured with in situ pumps at 50 m along BC were similar in spring and summer (average = 14.0 ± 8.0 mmol C m^− 2 day^− 1 and 16.5 ± 6.5 mmol C m^− 2 day^− 1, respectively), but increased from spring to summer at the EHS transect (average = 1.9 ± 1.1 mmol C m^− 2 day^− 1 and 19.5 ± 3.3 mmol C m^− 2 day^− 1, respectively). POC fluxes measured with sediment traps at 50 m along BC were also similar in both seasons (31.3 ± 9.3 mmol C m^− 2 day^− 1 and 29.1 ± 14.2 mmol C m^− 2 day^− 1, respectively), but were approximately twice as high as POC fluxes measured with in situ pumps. Sediment trap POC fluxes measured along the EHS transect also increased from spring to summer (3.0 ± 1.9 mmol C m^− 2 day^− 1 and 13.0 ± 6.4 mmol C m^− 2 day^− 1, respectively), and these fluxes were similar to the POC fluxes obtained with in situ pumps. Discrepancies in POC export fluxes measured using in situ pumps and sediment traps may be reasonably explained by differences in the estimated POC/²³⁴Th ratios that arise from differences between the techniques, such as time-scale of measurement and size and composition of the collected particles. Despite this variability, in situ pump and sediment trap-derived POC fluxes were only significantly different at a highly productive station in BC during the spring.     

Oxygen distribution and aerobic respiration in the north and south eastern tropical Pacific oxygen minimum zones

Highly sensitive STOX O₂ sensors were used for determination of in situ O₂ distribution in the eastern tropical north and south Pacific oxygen minimum zones (ETN/SP OMZs), as well as for laboratory determination of O₂ uptake rates of water masses at various depths within these OMZs. Oxygen was generally below the detection limit (few nmol L⁻¹) in the core of both OMZs, suggesting the presence of vast volumes of functionally anoxic waters in the eastern Pacific Ocean. Oxygen was often not detectable in the deep secondary chlorophyll maximum found at some locations, but other secondary maxima contained up to ~0.4 µmol L⁻¹. Directly measured respiration rates were high in surface and subsurface oxic layers of the coastal waters, reaching values up to 85 nmol L⁻¹ O₂ h⁻¹. Substantially lower values were found at the depths of the upper oxycline, where values varied from 2 to 33 nmol L⁻¹ O₂ h⁻¹. Where secondary chlorophyll maxima were found the rates were higher than in the oxic water just above. Incubation times longer than 20 h, in the all-glass containers, resulted in highly increased respiration rates. Addition of amino acids to the water from the upper oxycline did not lead to a significant initial rise in respiration rate within the first 20 h, indicating that the measurement of respiration rates in oligotrophic Ocean water may not be severely affected by low levels of organic contamination during sampling. Our measurements indicate that aerobic metabolism proceeds efficiently at extremely low oxygen concentrations with apparent half-saturation concentrations (K_m values) ranging from about 10 to about 200 nmol L⁻¹.     

Total organic and inorganic carbon exchange through the Strait of Gibraltar in September 1997

