Estuarine and coastal connectivity of an estuarine-dependent fishery species,Pomadasys commersonnii (Haemulidae)

Understanding the level of connectivity between estuarine and coastal waters is essential for appropriate management of estuarine-associated taxa. Most studies have focused on the role of a single estuary, while limited research exists on the importance of multiple estuaries to individuals of estuarine-associated species. This study used acoustic telemetry to assess the usage of multiple estuaries and coastal waters by the estuarine-dependent spotted grunter Pomadasys commersonnii. Twenty-six adult fish were tagged with acoustic transmitters in the Kariega and Bushmans estuaries, South Africa, and their movements along a 300-km stretch of Indian Ocean coastline were monitored for up to 17 months. Tagged individuals spent most of their time in the estuary where they were tagged (55% and 85% for fish tagged in the two estuaries, respectively), followed by time in the sea (30% and 15%) and in other estuaries (15% and <1%). The mean durations of sea trips for fish tagged in the Kariega Estuary or Bushmans Estuary, respectively, were 25 days (range 3–55) and 12 days (range 2–22). Of the fish that went to sea, 93% from the Kariega Estuary and 60% from the Bushmans Estuary visited other estuaries. Most visits were undertaken to the Swartkops, Bushmans and Kowie estuaries, although the longest durations were spent in the Sundays Estuary. Individuals moved to estuaries up to 130 km away. The total distance travelled between estuaries by an individual during the study was ～529 km, with means of 201 and 184 km, respectively, for fish tagged in the Kariega and Bushmans estuaries. Despite covering large distances between estuaries, individuals often returned to their tagging estuary. Residency in their tagging estuary, combined with frequent visits to a neighbouring estuary, highlights the importance of estuarine habitats for this popular fish species, even after reaching maturity.     

The impact of river flooding and high flow on the demersal fish assemblages of the freshwater-dominated Great Fish Estuary,South Africa

Freshwater inflow has a strong impact on the biological, chemical and physical characteristics of estuaries, which in turn affect the distribution and abundance of estuarine organisms. Increased climatic variability associated with climate change is predicated to modify precipitation patterns, which will likely intensify floods in estuaries. The demersal fish assemblage of the freshwater-dominated Great Fish Estuary, South Africa, was sampled using beam trawls, monthly, from December 2013 to November 2014. The first six months of the study were characterised by river flooding and high flow, with estuarine conditions found only in the mouth region; this was followed by six months of intermediate flow, with estuarine conditions recorded up to 10 km from the mouth. River flooding and subsequent reduced salinity resulted in a decrease in species richness and abundances of fishes in the estuary, with only two estuarine species (Glossogobius callidus and Psammogobius knysnaensis) and one marine migrant (Solea turbynei) recorded following river flooding (201 m³ s^?1), in January 2014. The greatest species richness and abundances among both marine and estuarine fishes were recorded during intermediate flow conditions. We conclude that although freshwater inflow into estuaries is important for the nursery function of these systems, flooding—especially in freshwater-dominated estuaries—may cause a temporary decline in the abundance of most marine and estuarine fish species, including important bentho-pelagic marine migrant fishery species, such as Argyrosomus japonicus and Pomadasys commersonnii.     

Comparisons between the characteristics of ichthyofaunas in nearshore waters of five estuaries with varying degrees of connectivity with the ocean

