Projected Reorganization of Florida Bay Seagrass Communities in Response to the Increased Freshwater Inflow of Everglades Restoration

Historic changes in water-use management in the Florida Everglades have caused the quantity of freshwater inflow to Florida Bay to decline by approximately 60% while altering its timing and spatial distribution. Two consequences have been (1) increased salinity throughout the bay, including occurrences of hypersalinity, coupled with a decrease in salinity variability, and (2) change in benthic habitat structure. Restoration goals have been proposed to return the salinity climates (salinity and its variability) of Florida Bay to more estuarine conditions through changes in upstream water management, thereby returning seagrass species cover to a more historic state. To assess the potential for meeting those goals, we used two modeling approaches and long-term monitoring data. First, we applied the hydrological mass balance model FATHOM to predict salinity climate changes in sub-basins throughout the bay in response to a broad range of freshwater inflow from the Everglades. Second, because seagrass species exhibit different sensitivities to salinity climates, we used the FATHOM-modeled salinity climates as input to a statistical discriminant function model that associates eight seagrass community types with water quality variables including salinity, salinity variability, total organic carbon, total phosphorus, nitrate, and ammonium, as well as sediment depth and light reaching the benthos. Salinity climates in the western sub-basins bordering the Gulf of Mexico were insensitive to even the largest (5-fold) modeled increases in freshwater inflow. However, the north, northeastern, and eastern sub-basins were highly sensitive to freshwater inflow and responded to comparatively small increases with decreased salinity and increased salinity variability. The discriminant function model predicted increased occurrences of Halodule wrightii communities and decreased occurrences of Thalassia testudinum communities in response to the more estuarine salinity climates. The shift in community composition represents a return to the historically observed state and suggests that restoration goals for Florida Bay can be achieved through restoration of freshwater inflow from the Everglades.     

Distribution and Pathogenicity of the Protist <Emphasis Type="Italic">Labyrinthula</Emphasis> sp. in western Mediterranean Seagrass Meadows

The presence of the pathogenic protist Labyrinthula sp., the causative agent of seagrass wasting disease and mass mortality events, was assessed in 18 seagrass meadows in the Balearic region (western Mediterranean). This protist was found in 70% of seagrass meadows investigated and in all seagrass species present in the region (i.e., Posidonia oceanica, Cymodocea nodosa, and Zostera noltii). Labyrinthula spp. cultures isolated from seven P. oceanica and one Thalassia testudinum meadows were used as inocula to perform cross-infection experiments in order to test seagrass vulnerability to Labyrinthula spp. infection. These isolates produced lesions on P. oceanica and other seagrass species (Zostera marina, Z. noltii, and C. nodosa). P. oceanica and Z. noltii, both species autochthonous to the Mediterranean Sea, were the seagrasses most vulnerable to infection by the tested isolates. One of the P. oceanica isolates of Labyrinthula sp. also infected the Atlantic seagrass Z. marina, and all of the Mediterranean seagrasses were infected by Labyrinthula sp. isolated from the T. testudinum, native to the Caribbean and Gulf of Mexico. This work confirms that Labyrinthula sp. is commonly found on seagrasses of the Mediterranean Sea and demonstrates that Labyrinthula sp. can infect seagrasses in different genera, in contrast to previous studies where Labyrinthula sp. was considered to be genus-specific. This finding points out the broadly pathogenic nature of some Labyrinthula sp. isolates. Finally, this work identifies Labyrinthula sp. as a possible detrimental agent for P. oceanica.     

