Coral bleaching and habitat effects on colonisation of reef fish assemblages: An experimental study

Degradation and mortality of corals is increasing worldwide and is expected to have significant effects on coral reef fish; hence studies on these effects are essential. In the present study, a field experiment was set up within Mafia Island Marine Park in Tanzania (East Africa) to examine the effects of bleaching and habitat structure on colonisation of coral reef fish assemblages. Live and bleached staghorn coral Acropora formosa was transplanted onto plots in a site dominated by sand and rubble, and the experimental design comprised of three treatments: live coral, bleached coral and eroded coral rubble. There was an immediate increase (within 24 h) in fish abundance and diversity in the two treatments with standing corals. Overall, live and bleached coral plots showed similar effects, but differed from the eroded coral plots which had a much lower abundance and diversity of fish. In general, fish species diversity changed with time over the study period while fish abundance did not. Multivariate analyses showed that while there were differences in fish assemblage structure between standing corals and the eroded coral treatment, there was neither a difference between live and bleached coral treatments nor any temporal effects on fish assemblage structure. Our findings suggest that physical structure and complexity of habitat have stronger effects on colonisation of reef fish assemblages than changes in coral health (such as bleaching) which do not affect coral structure. This may have important implications for appropriate coral reef management.     

Relative and combined effects of habitat and fishing on reef fish communities across a limited fishing gradient at Ningaloo

Habitat degradation and fishing are major drivers of temporal and spatial changes in fish communities. The independent effects of these drivers are well documented, but the relative importance and interaction between fishing and habitat shifts is poorly understood, particularly in complex systems such as coral reefs. To assess the combined and relative effects of fishing and habitat we examined the composition of fish communities on patch reefs across a gradient of high to low structural complexity in fished and unfished areas of the Ningaloo Marine Park, Western Australia. Biomass and species richness of fish were positively correlated with structural complexity of reefs and negatively related to macroalgal cover. Total abundance of fish was also positively related to structural complexity, however this relationship was stronger on fished reefs than those where fishing is prohibited. The interaction between habitat condition and fishing pressure is primarily due to the high abundance of small bodied planktivorous fish on fished reefs. However, the influence of management zones on the abundance and biomass of predators and target species is small, implying spatial differences in fishing pressure are low and unlikely to be driving this interaction. Our results emphasise the importance of habitat in structuring reef fish communities on coral reefs especially when gradients in fishing pressure are low. The influence of fishing effort on this relationship may however become more important as fishing pressure increases.     

Ecology of rocky reef fish of northeastern New Zealand: 50 years on

Abstract

This review examines the history and current understanding of the ecology of rocky reef fishes in northeastern New Zealand, marking the fiftieth anniversary of the Leigh Marine Laboratory. The cumulative number of publications increased steadily to c. 180 by 2012. Most attention has been on the snapper (Pagrus auratus, f. Sparidae), the largest in size and economically most important species, and on triplefins (Tripterygiidae), the smallest in size and most diverse family. A strong quantitative school emerged in the 1980s, a period when there was little research on temperate reef fishes elsewhere. A ‘bottom-up’ view of the effects of habitat structure on fish emerged, identifying the key roles of depth, topography and macroalgae. By 2000, attention shifted to using marine reserves as laboratories for ecological research. A ‘top-down’ view of fish as predators emerged, documenting cascading effects on prey communities and habitats. The two different viewpoints have not yet been integrated. Research gaps, including population connectivity and climate change, represent major challenges for the next 50 years.     