The characteristics of the fish faunas in nearshore, shallow (<1.2 m) waters of the basins of estuaries along the same coastline, but which were open to the ocean for varying periods, have been determined and compared. The fish faunas of the permanently-open Oyster Harbour, the seasonally-open Broke, Irwin and Wilson inlets and the normally-closed Wellstead Estuary on the south coast of Western Australia were sampled by seine net seasonally for 2 years. Irrespective of the frequency and duration that the estuary mouth was open, the ichthyofauna of each estuary was numerically dominated by three atherinid species and three gobiid species (92.9–99.7%), each of which completes its life cycle within these estuaries. The ichthyofaunal compositions of each estuary differed significantly, however, from that of each other estuary. These differences were largely attributable to the relative abundances of the above six species varying between estuaries, which, in turn, reflected differences in such factors as estuary mouth status, macrophyte cover and salinity. For example, Favonigobius lateralis and Leptatherina presbyteroides, which are also represented by marine populations, were most abundant in the permanently-open estuary (Oyster Harbour), which, in terms of substrate and salinity, most closely resembled the nearshore marine environment. In contrast, Leptatherina wallacei made its greatest contribution in the only estuary to exhibit a protracted period of greatly reduced salinities, which is consistent with its distribution in permanently-open estuaries on the lower west coast of Australia, while Atherinosoma elongata and Pseudogobius olorum were particularly numerous in estuaries containing dense stands of the seagrass Ruppia megacarpa. Marine species made the greatest contribution to species richness in the permanently-open estuary and least in the normally-closed estuary. Species richness was greatest in summer and least in winter in each estuary, but differed markedly between years only in Wilson Inlet. Density of fishes was greatest in the most eutrophic estuary (Wellstead Estuary) and least in the most oligotrophic estuary (Broke Inlet) and only underwent marked seasonal variations in Wilson Inlet and Wellstead Estuary, in which densities fell to their minima in winter. Ichthyofaunal composition varied between years in the Broke and Wilson inlets and Wellstead Estuary, in which there was little or no connection with the ocean in one of those years. Species composition underwent progressive seasonal changes throughout the year in Wellstead Estuary, due to the abundance of certain species peaking at different times of the year.     

Assessing food web dynamics and relative importance of organic matter sources for fish species in two Portuguese estuaries: a stable isotope approach

Stable carbon and nitrogen isotopes (δ13C, δ1?N) were used to analyse food web dynamics of two of the main estuaries of the Portuguese coast: Tejo and Mira. The ultimate sources of organic matter supporting production of some of the most abundant and commercially important fish species were determined; and seasonal, inter- and intra- estuarine differences in the trophic relations among producers and consumers were identified. Stable isotope analysis was performed in different producers, primary consumers (main prey items for fish) and fish species (Solea solea, Solea senegalensis, Pomatoschistus microps, Dicentrarchus labrax, Liza ramada, Diplodus vulgaris and Atherina presbyter) of two areas in each estuary, in July and October 2009. Model calculations showed that the main prey for the fish species in the Tejo estuary used mostly salt marsh-derived organic matter as nutritional sources, with no marked differences between the sampled months. Trophic levels of fish species from the same estuary differed at multiple scales: inter-species, seasonally and spatially (both between and within estuaries). Significant differences in isotopic composition of fish species were more pronounced spatially (between the two sampled areas in the estuary) than seasonally (between sampled months). Trophic relationships in both estuaries demonstrated that organic matter is transferred to higher trophic positions mainly through benthic pathways. This shows the flexibility of these species to share resources and to exploit temporary peaks in prey populations. The present results showed that extensive disturbance in intertidal habitats from both estuaries may potentially change the balance of organic matter in the base of these complex food webs.     

Influence of intermittent estuary outflow on coastal sediments of adjacent sandy beaches

Outflows from estuaries potentially contribute to the productivity of adjacent coastal waters, although most previous work has been on estuaries with considerable river discharge. We investigated the influence of estuary outflow on aspects of coastal sediments adjacent to two seasonally intermittent estuaries, the Curdies and Anglesea Rivers, in southwest Victoria, Australia. For each estuary, we measured sediment organic matter, microphytobenthic chlorophyll a and microbial utilization of carbon sources at three locations associated with each estuary: (1) inside estuary mouth, (2) estuary swash and (3) control swash (an open beach distant from any estuarine influences). Sampling occurred one week before and at one and nine weeks after both an artificial mouth opening and a separate natural flood at both estuaries. Significant temporal changes were detected for all three variables at the estuary mouth and estuary swash but the direction of change was inconsistent across the two estuaries and between the artificial mouth opening and natural flood. Organic matter in both estuaries showed no difference after the artificial mouth openings. Only Anglesea showed an increase in organic matter in the estuary mouth and estuary swash after the floods. Microphytobenthic chlorophyll a concentrations were highest when the estuary mouths were closed. Concentrations decreased at all locations at Curdies after the mouth was artificially opened. The estuary mouth at Anglesea sustained high chlorophyll concentrations and the estuary swash increased one week post artificial opening. The flood event resulted in an increase in chlorophyll a at the estuary mouth and swash at both estuaries, one week post flood. At Curdies, the microbial utilization of different carbon sources changed after both mouth events; estuary mouth and estuary swash showed similar patterns at one and nine weeks post opening. At Anglesea, the bacteria utilized different carbon sources between locations and the only significant interaction between location and time was post flood with change in carbon sources utilized by bacteria in the estuary mouth and estuary swash for one and nine weeks post flood. The southern coastline of Australia is characterized by estuaries with small catchments. This study highlights the spatial and temporal variability in the effects of the output of relatively small, intermittent estuaries on coastal sediment of adjacent beaches, particularly during prolonged periods of drought.     