Decadal changes in seagrass distribution and abundance in Florida Bay

The Florida Bay ecosystem has changed substantially in the past decade, and alterations in the seagrass communities have been particularly conspicuous. In 1987 large areas ofThalassia testudinum (turtlegrass) began dying rapidly in western Florida Bay. Although the rate has slowed considerably, die-off continues in many parts of the bay. Since 1991, seagrasses in Florida Bay have been subjected to decreased light availability due to widespread, persistent microalgal blooms and resuspended sediments. In light of these recent impacts, we determined the current status of Florida Bay seagrass communities. During the summer of 1994, seagrass species composition, shoot density, shoot morphometrics, and standing crop were measured at 107 stations. Seagrasses had been quantified at these same stations 10 yr earlier by Zieman et al. (1989).T. testudinum was the most widespread and abundant seagrass species in Florida Bay in both 1984 and 1994, and turtlegrass distribution changed little over the decade. On a baywide basis,T. testudinum density and biomass declined significantly between surveys; mean short-shoot density ofT. testudinum dropped by 22% and standing crop by 28% over the decade.T. testudinum decline was not homogeneous throughout Florida Bay; largest reductions in shoot density and biomass were located principally in the central and western bay. Percent loss ofT. testudinum standing crop in western Florida Bay in 1994 was considerably greater at the stations with the highest levels of standing crop in 1984 (126–215 g dry wt m⁻²) than at the stations with lower levels of biomass. While turtlegrass distribution remained consistent over time, both the distribution and abundance of two other seagrasses,Halodule wrightii andSyringodium filiforme, declined substantially between 1984 and 1994. Baywide,H. wrightii shoot density and standing crop declined by 92%, andS. filiforme density and standing crop declined by 93% and 88%, respectively, between surveys. Patterns of seagrass loss in Florida Bay between 1984 and 1994 suggest die-off and chronic light reductions were the most likely causes for decline. If die-off and persistent water-column turbidity continue in Florida Bay, the long-term future of seagrasses in the bay is uncertain.     

Spatial differences in macroinvertebrate communities in intertidal seagrass habitats and unvegetated sediment in three New Zealand estuaries

This study investigated macroinvertebrate community composition in seagrass beds at a range of spatial scales, with an emphasis on the transition between vegetated and unvegetated sediment. At four intertidal sites in three New Zealand estuaries (Whangamata, Wharekawa, and Whangapoua Harbours), a large continuous bed of seagrass (Zostera capricorni) was selected with adjacent unvegetated sediment. Macroinvertebrate community composition and biomass, as well as sediment characteristics, were determined at sampling locations 1 and 50 m inside seagrass beds, and 1, 10, and 50 m outside seagrass beds. Analysis of univariate measures of community composition (total abundance, number of species, and diversity) and total biomass indicated significant differences among sites and sampling locations, but contrary to many previous studies these measures were not higher inside than outside the seagrass beds. Multivariate analysis indicated that sites with high seagrass biomass supported a similar community composition. The remaining sampling locations were clustered by site, but there were also significant differences in community composition among sampling locations within a site. There were distinctive communities at the edge of seagrass beds at sites with high seagrass biomass, and evidence that the effects of seagrass beds may extend into the unvegetated sediment. At the low seagrass biomass site there was no evidence of any edge effects, although community composition differed inside and outside the bed. Differences in community composition were driven primarily by small changes in the relative abundance of the dominant taxa. At high seagrass biomass sites the absence of deep-burrowing polychaetes and low numbers of bivalves suggests that one possible mechanism underlying the observed variation in community composition was inhibition by the dense root-rhizome mat. The results of this study emphasize the need to consider the linkages between habitats in heterogeneous estuarine landscapes and how those linkages vary among sites, if the structure and functioning of macroinvertebrate communities in seagrass habitats are to be understood.     

Recruitment of Estuarine-Dependent Nekton Through a New Tidal Inlet: the Opening of Packery Channel in Corpus Christi,TX, USA

The US Army Corps of Engineers recently dredged and permanently reopened Packery Channel, historically a natural tidal inlet, to allow water exchange between the Gulf of Mexico and the Laguna Madre, TX, USA. The main objective of this study was to characterize estuarine-dependent recruitment and community structure in seagrass habitats adjacent to Packery Channel pre- and post-channel opening. We sampled fish and crustacean abundance using an epibenthic sled in Halodule wrightii seagrass meadows in both control and impact locations over 2 years, 1 year before the opening of Packery Channel (October 2004–May 2005) and 1 year after (July 2005–April 2006). Using the before–after control–impact design, we found significantly fewer nekton post-channel opening. However, we found significantly higher mean densities of newly settled estuarine-dependent species (Sciaenops ocellatus, Micropogonias undulatus, Lagodon rhomboides, Callinectes sapidus, and penaeid shrimp) post-opening. Multivariate analyses showed significant community assemblage changes post-opening with increased contribution of estuarine-dependent species post-opening. Our results show that estuarine-dependent nekton are using Packery Channel as a means of ingress into areas of the upper Laguna Madre’s seagrass meadows that were previously inaccessible, which may lead to higher fisheries productivity for some of these economically and ecologically important fishery species.     