Spatial and temporal changes in reef fish assemblages on disturbed coral reefs,north Pacific coast of Costa Rica

Benthic structure of coral reefs determines the availability of refuges and food sources. Therefore, structural changes caused by natural and anthropogenic disturbances can have negative impacts on reef‐associated communities. During the 1990s, coral reefs from Bahía Culebra were considered among the most diverse ecosystems along the Pacific coast of Costa Rica; however, recently they have undergone severe deterioration as consequence of chronic stressors such as El Niño‐Southern Oscillation and harmful algal blooms. Reef fish populations in this area have also been intensely exploited. This study compared reef fish assemblages during two periods (1995–1996 and 2014–2016), to determine whether they have experienced changes as a result of natural and anthropogenic disturbances. For both periods, benthic composition and reef fish abundance were recorded using underwater visual censuses. Live coral cover (LCC) decreased from 43.09 ± 18.65% in 1995–1996 to 1.25 ± 2.42% in 2014–2016 (U = 36, p < 0.05). Macroalgal cover (%) in 2014–2016 was sixfold higher than mean values reported for the Eastern Tropical Pacific region. Mean (±SD) fish species richness in 1995–1996 (36.67 ± 14.20) was higher than in 2014–2016 (23.00 ± 9.14; U = 20, p < 0.05). Over 40% of reef fish orders observed in 1995–1996 were not detected in the 2014–2016 surveys, including large‐bodied predators. Reduction in abundance of fish predators such as sharks, grunts, and snappers is likely attributed to changes in habitat structure. Herbivorous such as parrotfishes and pufferfishes increased their abundance at sites with low LCC, probably in response to predators decline and increased algal cover. These findings revealed significant degradation and drastic loss of structural complexity in coral reefs from Bahía Culebra, which now are dominated by macroalgae. The large reduction in structural complexity of coral reefs has resulted in the loss of diversity and key ecological roles (e.g., predation and herbivory), thus potentially reducing the resilience of the entire ecosystem.     

Seasonal and ontogenetic patterns of habitat use in coral reef fish juveniles

We investigated the diversity of patterns of habitat use by juveniles of coral reef fishes according to seasons and at two spatial scales (10–100 m and 1–10 km). We conducted underwater visual censuses in New Caledonia's Lagoon between 1986 and 2001. Co-inertia analyses highlighted the importance of mid-shelf habitats at large spatial scale (1–10 km) and of sandy and vegetated habitats at small spatial scale (10–100 m) for most juveniles. Among all juvenile species, 53% used different habitats across seasons (e.g. Lutjanus fulviflamma and Siganus argenteus) and 39% used different habitats as they grow (e.g. Lethrinus atkinsoni and Scarus ghobban). During their ontogeny, at large and small scales, respectively, 21% and 33% of the species studied showed an increase in the number of habitats used (e.g. L. fulviflamma, L. atkinsoni), 10% and 3% showed a decrease in the number of habitats used (e.g. Amphiprion melanopus, Siganus fuscescens), 23% and 3% showed a drastic change of habitat used (e.g. S. ghobban, Scarus sp.) whereas 46% and 61% showed no change of habitat used (e.g. Lethrinus genivittatus, Ctenochaetus striatus). Changes in habitat use at both small and large spatial scales occurred during the ontogeny of several species (e.g. S. ghobban, Scarus sp.). Results pointed out the different spatial and temporal scales of juvenile habitat use to account for in conservation decisions regarding both assemblage and species-specific levels.     

Horizontal spatial and temporal distribution patterns of nearshore larval fish assemblages at a temperate rocky shore

There have been no previous studies of the composition of nearshore larval fish assemblages along the coast of Portugal. We aimed to describe the composition and horizontal distribution patterns of larval fish assemblages and their temporal dynamics near a rocky reef at depths shallower than 13 m (inshore) and at two miles (3.70 km) from shore (offshore), as well as along transects perpendicular to the shoreline, from the reef to 10 miles offshore (18.52 km). Samples were taken using 5 min sub-surface trawls at the rocky shore of the Arrábida Marine Park (W Portugal). A total of 1021 larvae were collected, belonging to 61 taxa inshore and to 29 taxa offshore. Along transects, 626 larvae of 52 taxa were collected. Most larvae belonged to coastal species associated with rocky reefs. Total larval abundance and diversity were higher from May to July, which is consistent with the spawning activity of adults. Diversity and total larval abundance decreased significantly with increasing distance from shore, both in the inshore/offshore comparison and in the transects, where this decrease was evident at a very small spatial scale (within the first mile from the reef). Species assemblages differed in the pattern of distribution, with most species clearly associated to the extreme nearshore. The distribution patterns obtained were independent of the spawning mode of species. Results are discussed in the light of the possible physical mechanisms that can potentially act at the Arrábida Marine Park to facilitate larvae retention and the role of larval behaviour.     