Long-term stability of the fish assemblages in a warm-temperate South African estuary

Little is known about long-term changes in estuarine fish populations and related environmental variations. Fishes in the temporarily open/closed East Kleinemonde Estuary were sampled bi-annually, in summer and winter, using seine and gill nets between December 1994 and July 2005. A total of 18 families, represented by 33 species, were recorded. The 10 most abundant species caught were consistently recorded in catches each year, but CPUE of individual species varied on an annual basis and this can often be related to mouth state. Multivariate analyses of the annual marine fish community identified two distinct groups, with more species recorded during years that succeeded spring (September to November) mouth-opening events than in years following no mouth-opening events in spring. Interannual community stability (IMD) and seriation (IMS) also increased from the years following no opening events in spring to the years that succeeded spring opening events. These results highlight the importance of the timing of mouth opening to the marine fish community in a temporarily open/closed estuary. This study reinforces the importance of long-term studies to understanding community changes in estuaries caused by environmental variations over different time scales.     

Factors influencing the characteristics of the fish faunas in offshore,deeper waters of permanently-open,seasonally-open and normally-closed estuaries

This study explored the ways in which various factors influence the species compositions, species richness and catch rates of fishes in offshore, deeper waters of the basin and river regions of five estuaries, which are located along ca 400 km of the southern coastline of Western Australia and differ markedly in their physico-chemical characteristics. Gill netting seasonally for two years at sites in the basin and saline lower reaches of the main tributary of the seasonally-open Broke, Irwin and Wilson inlets, the permanently-open Oyster Harbour and the normally-closed Wellstead Estuary yielded 22,329 fishes representing 58 species. Overall, and irrespective of estuary type, the species compositions of the basins and rivers differed markedly. This was attributable to consistently greater abundances of Mugil cephalus, and usually also of Acanthopagrus butcheri, in the rivers of each estuary and to the restriction of a range of species largely to the basins. However, the compositions in the basins of the five estuaries varied markedly, reflecting differences in the extent and duration of the opening of the estuary mouth and/or whether extensive growths of macrophytes were present. Changes in the ichthyofaunal composition of the normally-closed Wellstead Estuary between the first and second years of the study were attributable, in particular, to the movement of two mugilid species into offshore waters as they increased in size. Cyclical changes in ichthyofaunal composition were conspicuous in both regions of the estuary that underwent the most pronounced seasonal variations in environmental conditions. In each estuary, species richness was greater in the basin than river, where salinities were more variable and fell to lower levels and were thus less conducive to the immigration of most marine species. Catch rates were least in Broke Inlet, which had the lowest primary productivity, and were particularly high in Wellstead Estuary, which is highly eutrophic. The results of this study emphasise that ichthyofaunal composition can vary greatly with region (basin vs river) in microtidal estuaries, a finding that is of direct relevance to managers as these systems are becoming increasingly degraded and yet still constitute important nursery areas for certain fish species and often support recreational and commercial fisheries.     