Seasonal and long-term trends in the water quality of Florida Bay (1989–1997)

Analysis of 6 yr of monthly water quality data was performed on three distinct zones of Florida Bay: the eastern bay, central bay, and western bay. Each zone was analyzed for trends at intra-annual (seasonal), interannual (oscillation), and long-term (monotonic) scales. the variables TON, TOC, temperature, and TN∶TP ratio had seasonal maxima in the summer rainy season; APA and Chla, indicators of the size and activity of the microplankton tended to have maxima in the fall. In contrast, NO₃ ⁻, NO₂ ⁻, NH₄ ⁺, turbidity, and DO_sat, were highest in the winter dry season. There were large changes in some of the water quality variables of Florida Bay over the study period. Salinity and TP concentrations declined baywide while turbidity increased dramatically. Salinity declined in the eastern, central, and western Florida Bay by 13.6‰, 11.6‰, and 5.6‰, respectively. Some of the decrease in the eastern bay could be accounted for by increased freshwater flows from the Everglades. In contrast to most other estuarine systems, increased runoff may have been partially responsible for the decrease in TP concentrations as input concentrations were 0.3–0.5 μM. Turbidity in the eastern bay increased twofold from 1991 to 1996, while in the central and western bays it increased by factors of 20 and 4, respectively. Chla concentrations were particularly dynamic and spatially heterogeneous. In the eastern bay, which makes up roughly half of the surface area of Florida Bay, Chla declined by 0.9 μg l⁻¹ (63%). The hydrographically isolated central bay zone underwent a fivefold increase in phytoplankton biomass from 1989 to 1994, then rapidly declined to previous levels by 1996. In western Florida Bay there was a significant increase in Chla, yet median concentrations of Chla in the water column remained modest (∼2 μg l⁻¹) by most estuarine standards. Only in the central bay did the DIN pool increase substantially (threefold to sixfold). Notably, these changes in turbidity and phytoplankton biomass occurred after the poorly-understood seagrass die-off in 1987. It is likely the death and decomposition of large amounts of seagrass biomass can at least partially explain some of the changes in water quality of Florida Bay, but the connections are temporally disjoint and the process indirect and not well understood.     

Lucinid clam influence on the biogeochemistry of the seagrass<Emphasis Type="Italic">Thalassia testudinum</Emphasis> sediments

Lucinid bivalves dominate the infauna of tropical seagrass sediments. While the effect of seagrass on lucinids has been studied, the reverse effect has largely been ignored. Lucinids can alter porewater chemistry (i.e., increase porewater nutrients by suspension feeding and decrease porewater sulfides by oxygen introduction and bacterial oxidation), which can potentially change seagrass productivity and growth morphology. To observe correlations between porewater chemistry and lucinid presence, a field survey and laboratory microcosm experiment were conducted. Survey sampling sites with lucinids had significantly lower sulfide and higher ammonium concentrations than sampling sites without lucinids. There was no difference in phosphate concentration among sampling sites. Both lucinid species used in the microcosm experiment (Ctena orbiculata andLucinesca nassula) significantly lowered sulfide concentrations in the sediment porewater. Microcosm and field survey results were incorporated into a sulfide budget. In seagrass sediments, lucinids remove 2–16% of the total sulfide produced. Sulfide is a major stressor to both plants and animals in Florida Bay sediments; this removal may be important to maintaining seagrass productivity and health. Oxygen introduction into sediments byC. orbiculata was estimated in a dye experiment.C. orbiculata were added to small tubes containing sieved mud and incubated in a bath of seawater with a Rhodamine WT. Rhodamine WT accumulation in the sediment was measured. A first order estimate showed that oxygen introduction can account for less than 5% ofC. orbiculata sulfide removal.     