Food utilisation by coastal fish assemblages in rocky and soft bottoms on the Swedish west coast: Inference for identification of essential fish habitats

The concept of essential fish habitats (EFHs) is widely accepted for conservational and management purposes. EFHs are often considered as high quality habitats for fisheries species and subsequently of high values for society. In this study, fish and Substrate-Associated Prey (SAP) were sampled during the productive summer season 1998 (fish) and 2003 and 2004 (SAP) in shallow coastal rocky- and soft-bottom habitats on the Swedish west coast. The aim was to study the spatial and monthly variation of SAP as well as abundance and biomass of fish, and to examine if food items found in the diet of the fish assemblage were derived from SAP. We also examined if the diet of Ctenolabrus rupestris, a resident and abundant fish species in the shallow coastal habitats, and the diet of four seasonally abundant and commercially important fish species (Gadus morhua, Pleuronectes platessa, Salmo trutta and Scomber scombrus) were derived from SAP. There were significantly higher mean species number and abundance of the SAP assemblage on rocky compared to soft bottoms and the highest values were found on the rocky bottoms in August and in the shallowest (0–3 m) depth strata. There were no significant differences in number of fish species caught in the two habitats, although mean number of fish and mean biomass were significantly higher on rocky bottoms. Both habitats showed the same seasonal variation and the highest values of number of fish species, abundance and biomass were observed in June. On rocky bottoms, gastropods and amphipods were the most frequent food items in the diet of the entire fish assemblage and these items were also the most abundant SAP in this habitat. The dominant food items of the soft-bottom fish assemblage were decapods and fish, which were not common SAP. However, except for S. scombrus, the diet of the selected fish species showed a strong association to the SAP availability. Gadus morhua displayed the strongest association to SAP on rocky bottoms and P. platessa and C. rupestris to SAP on soft bottoms. Further, for C. rupestris, multivariate statistical analysis showed a significant association to the SAP assemblage on both rocky and soft bottoms. These results provide vital new information for the management and conservation of Essential Fish Habitats on the Swedish west coast.     

Redundancy and diversity of functional reef fish groups of the Mexican Eastern Pacific

Coral reefs are in crisis worldwide. Fish play a key role in the resilience of reefs because most of the biomass of the ecosystem flows through them. Evidence indicates that the response to stressors will vary markedly depending on the resilience of the ecosystem. In order to assess the functional groups of reef fishes, morphometric and ecomorphological analyses were carried out on the shape and diet of 117 reef fish species from the Mexican Eastern Pacific (MEP) from 23°N to 15°N, spanning the years 2009–2012. Six trophic groups were identified and subdivided into 19 functional groups: (A) detritus and plants consumers, three morphologies; (B) plants and zoobenthos consumers, four morphologies; (C) zoobenthos consumers, two morphologies; (D) zoobenthos and zooplankton consumers, three morphologies; (E) zooplankton and nekton consumers, three morphologies; and (F) nekton consumers, four morphologies. Our main conclusions are: (i) fish communities of the MEP have a high degree of ecological redundancy; (ii) fish diversity is not related to the coral cover; and (iii) the combination of using both morphology and diet produce a more effective classification of functional groups. Future studies such as these will allow a deeper understanding of environment and it will help illuminate the effects of fish morphology and diet on population structure.     