The Larval Fish Assemblage in Nearshore Coastal Waters off the St Lucia Estuary, South Africa

This paper reports on the composition, abundance and distribution of the larval fish assemblage in the nearshore coastal waters off the St Lucia Estuary mouth, South Africa. Ichthyoplankton samples were collected over a 12 month period from five stations located along a transect up to 2·5 km offshore, and from two stations north and south of the estuary mouth, respectively. In all, 6126 fish larvae, representing 89 families and 186 species, were collected. Larvae in the families Myctophidae and Tripterygiidae comprised 21% and 16% of the total catch, respectively. The most abundant species were an unidentified triplefin, Tripterygiid 1 and the lanternfish Benthosema fibulatum, together which contributed nearly 18% of the total catch. Larvae of marine spawners independent of estuaries dominated the catch both in terms of density (90%) and in terms of number of taxa (89%). Some larvae of estuarine-associated species were present, in addition to a few specimens of estuarine resident species. Overall the dominant environmental variable affecting larval densities was temperature, particularly for Trypterygiid 1 where temperature contributed to 9% of the variance model. Densities of fish larvae peaked in November and December 1990 (late spring and early summer) and were lowest from January to June 1991 (summer, autumn an early winter). Different taxa dominated the catch each month with reef- and shelf-associated species accounting for the peak in August and September 1990, oceanic species in November 1990 and a mixture of the two groups in December. Overall larval densities were significantly higher in bottom samples with a trend of increasing densities offshore for reef and shelf taxa. The larvae of reef and shore taxa were predominantly preflexion larvae, whilst the few estuarine spawner species that were collected were mainly postflexion. Ontogenetic patterns related to depth and distance offshore were evident for the dominant species in each estuarine-association category.The present study has shown that temporal and spatial variations in the larval fish assemblage off St Lucia are related to environmental conditions and ontogenetic behavioural patterns of certain species. The origin of many of the larvae in the assemblages off the coast of St Lucia is probably from both local spawning populations in the shelf waters off KwaZulu-Natal and spawning populations farther north in shelf waters off Mozambique. Additional studies with more detailed oceanographic measurements will further our understanding of the physical processes that supply larvae to the St Lucia region.     

Environmental control on early life stages of flatfishes in the Lima Estuary (NW Portugal)

Several flatfishes spawn in oceanic waters and pelagic larvae are transported inshore to settle in the nursery areas, usually estuaries, where they remain during their juvenile life. Nursery areas appear as extremely important habitats, not only for juveniles but also for the earlier planktonic larval fish. Yet, the majority of nursery studies tend to focus only on one development stage, missing an integrative approach of the entire early life that fishes spent within a nursery ground. Thus, the present study assessed the influence of environmental parameters on the dynamics of the larval and juvenile flatfishes, throughout their nursery life in the Lima Estuary. Between April 2002 and April 2004, fortnightly subsurface ichthyoplankton samples were collected and juveniles were collected from October 2003 until September 2005. Larval assemblages comprised nine flatfish species, while only six were observed among the juvenile assemblages. Solea senegalensis and Platichthys flesus were the most abundant species of both fractions of the Lima Estuary flatfishes. Larval flatfish assemblages varied seasonally, without relevant differences between lower and middle estuary. Platichthys flesus dominated the spring samples and summer and autumn periods were characterized by an increase of overall abundance and diversity of larval flatfishes, mainly S. senegalensis, associated with temperature increase and reduced river flow. On the contrary, during the winter abundance sharply decreased, as a consequence of higher river run-off that might compromised the immigration of incompetent marine larvae. Juvenile flatfishes were more abundant in the middle and upper areas of the estuary, but the species richness was higher near the river mouth. Sediment type, distance from the river mouth, salinity, temperature and dissolved oxygen were identified as the main environmental factors structuring the juvenile flatfish assemblages. Juveniles were spatially discrete, with the most abundant species S. senegalensis and P. flesus associated with the middle and upper estuary, while the remaining species were associated with the lower estuarine areas. The larval fraction exhibited distinct dynamics from the juvenile estuarine flatfish community. Larval flatfishes showed a strong seasonal structure mainly regulated by biological features as the spawning season and also by seasonal variations of water characteristics. On the other hand, juvenile flatfishes were markedly controlled by site specific characteristics such as sediments structure, distance from the river mouth and salinity regime. The present study emphasized the idea that the environmental control varies throughout the ontogenetic development, stressing the importance of integrating all the early life of a species in flatfish nursery studies.     