The total organic carbon (TOC) and total inorganic carbon (C_T) exchange between the Atlantic Ocean and the Mediterranean Sea was studied in the Strait of Gibraltar in September 1997. Samples were taken at eight stations from western and eastern entrances of the Strait and at the middle of the Strait (Tarifa Narrows). TOC was analyzed by a high-temperature catalytic oxidation method, and C_T was calculated from alkalinity–pH_T pairs and appropriate thermodynamic relationships. The results are used in a two-layer model of water mass exchange through the Strait, which includes the Atlantic inflow, the Mediterranean outflow and the interface layer in between. Our observations show a decrease of TOC and an increase of C_T concentrations from the surface to the bottom: 71–132 μM C and 2068–2150 μmol kg⁻¹ in the Surface Atlantic Water, 74–95 μM C and 2119–2148 μmol kg⁻¹ in the North Atlantic Central Water, 63–116 μM C and 2123–2312 μmol kg⁻¹ in the interface layer, and 61–78 μM C and 2307–2325 μmol kg⁻¹ in the Mediterranean waters. However, within the Mediterranean outflow, we found that the concentrations of carbon were higher at the western side of the Strait (75–78 μM C, 2068–2318 μmol kg⁻¹) than at the eastern side (61–69 μM C, 2082–2324 μmol kg⁻¹). This difference is due to the mixing between the Atlantic inflow and the Mediterranean outflow on the west of the Strait, which results in a flux of organic carbon from the inflow to the outflow and an opposite flux of inorganic carbon. We estimate that the TOC input from the Atlantic Ocean to the Mediterranean Sea through the Strait of Gibraltar varies from (0.97±0.8)10⁴ to (1.81±0.90)10⁴ mol C s⁻¹ (0.3×10¹² to 0.56×10¹² mol C yr⁻¹), while outflow of inorganic carbon ranges from (12.5±0.4)10⁴ to (15.6±0.4)10⁴ mol C s⁻¹ (3.99–4.90×10¹² mol C yr⁻¹). The high variability of carbon exchange within the Strait is due to the variability of vertical mixing between inflow and outflow along the Strait. The prevalence of organic carbon inflow and inorganic carbon outflow shows the Mediterranean Sea to be a basin of active remineralization of organic material.     

Reconnaissance dating: A new radiocarbon method applied to assessing the temporal distribution of Southern Ocean deep-sea corals

We have developed a rapid ‘reconnaissance’ method of preparing graphite for ¹⁴C/¹²C analysis. Carbonate (～15 mg) is combusted using an elemental analyzer and the resulting CO₂ is converted to graphite using a sealed tube zinc reduction method. Over 85% (n=45 replicates on twenty-one individual corals) of reconnaissance ages measured on corals ranging in age from 500 to 33,000 radiocarbon years (Ryr) are within two standard deviations of ages generated using standard hydrolysis methods on the same corals, and all reconnaissance ages are within 300 Ryr of the standard hydrolysis ages. Replicate measurements on three individual aragonitic corals yielded ages of 1076±35 Ryr (standard deviation; n=5), 10,739±47 Ryr (n=8), and 40,146±3500 Ryr (n=9). No systematic biases were found using different cleaning methods or variable sample sizes. Analysis of ¹³C/¹²C was made concurrently with the ¹⁴C/¹²C measurement to correct for natural fractionation and for fractionation during sample processing and analysis. This technique provides a new, rapid method for making accurate, percent-level ¹⁴C/¹²C analyses that may be used to establish the rates and chronology of earth system processes where survey-type modes of age estimation are desirable. For example, applications may include creation of sediment core-top maps, preliminary age models for sediment cores, and growth rate studies of marine organisms such as corals or mollusks. We applied the reconnaissance method to more than 100 solitary deep-sea corals collected in the Drake Passage in the Southern Ocean to investigate their temporal and spatial distribution. The corals used in this study are part of a larger sample set, and the subset that was dated was chosen based on species as opposed to preservation state, so as to exclude obvious temporal biases. Similar to studies in other regions, the distribution of deep-sea corals is not constant through time across the Drake Passage. Most of the corals from the Burdwood Bank (continental shelf of Argentina) have ages ranging between 0 and 2500 calendar years, whereas most of the corals from the Sars Seamount in the Drake Passage have ages between 10,000 and 12,500 calendar years. Such differences may be caused in part by sampling biases, but may also be caused by changes in larval transport, nutrient supply, or other environmental pressures.     

Zooplankton associated with the oxygen minimum zone system in the northern upwelling region of Chile during March 2000