Recolonization dynamics in a mixed seagrass meadow: The role of clonal versus sexual processes

Recolonization dynamics from disturbance on a Philippine mixed seagrass meadow, containing species spanning more than 10-fold in rhizome elongation rates and reproductive effort, was examined by following the recovery of a 1,200 m² gap over 2.5 yr. The objective was to assess the contribution of contrasting species to the recovery process and to evaluate the importance of sexual versus vegetative colonization. Large, slow-growing species,Thalassia hemprichii andEnhalus acoroides, that produce large, broadly-dispersed seeds dominated sexual colonization with a total of 2,643 and 210 seedlings, respectively, recruiting to the area. Despite very rapid turnover of sexual recruits, the high frequency of seedling establishment ensured successful development of new patches in areas devoid of vegetation, leading to a scattered and evenly distributed presence of vegetation inside the gap. The small seagrass speciesCymodocea rotundata andHalodule uninervis, characterized by fast rhizome elongation rates but low reproductive output and limited seed dispersal, were the major contributors to the overall 450 m² increase in vegetation cover through fast lateral extension (144±6 cm yr⁻¹) from meadow edge and surviving patches, forming a compact vegetation cover in one edge of the denuded area. We conclude that contrasting recruitment strategies in the mixed-species seagrass community examined have implications for colonization potential at different spatial scales. Fast clonal growth is only an efficient mechanism for colonization of disturbances within established meadows (small gaps), whereas the large species, which combined high reproductive output with high seed dispersal capacity, may act to accelerate the colonization process in large gaps or distant from established meadows.     

Variations in water clarity and bottom albedo in Florida Bay from 1985 to 1997

Following extensive seagrass die-offs of the late 1980s and early 1990s, Florida Bay reportedly had significant declines in water clarity due to turbidity and algal blooms. Scant information exists on the extent of the decline, as this bay was not investigated for water quality concerns before the die-offs and limited areas were sampled after the primary die-off. We use imagery from the Advanced Very High Resolution Radiometer (AVHRR) to examine water clarity in Florida Bay for the period 1985 to 1997. The AVHRR provides data on nominal water reflectance and estimated light attenuation, which are used here to describe turbidity conditions in the bay on a seasonal basis. In situ observations on changes in seagrass abundance within the bay, combined with the satellite data, provide additional insights into losses of seagrass. The imagery shows an extensive region to the west of Florida Bay having increased reflectance and light attenuation in both winter and summer begining in winter of 1988. These increases are consistent with a change from dense seagrass to sparse or negligible cover. Approximately 200 km² of these offshore seagrasses may have been lost during the primary die-off (1988 through 1991), significantly more than in the bay. The imagery shows the distribution and timing of increased turbidity that followed the die-offs in the northwestern regions of the bay, exemplified in Rankin Lake and Johnson Key Basin, and indicates that about 200 km² of dense seagrass may have been lost or severely degraded within the bay from the start of the die-off. The decline in water clarity has continued in the northwestern bay since 1991. The area west of the Everglades National Park boundaries has shown decreases in both winter turbidity and summer reflectances, suggestive of partial seagrass recovery. Areas of low reflectance associated with a majorSyringodium filiforme seagrass meadow north of Marathon (Vaca Key, in the Florida Keys) appear to have expanded westward toward Big Pine Key, indicating changes in the bottom cover from before the die-off. The southern and eastern sections of the Bay have not shown significant changes in water clarity or bottom albedo throughout the entire time period.     

Deterioration of Sediment Quality in Seagrass Meadows (<Emphasis Type="Italic">Posidonia oceanica</Emphasis>) Invaded by Macroalgae (<Emphasis Type="Italic">Caulerpa</Emphasis> sp.)