The characteristics of the nematode faunas in subtidal sediments of a large microtidal estuary and nearshore coastal waters differ markedly

The present study examines traditional paradigms regarding the differences between faunas in estuaries vs coastal waters. The ecological characteristics of the free-living nematode faunas of nearshore, subtidal sediments in downstream and upstream areas of the large, microtidal Swan River Estuary are compared with those similarly recorded seasonally in subtidal sediments along an adjacent part of the coast of temperate south-western Australia. Overall, the nematode species richness recorded in the upstream (38) and downstream estuarine areas (58) and from throughout the estuary (61) were substantially less than in marine waters (75). In addition, the value for Simpson’s diversity index was marginally less in the estuary and the dominance of the most abundant species greater. In contrast, the mean nematode species richness and diversity in individual cores followed the reverse trend, reflecting a combination of less variability among the species compositions and far greater densities in the cores from estuarine sediments. Furthermore, the mean density (numbers 10 cm⁻²) was far higher in both upstream (341) and downstream (903) areas of the estuary than in marine waters (87). Although the compositions of the assemblages in upstream and downstream estuarine areas differed markedly from each other at the species, genus and family levels, these differences were less pronounced than those between either of these areas and marine waters. The trophic compositions at the moderately sheltered and fully exposed marine sites differed from that in both areas of the estuary, whereas that at the most sheltered marine site was similar to that in the downstream estuarine area, with both containing substantial proportions of epistrate-grazing species. The variations among the species richness, diversity, densities and taxonomic and trophic compositions of nematode assemblages in the sediments of the two estuarine areas and nearby marine waters appear to reflect differences in 1) salinity regimes, 2) extents of exposure to wave action and its related effects and 3) amounts and types of food available to nematodes.     

Intertidal macroalgae and macroinvertebrates: Seasonal and spatial abundance patterns along an estuarine gradient

Quantitative sampling of the dominant intertidal epibiota was conducted seasonally along an estuarine gradient within the Great Bay Estuary System, New Hampshire, U.S.A. The abundance and zonation of the dominant macroorganisms varied with distance into the estuary. Replacement of marine by estuarine species occurred, and overall abundance and species richness decreased along the estuarine gradient. Zonation patterns within the inner estuary were primarily allied with substrata. Maximum abundance of invertebrates occurred in the mid-intertidal zone where a dense fucoid canopy provided habitat heterogeneity. Densities of epibiotic organisms decreased toward low water, especially in the inner estuary where hard substratum was limiting. Settlement blocks, introduced into the low intertidal zone, were dominated by barnacles and fucoid algae; after 16 months, the species composition on the settlement blocks resembled the adjacent community. Semibalanus balanoides settled in the spring, while Fucus vesiculosus var. spiralis exhibited low but constant settlement. Despite the physical rigors of the estuarine environment, only Semibalanus balanoides, Ilyanassa obsoleta and Spartina alterniflora showed significant seasonal changes in density. Thus, there are predictable and persistent epibiotic species assemblages within the intertidal zone of the Great Bay Estuary System.     

The influence of an extreme drought event in the fish community of a southern Europe temperate estuary

Between 2003 and 2006, a severe drought occurred throughout the Mondego River catchment's area, inducing lower freshwater flows into the estuary. As a consequence, both 2004 and 2005 were considered as extreme drought events. From June 2003 to June 2006, the fish assemblage of the Mondego Estuary was sampled monthly in five stations during the night, using a 2 m beam trawl. Fish abundance was standardized as the number of individuals per 1000 m² per season and the assemblage was analyzed based on ecological guilds: estuarine residents, marine juveniles, marine adventitious, freshwater, catadromous and marine species that use the estuary as a nursery area. A total of 42 species belonging to 23 families were identified, with estuarine residents and nursery species dominating the fish community. Variations in the fish community were assessed using non-metric MDS, being defined as three distinct periods: summer and autumn 2003, 2004/2005 and winter and summer 2006. The main drought-induced effects detected were the depletion of freshwater species and an increase in marine adventitious in 2004/2005, due to an extended intrusion of seawater inside the estuary and a significant reduction in abundance during the driest period of estuarine resident species. Nevertheless, from the management point of view, it could be stated that although some variations occurred due to environmental stress, the main core of the Mondego Estuary fish community remained relatively unchanged.     