Zooplankton in the coastal upwelling region off northern Chile may play a significant biogeochemical role by promoting carbon flux into the subsurface OMZ (oxygen minimum zone). This work identifies the dominant zooplankton species inhabiting the area influenced by the OMZ in March 2000 off Iquique (20°S, northern Chile). Abundance and vertical distribution studies revealed 17 copepod and 9 euphausiid species distributed between the surface and 600 m at four stations sampled both by day and by night. Some abundant species remained in the well-oxygenated upper layer (30 m), with no evidence of diel vertical migration, apparently restricted by a shallow (40–60 m) oxycline. Other species, however, were found closely associated with the OMZ. The large-sized copepod Eucalanus inermis was found below the oxycline and performed diel vertical migrations into the OMZ, whereas the very abundant Euphausia mucronata performed extensive diel vertical migrations between the surface waters and the core of the OMZ (200 m), even crossing it. A complete assessment of copepods and euphausiids revealed that the whole sampled water column (0–600 m) is occupied by distinct species having well-defined habitats, some of them within the OMZ. Ontogenetic migrations were evident in Eucalanidae and E. mucronata. Estimates of species biomass showed a substantial (>75% of total zooplankton biomass) daily exchange of C between the photic layer and the OMZ. Both E. inermis and E. mucronata can actively exchange about 37.8 g C m⁻² d⁻¹ between the upper well-oxygenated (0–60 m) layer and the deeper (60–600 m) OMZ layer. This migrant biomass may contribute about 7.2 g C m⁻² d⁻¹ to the OMZ system through respiration, mortality, and production of fecal pellets within the OMZ. This movement of zooplankton in and out of the OMZ, mainly as a result of the migratory behavior of E. mucronata, suggests a very efficient mechanism for introducing large amounts of freshly produced carbon into the OMZ system and should, therefore, be considered when establishing C budgets for coastal upwelling systems.     

Short-term environmental variability in cold-water coral habitat at Viosca Knoll,Gulf of Mexico

The Lophelia pertusa community at Viosca Knoll (VK826) is the most extensive found to date in the Gulf of Mexico. As part of a multi-disciplinary study, the physical setting of this area was described using benthic landers, CTD transects and remotely operated vehicle observations. The site was broadly characterised into three main habitats: (1) dense coral cover that resembles biogenic reef complexes, (2) areas of sediment, and (3) authigenic carbonate blocks with sparse coral and chemosynthetic communities. The coral communities were dominated by L. pertusa but also contained numerous solitary coral species. Over areas that contained L. pertusa, the environmental conditions recorded were similar to those associated with communities in the north-eastern Atlantic, with temperature (8.5–10.6 °C) and salinity (～35) falling within the known species niche for L. pertusa. However, dissolved oxygen concentrations (2.7–2.8 ml l^?1) and density (σ_Θ, 27.1–27.2 kg m^?3) were lower and mass fluxes from sediment trap data appeared much higher (4002–4192 mg m^?2 d^?1). Yet, this species still appears to thrive in this region, suggesting that L. pertusa may not be as limited by lower dissolved oxygen concentrations as previously thought. The VK826 site experienced sustained eastward water flow of 10–30 cm s^?1 over the 5-day measurement period but was also subjected to significant short-term variability in current velocity and direction. In addition, two processes were observed that caused variability in salinity and temperature; the first was consistent with internal waves that caused temperature variations of 0.8 °C over 5–11 h periods. The second was high-frequency variability (20–30 min periods) in temperature recorded only at the ALBEX site. A further pattern observed over the coral habitat was the presence of a 24 h diel vertical migration of zooplankton that may form part of a food chain that eventually reaches the corals. The majority of detailed studies concerning local environmental conditions in L. pertusa habitats have been conducted within the north-eastern Atlantic, limiting most knowledge of the niche of this species to a single part of an ocean basin. Data presented here show that the corals at VK826 are subjected to similar conditions in temperature, salinity, and flow velocity as their counterparts in the north-east Atlantic, although values for dissolved oxygen and density (sigma-theta: σ_Θ) are different. Our data also highlight novel observations of short-term environmental variability in cold-water coral habitat.     