Species of the macroalgae Caulerpa sp. are increasingly being observed in meadows of the endemic Mediterranean seagrass Posidonia oceanica, and in particular Caulerpa taxifolia, has been considered as an invasive species leading to seagrass decline. Studies have so far failed to reveal the underlying mechanisms of the success of the macroalgae, and here, we examine how biogeochemical changes of the environment associated to indigenous (Caulerpa prolifera) and non-indigenous (Caulerpa racemosa and C. taxifolia) species affect the habitat of P. oceanica. Two of the species (C. prolifera and C. racemosa) affect the sediment biogeochemical conditions by increasing organic matter pools, microbial activity, and sulfide pools of the sediments, and limited effects were found for C. taxifolia. Biomass of the macroalgae contributed to the extent of impacts, and high sulfide invasion into the seagrasses and regression of the meadow were pronounced at the location with the highest Caulerpa biomass. This suggests that Caulerpa invasion contributes to seagrass decline probably because Caulerpa thrives better than the seagrasses in the modified environment.     

Assessment of bacterial diversity associated with crude oil-contaminated soil samples from Assam

In this study, we are reporting bacterial diversity in crude oil-contaminated soil of Assam, India. Integration of physiological community profiling, culture-dependent and culture-independent (metagenome) approaches, was employed to obtain a complete picture of the total bacterial diversity. Samples collected from 10 sites contaminated with crude oil ranging from 0.22 to 89.36% were analysed, and altogether 160 culturable bacteria were isolated (117 Gram-positive and 43 Gram-negative bacteria). Molecular identification showed the predominance of genera Lysinibacillus, Alcaligenes, Bacillus, Clostridium, Enterobacter and Pseudomonas. Conversely, denaturing gradient gel electrophoresis (DGGE) profiles of 16S rDNA phylotypes showed the predominance of Sphingomonas, Ralstonia, Sphingobium, Massilia, Acinetobacter and Pseudomonas. Both culture-dependent and culture-independent approaches resulted in 11 genera of which Bacillus and Pseudomonas were the key inhabitants creating most favourable bacterial milieu in the presence of crude oil contaminants. Metabolic fingerprints data depicted in PCA plot demonstrated that sites CTF-D-1 and Core-10 were most diverged. It was further confirmed that variations of bacterial species dominance in different sites were due to origin of hydrocarbon contamination. We here claim that the present findings is a first-hand report on combined physiological community profiling, culture-based and culture-independent approaches in assessing total bacterial diversity in crude oil-contaminated soil of Assam.     

Analyses of the vertical and temporal distribution of sulfate-reducing bacteria in Lake Aha (China)

In April and September of 2005, two sediment cores were collected from Lake Aha, which is polluted by the acid mine drainage of the mining industries. Sulfate-reducing bacteria (SRB) groups and their quantity were analyzed by using PCR and FISH (fluorescence in situ hybridization), respectively. The results showed that four SRB groups (Desulfotomaculum, Desulfobulbus, Desulfococcus–Desulfonema–Desulfosarcina and Desulfovibrio–Desulfomicrobium) were detected in September, while only three SRB groups (Desulfotomaculum, Desulfobulbus and Desulfococcus–Desulfonema–Desulfosarcina) were detected in April. Desulfovibrio–Desulfomicrobium was not detected and was expected to exist inactively, in April. Meanwhile, the distribution of every SRB group was wider in September than in April. The results indicated that different SRB groups had different vertical and temporal distribution. The vertical and temporal distribution of SRB was mainly in the upper sediments, and the number of SRB groups and quantity were larger in September than in April. It suggested that the environmental conditions of sediments in September were more suitable for SRB. An erratum to this article can be found at     

Use of GIS mapping and modeling approaches to examine the spatial distribution of seagrasses in Barnegat Bay, New Jersey