The divergent environmental characteristics of permanently-open,seasonally-open and normally-closed estuaries of south-western Australia

This study has compared the environmental characteristics of the basins and saline lower reaches of the tributaries of eight estuaries on the south coast of Western Australia, which differ in their degree of connectivity with the ocean. Although four estuaries between 115.1° and 121.8° E along that coast remain permanently open to the ocean, the others only become open when the volume of river discharge is sufficient to breach the prominent sand bars at their mouths, which occurs annually following heavy winter and early spring rainfall in some estuaries (seasonally open) and infrequently in others (normally closed). Estuaries to the west of 118.5° E are predominantly permanently open, e.g. Oyster Harbour, or seasonally open, e.g. Broke, Irwin and Wilson inlets, whereas those further east, e.g. Wellstead Estuary and Hamersley, Culham and Stokes inlets, where annual rainfall and thus discharge are much lower, only become open after exceptionally heavy discharge. In permanently and seasonally-open estuaries, pronounced haloclines and oxyclines are present in the narrow rivers but not the wide basins where the waters are subjected to wind-driven mixing. The extent of cyclical seasonal fluctuations in environmental conditions differed markedly among the three seasonally-open estuaries and between years in one of those systems. These differences reflected variations in the relationship between the volume of fluvial discharge, which is determined by a combination of the amount of local rainfall, catchment size and extent of clearing of native vegetation, and the amount of intrusion by marine waters, which is largely controlled by the size and duration of the opening of the estuary mouth. The mean seasonal salinities in the basins of the three normally-closed estuaries increased over three years of very low rainfall to 64 in the deepest of these estuaries (Stokes Inlet) to 145 in Hamersley Inlet and to 296 in the shallowest estuary (Culham Inlet). These results demonstrate that the environmental characteristics of estuaries on the south coast of Western Australia differ markedly, even among those of the same type, e.g. seasonally-open estuaries or normally-closed estuaries.     

Inter- and intra-estuarine fish assemblage variability patterns along the Portuguese coast

Estuaries along the Portuguese coast differ considerably in terms of their structure, geomorphologic and hydrologic characteristics. They play an important ecological role for different fish species, namely acting as important nursery areas. The fish assemblages of nine estuaries of the Portuguese coast were investigated in order to evaluate their main inter- and intra-estuarine variability patterns. Fish sampling surveys were conducted in May and July 2006, covering the full estuarine gradient. The different saline areas in each estuary were mapped using a Geographic Information System and fish assemblages’ were described and compared using a functional guilds approach. Generalized linear models were used to relate fish species richness to geomorphologic, hydrologic and environmental characteristics of the estuaries considered and correspondence analyses were performed to evaluate similarities in fish assemblages’ structure. At a large scale, river flow was the most important factor explaining the variability in species richness in estuaries along the Portuguese coast. At a regional scale, different abiotic factors explained the occurrence and abundance of fish species in the estuaries. Nonetheless, the overall role of the estuary was strongly related with the dominant saline zone within each estuary.     

Species composition, distribution, and invertebrate prey of fish assemblages in the Columbia River Estuary

The fish community of the Columbia River Estuary was sampled with trawl, beach seine, and purse seine over an 18 month period during 1980–1981. Seasonality of abundance and species richness in the estuary reflect the timing of migrations and the reproductive cycles of marine and anadromous species. Composition of the fish community and dominant species in the Columbia River estuary are similar to many smaller estuaries in the Pacific Northwest. These similarities reflect the influence of the nearshore marine environment on fish community structure throughout the West Coast as well as the wide geographic distribution and considerable physiological tolerance of many dominant euryhaline species. The distribution of fish assemblages within the Columbia River estuary is influenced by large seasonal variation in river discharge and salinity. Within large areas or salinity zones, species assemblages use different habitats and invertebrate prey. The distribution of abundance and the stomach fullness of fishes vary directly with the density of potential prey. We hypothesize that fish production may be limited by dynamic physical processes that control prey availability or the feeding efficiencies of predators in the highly turbid estuary.     