长山列岛邻近海域鱼类群落功能多样性的季节和空间变化

为查明黄、渤海生态交错带长山列岛邻近海域鱼类功能多样性的时空变化,根据2016−2017年在长山列岛邻近海域开展的鱼类生物资源和环境因子的调查数据,结合食性、营养级、洄游类型、适温性、恢复力和鱼卵类型等13种功能性状,应用群落特征加权平均数指数、功能多样性指数和Spearman秩相关分析等方法,研究了该海域鱼类功能多样性的季节变化、空间格局及其与环境因子的关系。结果表明,春、冬季的优势类群为端位或上位口、生长系数较低、脆弱性较高、恢复力较低、定居或短距离洄游的平扁形、暖温性底层鱼类,夏、秋季表现出更多的功能性状,例如长距离洄游、栖息位置处于中上层、体型为侧扁形和纺锤形等;夏、秋季的功能丰富度指数显著高于春、冬季,功能均匀度指数在春季最高,功能离散度指数在秋季最低且显著低于其他季节;春季功能均匀度指数和春、秋季功能离散度指数均表现出西高东低的分布趋势,夏、冬季的功能丰富度指数和秋季的功能均匀度指数均表现出东高西低的分布趋势;功能多样性指数与环境因子具有一定的相关性。长山列岛邻近海域作为黄、渤海生态交错带,鱼类洄游引起优势功能性状和功能多样性呈现出一定的季节变化,环境因子的变化使得功能多样性的空间格局表现出复杂性、异质性的特点。     

Method‐dependent influence of environmental variables on reef fish assemblages when comparing trap and video surveys

Despite substantial survey effort and a large body of literature on abiotic and biotic factors in temperate reef ecosystems, knowledge of the complex and interactive effects of environmental variables on those communities is limited. Various survey methods have been developed to study environmental predictors of biodiversity, but there remains a gap in our understanding of how survey results are influenced by environmental factors. Here, we surveyed the fish assemblage associated with southeastern U.S. temperate marine reefs with simultaneous, paired trap, and camera gears throughout a ~50,000 km² area during 2011–2013 and assessed the influence of environmental variables on the trap‐ and video‐surveyed assemblages. Predictor variables in the multivariate general linear models included depth, temperature, month, year, location, substrate relief, percent sessile biota, biota type, and turbidity. Depth and latitude had the greatest influence on the fish assemblage for both gears. The influence of habitat variables differed between methods and percent biota explained more variation in the fish assemblage when assessed by traps, while substrate relief and biota type explained more variation in the fish assemblage when assessed by video. In general, habitat complexity was positively related to the abundance of fishes in the video survey, but there was a negative relationship in the trap survey. Differences between gears were species‐specific and the influences of environmental variables were similar for some species such as Haemulon plumierii and Hyporthodus niveatus. The methods presented here can be used to assess method‐dependent differences in fish assemblages, which is a necessary precursor to assess the effect of environmental variables on the accuracy of surveys.     

Changes over a decade in fish assemblages exposed to both environmental and fishing constraints in the Sine Saloum estuary (Senegal)

To investigate the changes in the fish assemblage of the Sine Saloum estuary (Senegal) over a 10-year period, it was surveyed during a complete hydrological cycle (three principal hydro-climatic seasons) first in 1992 and then in 2002–2003. The sampling protocol for the two surveys was identical, using the same sampling technique, the same collection periods, and the same sampling stations.     

Composition, structural characteristics and temporal patterns of fish assemblages in non-tidal Mediterranean lagoons: A case study

The importance of transitional water ecosystems as nursery habitats and feeding grounds for fish species is well-known. Detailed studies of colonization patterns of fish guilds in response to biotic and abiotic drivers are however unevenly distributed among ecosystem types. We address here the temporal variability of fish assemblages in small non-tidal lagoons in the Mediterranean basin. The study was carried out at the Acquatina lagoon (Lecce, Italy) where four stations, situated in two habitat types along a confinement gradient, were sampled twice per month for one year with fyke nets. Forty-five taxa ranging across 20 families were collected, with the most abundant species, Atherina boyeri, accounting for more than 95% of total abundance. Pooling all species together (excluding sand smelt), the structural features of the assemblage, relative abundance of families, and abundance of individual species all showed significant temporal patterns. Mean abundance peaked in Summer and Autumn and fell in Winter, whereas taxonomic richness and diversity were highest in Summer and lowest in Spring. Within the fish assemblage, multivariate ordination showed temporal segregation of species belonging to the same family or genus and expected to be functionally similar, suggesting that they avoid competition for space and resources by timing inward migration and peak occurrence differently. Of the environmental driving forces, which also showed temporal patterns of variation, salinity was the main factor affecting the distribution of individuals and species. The catch of young individuals of several marine species confirmed the role of this small lagoon as a nursery and feeding area, and emphasized the need for further studies.     