Due to the ecological importance of seagrasses and recent indications of disease and dieback, we have synthesized existing mapped survey information concerning the spatial and temporal distribution of seagrass beds (primarily eelgrass,Zostera marina) in Barnegat Bay, New Jersey. Mapped surveys from the 1960s, 1970s, 1980s, and 1990s were digitized and compiled in a geographic information system to facilitate analysis. Comparison of the earlier maps with the 1990s survey shows an overall decrease of approximately 2,000 to 3,000 ha in the area of seagrass beds. While there are indications of seagrass decline, due to the great difference in mapping methods used for each of the surveys, we are cautious in directly attributing the decrease in mapped eelgrass acreage to a large-scale dieback. We examined the extent to which light could be used to predict the distribution of seagrass in Barnegat Bay. Data on Secchi depth throughout the bay were combined with a modification of an existing model (Duarte 1991) of the relationship betweenZ. marina compensation depths and light attenuation coefficients to predict the distribution of seagrasses in Barnegat Bay. When compared with mapped seagrass distribution in the bay, the model correctly predicts seagrass presence-absence over two-thirds of the time. The majority of the model error is due to errors of commission, i.e., the model predicts seagrass occurrence where it was not observed to occur. Most of this commission error is located in specific geographic areas (i.e., southern third of Little Egg Harbor and the western shoreline of the bay).     

Experimental nutrient enrichment causes complex changes in seagrass, microalgae, and macroalgae community structure in Florida Bay

We examined the spatial extent of nitrogen (N) and phosphorus (P) limitation of each of the major benthic primary producer groups in Florida Bay (seagrass, epiphytes, macroalgae, and benthic microalgae) and characterized the shifts in primary producer community composition following nutrient enrichment. We established 24 permanent 0.25-m² study plots at each of six sites across. Florida Bay and added N and P to the sediments in a factorial design for 18 mo. Tissue nutrient content of the turtlegrassThalassia testudinum revealed a spatial pattern in P limitation, from severe limitation in the eastern bay (N:P>96:1), moderate limitation in two intermediate sites (approximately 63:1), and balanced with N availability in the western bay (approximately 31:1). P addition increasedT. testudinum cover by 50–75% and short-shoot productivity by up to 100%, but only at the severely P-limited sites. At sites with an ambient N:P ratio suggesting moderate P limitation, few seagrass responses to nutrients occurred. Where ambientT. testudinum tissue N:P ratios indicated N and P availability was balanced, seagrass was not affected by nutrient addition but was strongly influenced by disturbance (currents, erosion). Macroalgal and epiphytic and benthic microalgal biomass were variable between sites and treatments. In general, there was no algal overgrowth of the seagrass in enriched conditions, possibly due to the strength of seasonal influences on algal biomass or regulation by grazers., N addition had little effect on any benthic primary producers throughout the bay. The Florida Bay benthic primary producer community was P limited, but P-induced alterations of community structure were not uniform among primary producers or across Florida Bay and did not always agree with expected patterns of nutrient limitation based on stoichiometric predictions from field assays ofT. testudinum tissue, N:P ratios.     

Historical Comparison of Fish Community Structure in Lower Chesapeake Bay Seagrass Habitats

Seagrass beds provide important habitat for fishes and invertebrates in many regions around the world. Accordingly, changes in seagrass coverage may affect fish communities and/or populations, given that many species utilize these habitats during vulnerable early life history stages. In lower Chesapeake Bay, seagrass distribution has contracted appreciably over recent decades due to decreased water clarity and increased water temperature; however, effects of changing vegetated habitat on fish community structure have not been well documented. We compared fish community composition data collected at similar seagrass sites from 1976–1977 and 2009–2011 to investigate potential changes in species richness, community composition, and relative abundance within these habitats. While seagrass coverage at the specific study sites did not vary considerably between time periods, contemporary species richness was lower and multivariate analysis showed that assemblages differed between the two datasets. The majority of sampled species were common to both datasets but several species were exclusive to only one dataset. For some species, relative abundances were similar between the two datasets, while for others, there were notable differences without directional uniformity. Spot (Leiostomus xanthurus) and northern pipefish (Syngnathus fuscus) were considerably less abundant in the contemporary dataset, while dusky pipefish (Syngnathus floridae) was more abundant. Observed changes in community structure may be more attributable to higher overall bay water temperature in recent years and other anthropogenic influences than to changes in seagrass coverage at our study sites.     