Introduced Pacific oysters Crassostrea gigas in South Africa: demographic change,genetic diversity and body condition

Successful aquaculture species are often chosen for their fast growth rates and fecundity, which are also characteristics of invasive species. The Pacific oyster Crassostrea gigas, which constitutes 80% of global oyster trade, has been confirmed as invasive in 17 of the 66 countries where it is cultured. The single study of its status in South Africa reported populations in six South Coast estuaries in 2001, dropping to three sites in 2003. We resurveyed these estuaries, visited others in the Eastern and Western Cape provinces, and sampled oyster tissue for molecular analyses of population structure. Pacific oysters have disappeared from Knysna and, following our collections, possibly also from the GouKou Estuary. Between 2003 and 2012, the Breede Estuary population decreased by 87%, from an estimated 184 206 to 23 760 individuals. Within this estuary, oysters 12 km upriver had denser shells and higher body condition indices than did those within 1.4 km of the river mouth, presumably reflecting higher availability of suspended organic matter. However, low salinity over most of the species’ range in the estuary probably inhibits recruitment. New populations of Pacific oysters in the Swartkops and Kaaimans estuaries urgently require monitoring and eradication. Haplotype (h) and nucleotide (π) diversities across all oyster populations sampled (h = 0.2300 [SD 0.0595], π = 0.0006 [SD 0.0007]) were lower than those of co-occurring indigenous Cape rock oysters Striostrea margaritacea from the GouKou and Breede estuaries (h = 0.9076 [SD 0.0386], π = 0.00589 [SD 0.00347]). Pacific oysters either have been introduced to South African estuaries infrequently, or have experienced genetic bottlenecks following river floods or human exploitation, or both. Populations growing outside culture infrastructure are restricted to estuaries in the Eastern and Western Cape provinces, with no evidence of occurrence in fully marine shelf environments. Given the species’ considerable socio-economic importance, estuarine and coastal surveillance coupled with aquaculture zoning are required to integrate biodiversity and food security considerations.     

Nursery use patterns of commercially important marine fish species in estuarine systems along the Portuguese coast

Analysing the estuarine use patterns of juveniles of marine migrant fish species is vital for identifying important sites for juveniles as well as the basic environmental features that characterize these sites for different species. This is a key aspect towards understanding nursery function. Various estuarine systems along the Portuguese coast (Minho, Douro, Ria de Aveiro, Mondego, Tejo, Sado, Mira, Ria Formosa and Guadiana) were sampled during Spring and Summer 2005 and 2006. Juveniles of commercially important marine fish species Solea solea, Solea senegalensis, Platichthys flesus, Diplodus vulgaris and Dicentrarchus labrax, predominantly 0-group individuals, were amongst the most abundant species and had distinct patterns of estuarine use as well as conspicuous associations with several environmental features. Juvenile occurrence and density varied amongst estuaries and sites within them, and differed with species. Sites with consistently high juvenile densities were identified as important juvenile sites (i.e. putative nursery grounds). Through generalized linear models (GLM), intra-estuarine variation in occurrence and density of each of the individual species was largely explained by environmental variables (temperature; salinity; depth; percentage of mud in the sediment; presence of seagrass; importance of intertidal areas; relative distance to estuary mouth; macrozoobenthos densities; and latitude). Decisive environmental factors defining important sites for juveniles varied depending on the system as a result of different environmental gradients, though there were common dominant features for each species regardless of the estuary considered. Analysed environmental variables in the GLM also accounted for inter-estuarine variation in species' occurrence and density. In several estuaries, the identified important juvenile sites were used by many of these species simultaneously and may be of increased value to both management and conservation. Overall, the variability in site features amongst estuaries highlighted the tolerance of these species to different available environmental conditions and provided fundamental information for future spatially explicit modelling of their distribution. This should ultimately enable the prediction of species response to habitat alterations.     

Spatial variability of nitrogen isotope ratios of particulate material from Northwest Atlantic continental shelf waters