Kinetic study reveals weak Fe-binding ligand,which affects the solubility of Fe in the Scheldt estuary

The chemistry of dissolved Fe(III) was studied in the Scheldt estuary (The Netherlands). Two discrete size fractions of the dissolved bulk (< 0.2 μm and < 1 kDa) were considered at three salinities (S = 26, 10 and 0.3).Within the upper estuary, where fresh river water meets seawater, the dissolved Fe concentration decreases steeply with increasing salinity, for the fraction < 0.2 μm from 536 nM at S = 0.3 to 104 nM at S = 10 and for the fraction < 1 kDa from 102 nM to 36 nM Fe. Further downstream, in the middle and lower estuary, this decrease in the Fe concentration continues, but is far less pronounced. For all samples, the traditionally recognised dissolved strong organic Fe-binding ligand concentrations are lower than the dissolved Fe concentrations.Characteristics of dissolved Fe-binding ligands were determined by observing kinetic interactions with adsorptive cathodic stripping voltammetry. From these kinetic experiments we concluded that apart from the well-known strong Fe-binding organic ligands (L, logK′ = 19–22) also weak Fe-binding ligands (P) existed with an α value (binding potential = K′ · [P]) varying between 10^11.1 and 10^11.9. The presence of this relatively weak ligand explained the high concentrations of labile Fe present in both size fractions in the estuary. This weak ligand can retard or prevent a direct precipitation after an extra input of Fe.The dissociation rate constants of the weak ligand varied between 0.5 × 10^− 4 and 4.3 × 10^− 4 s^− 1. The rate constants of the strong organic ligand varied between k_d = 1.5 × 10^− 3–17 × 10^− 2 s^− 1 and k_f = 2.2 × 10⁸–2.7 × 10⁹ M^− 1 s^− 1. The dissociation rate constant of freshly amorphous Fe-hydroxide was found to be between 4.3 × 10^− 4 and 3.7 × 10^− 3 s^− 1, more labile or equal to the values found by Rose and Waite [Rose, A.L., Waite, T.D., 2003a. Kinetics of hydrolysis and precipitation of ferric iron in seawater. Environ. Sci. Technol., 37, 3897–3903.] for freshly precipitated Fe in seawater.Kinetic rate constants of Fe with the ligand TAC (2-(2-Thiazolylazo)-p-cresol) were also determined. The formation rate constant of Fe(TAC)₂ varied between 0.1 × 10⁸ and 3.6 × 10⁸ M^− 1 s^− 1, the dissociation rate constant between 0.2 × 10^− 5 and 17 × 10^− 5 s^− 1 for both S = 26 and S = 10. The conditional stability constant of Fe(TAC)₂ (β_Fe(TAC)2′) varied between 22 and 23.4 for S = 10 and S = 26 more or less equal to that known from the literature (logβ_Fe(TAC)2′ = 22.4; [Croot, P.L., Johansson, M., 2000. Determination of iron speciation by cathodic stripping voltammetry in seawater using the competing ligand 2-(2-Thiazolylazo)-p-cresol (TAC). Electroanalysis, 12, 565–576.]). However, at S = 0.3 the logβ_Fe(TAC)2′ was 25.3, three orders of magnitude higher. Apparently the application of TAC to samples of low salinity can only be done when the correct β_Fe(TAC)2′ is known.     

Influence of surface forcing on near-surface and mixing layer turbulence in the tropical Indian Ocean

An autonomous upwardly-moving microstructure profiler was used to collect measurements of the rate of dissipation of turbulent kinetic energy (ε) in the tropical Indian Ocean during a single diurnal cycle, from about 50 m depth to the sea surface. This dataset is one of only a few to resolve upper ocean ε over a diurnal cycle from below the active mixing layer up to the air–sea interface. Wind speed was weak with an average value of ~5 m s⁻¹ and the wave field was swell-dominated. Within the wind and wave affected surface layer (WWSL), ε values were on the order of 10⁻⁷–10⁻⁶ W kg⁻¹ at a depth of 0.75 m and when averaged, were almost a factor of two above classical law of the wall theory, possibly indicative of an additional source of energy from the wave field. Below this depth, ε values were closer to wall layer scaling, suggesting that the work of the Reynolds stress on the wind-induced vertical shear was the major source of turbulence within this layer. No evidence of persistent elevated near-surface ε characteristic of wave-breaking conditions was found. Profiles collected during night-time displayed relatively constant ε values at depths between the WWSL and the base of the mixing layer, characteristic of mixing by convective overturning. Within the remnant layer, depth-averaged values of ε started decaying exponentially with an e-folding time of 47 min, about 30 min after the reversal of the total surface net heat flux from oceanic loss to gain.