Tracing value chains to understand effects of trade on coral reef fish in Zanzibar,Tanzania

Coral reef fish are an important source of food security and income for human coastal populations. They also underpin ecosystem processes vital for the future ability of coral reefs to generate ecological goods and services. Identifying socio-economic drivers behind the exploitation of fish that uphold these key ecosystem processes and the scales at which they operate is therefore critical for successful management. This study addresses this issue by examining the reef-associated fish value chain in Zanzibar, and how it links to functional groups of fish and maturity stage of fish within these groups. Semi-structured interviews with 188 respondents (fishers, traders and hotel staff) involved in the fisheries and trade with reef-associated fish in Zanzibar and participatory observations were used. The trade with reef fish in Zanzibar is a complex structure involving many different agents and this study shows that these different agents exhibit differential “preferences” regarding fish functional groups and/or maturity stages within these groups. Consequently, both high and low trophic species, as well as small and large fishes are fished and sold, which leaves no refuge for the fish assemblage to escape fishing. When other market agents than fishers have so much influence and there are few alternative income generating activities, it is not possible to put all burden on fishers. Management measures that extend down the value chain to include all market agents as well as their links to ecosystem processes are thus likely to be needed to reach the target of sustainable fisheries.     

Seasonal use of coastal resources by otters: Comparing sandy and rocky stretches

Seasonal patterns of use of coastal resources by otters have been studied, simultaneously performing diet analyses and spraint counts (expressed as marking intensity, MI). In spite of the small size of the study area, two different sectors could be clearly identified, a sandy and a rocky one. The origin (freshwater or coastal) of most prey types could also be determined. Surveys were performed bimonthly and classified as autumn–winter (A–W) or spring–summer (S–S).In the sandy sector, eels, flatfish and grey mullets were more frequently consumed in A–W, while crayfish was more frequently consumed in S–S. None of the identified prey types in the rocky sectors showed different frequency of occurrence values between the two periods. In this sector otter fed mainly on coastal prey throughout the year, while in the sandy one there was a clear shift from coastal prey to freshwater ones in S–S. The decrease of coastal prey consumption in S–S in the sandy sector coincided with the lowest MI values, showing that in this period otters use coastal areas less intensely. Though shifts in otter diet and use of space in the sandy sector are probably influenced by the population dynamics of estuarine fish species and crayfish, the increased tourist disturbance during spring and summer in the sandy sector could be an important determinant of the observed patterns. Finally, the results show that MI can be used as a reliable measure of habitat use by otters, at least in small areas.     

Spatial and temporal variability of deep-water algal assemblages in the Northwestern Mediterranean: The effects of an exceptional storm

There are deep-water populations of the endemic and threatened Mediterranean brown alga Cystoseira zosteroides in the Medes Islands Marine Reserve (NW Mediterranean). Here, the distribution, population structure, individual growth, mortality and recruitment rates of this species over two years are described in relation to the effects of an exceptional storm. We found a high spatial variability in the structure and dynamics of C. zosteroides populations at small geographical scales, suggesting that environmental factors acting at the population level display a key role in population size structure, mortality and recruitment. The elevated mortality rates recorded at some locations (almost 80%) is amongst the highest recorded for perennial algae as a consequence of a single storm, emphasizing the importance of episodic catastrophic events in the maintenance of these deep-water, slow-growing populations. These findings are of particular importance not only to fully understand the ecology of C. zosteroides, but also for its conservation.