Human encroachment on the coastal zone has led to concern about the impact of anthropogenic nitrogen (N) on estuarine and continental shelf waters. Western North Atlantic watershed budgets suggest that the export of human-derived N from estuaries to shelf waters off the east coast of the US may be significant; however, models based on water inputs and estimates of upwelling of deepwater nutrients to surface waters of the mid-Atlantic bight indicate that estuarine N may be a relatively minor component of the overall shelf N budget. Stable N isotope ratios could provide a means to assess the relative input of anthropogenic N to shelf waters, particularly since dissolved N from human sources has elevated δ¹⁵N values (range: 7–30‰). We collected particulate material from surface shelf waters off the US east coast from 2000 to 2005 at near-shore sample sites proximal to the mouth of six estuaries and corresponding sites farther offshore. Near-shore (mean 33.7 km from estuary mouth) δ¹⁵N values ranged from 5.5 to 7.7‰ Offshore values (mean 92.4 km from estuary mouth) were consistently lower than near-shore sites (average 4.7 ± 1.0‰ versus 6.8 ± 1.1‰), suggesting different N sources to near and offshore stations. Near-shore regions are often more productive, as mean monthly chlorophyll-a concentrations from the sea-viewing wide field-of-view sensor (SeaWiFS) were significantly higher at near-shore sites near the mouth of three of the six estuaries. A mass balance using a concentration-dependent mixing model with chlorophyll-a concentrations as a surrogate for dissolved inorganic nitrogen can account for all of the nitrogen at near-shore sites south of Cape Cod with estuarine nitrogen estimated to contribute 45–85% of the nitrogen to the near-shore surface particulate material. Our results support the hypothesis that estuarine nitrogen is influencing continental shelf ecosystems, and also provide preliminary evidence of the spatial extent of its influence on shelf waters in the mid-Atlantic bight.     

Temperature and salinity as primary determinants influencing the biogeography of fishes in South African estuaries

Relationships between key fish taxa and various abiotic factors in South African estuaries have been examined. Of the physico-chemical parameters recorded, temperature and salinity appeared to be the main factors affecting the distribution and occurrence of estuarine fishes. Tropical estuarine-associated species appear to prefer warm, turbid, brackish water conditions with many species being largely restricted to subtropical estuaries. The decline in sea temperatures as well as upwelling events limits the dispersal of tropical species into warm-temperate estuaries. Some eurythermal tropical species, however, do extend into warm-temperate estuaries. Warm-temperate estuaries are characterised by cool, more saline waters with low turbidity and are dominated by endemic taxa. Some warm-water endemic species are common in both warm-temperate and subtropical estuaries but are generally not a major component of the fish community of cool-temperate estuaries. Other endemic species appear to prefer cooler waters and occur in both warm- and cool-temperate estuaries but are uncommon in subtropical systems. Temperate species also occur in warm-temperate systems but are generally absent from subtropical estuaries. Widespread or cosmopolitan species occur in all biogeographic regions.     

Comparison of,and the effects of altered freshwater inflow on,fish assemblages of two contrasting South African estuaries: the cool-temperate Olifants and the warm-temperate Breede

This study compares the fish assemblages of the permanently open cool-temperate Olifants and warm-temperate Breede estuaries on the west and south coasts of South Africa respectively, and their responses to altered freshwater flows. Both estuaries have experienced a >35% reduction in mean annual runoff (MAR) from a historical reference condition to the present day with a >60% reduction possible under future flow scenarios. With the exception of species that have both marine and estuarine breeding populations, the Olifants Estuary fish assemblage has experienced an overall 20% decrease in abundance from reference (pristine state) to the present day and will gradually decline to 55% of reference with a predicted future 60% reduction in MAR. Consequently, future reductions in flow are likely to result in the Olifants Estuary progressing towards a low biomass, low diversity, marine-dominated system. In contrast, reduced freshwater flows in the Breede Estuary are likely to experience an overall reduction in the abundance of species that breed only in estuaries, and in freshwater and catadromous species. Collectively, entirely estuarine-dependent fish will increase in abundance, but considered individually some important exploited species such as Argyrosomus japonicus and Pomadasys commersonnii will collapse to 50% of historical numbers once there has been a 64% reduction in MAR. Overall, fish abundance in the estuary has increased by 6% from reference to the present day and is likely to increase to 115% of reference with future reductions in flow. Some species with a preference for fresh and brackish water will be all but lost from the system, but overall diversity is likely to increase with the range expansion of warm-temperate and subtropical marine species westward. In all, the fish assemblage of the Breede Estuary will experience a gradual change from a relatively high-diversity, low-abundance, freshwater rich system under historical flow conditions to a high diversity, high-abundance, marine-dominated system with future reductions in flow.