Changes in the distribution of seagrass species along Florida's Central Gulf Coast: Iverson and Bittaker revisited

A broad-scale survey of seagrass species composition and distribution along Florida's central Gulf Coast (known as the Big Bend region) was conducted in the summer of 2000 to address growing concerns over the potential effects of increased nutrient loading from adjacent coastal rivers. Iverson and Bittaker (1986) originally surveyed seagrass distribution in this region between 1974–1980. We revisited 188 stations from the original survey, recording the presence or absence of all seagrass species. Although factors such as accuracy of station relocation, differences in sampling effort among studies, and length of time between surveys preclude statistical comparisons, several interesting patterns emerged. While the total number of stations occupied by the three most common seagrass species,Thalassia testudinum, Syringodium filiforme, andHalodule wrightii, was similar between the two time periods, we observed a change in the number of records of each species as well as changes in distribution with depth.T. testudinum andHalophila engelmanni occurrence declined in the deepest areas of the region, while the number of stations occupied byS. filiforme andH. wrightii increased in nearby areas. We observed several localized areas of seagrass loss, frequently associated with the mouths of coastal rivers. These results suggest that increased nutrient loading to coastal rivers that discharge into the Big Bend area may be affecting seagrasses by increasing phytoplankton abundance in the water column, thus changing water clarity characteristics of the region.     

Seagrass patches and landscapes: The influence of wind-wave dynamics and hierarchical arrangements of spatial structure on macrofaunal seagrass communities

The spatial arrangement of seagrass beds varies from scales of centimeters to meters (rhizomes, shoot groups), meters to tens of meters (patches), to tens of meters to kilometers (seagrass landscapes). In this study we examine the role of patch scale (patch size, seagrass % cover, seagrass biomass), landscape scale (fractal geometry, patch isolation) and wave exposure (mean wind velocity and exceedance) variables in influencing benthic community composition in seagrass beds at three intertidal sites in northern New Zealand (two sites in Manukau Harbour and one site in Whangapoua Harbour). Analysis of univariate community measures (numbers of individuals and species, species richness, diversity and evenness) and multivariate analyses indicated that there were significant differences in community composition inside and outside of seagrass patches at each of the three sites. Partialling out the spatial and temporal components of the ecological variation indicated that seagrass patch variables explained only 3–4% of the patch scale variation in benthic community composition at each of the sites. The temporal component was more important, explaining 12–14% of the variation. The unexplained variation was high (about 75%) at all three sites, indicating that other factors were influencing variation in community composition at the scale of the patches, or that there was a large amount of stochastic variation. Landscape and wave exposure variables explained 62.5% of the variation in the species abundance data, and the unexplained variation at the landscape level was correspondingly low (12%). Canonical correspondence analysis produced an ordination that suggests that, while mean wind velocity and exceedance were important in explaining the differences between the communities in the two harbours, spatial patterning of the habitat, primarily fractal dimension, and secondarily patch isolation (or some factors that were similarly correlated), were important in contributing to variability in community composition at the two sites in Manukau Harbour. This study suggests that spatial patterning of seagrass habitat at landscape scales, independent of the patch scale characteristics of the seagrass beds, can affect benthic community composition. Community composition inside and outside seagrass habitats involves responses to seagrass bed structure at a series of hierarchical levels, and we need to consider more than one spatial scale if we are to understand community dynamics in seagrass habitats.     

Comparative Analysis of Stability—Genetic Diversity in Seagrass (<Emphasis Type="Italic">Posidonia oceanica</Emphasis>) Meadows Yields Unexpected Results

The diversity–stability relationship is the subject of a long-standing debate in ecology, but the genetic component of diversity has seldom been explored. In this study, we analyzed the interplay between genetic diversity and demographic responses to environmental pressures. This analysis included 30 meadows formed by the Mediterranean endemic seagrass, Posidonia oceanica, showing a wide range of population dynamics ranging from a near equilibrium state to steep decline due to strong environmental pressures close to aquaculture installations. Our results show that sedimentation rates are much better predictors of mortality than clonal or genetic components. An unexpected positive trend was observed between genotypic diversity and mortality, along with a negative relationship between allelic richness and net population growth. Yet such trends disappeared when excluding the most extreme cases of disturbance and mortality, suggesting the occurrence of a threshold below which no relationship exists. These results contrast with the positive relationship between genotypic diversity and resistance or resilience observed in previous manipulative experiments on seagrass. We discuss the reasons for this discrepancy, including the difficulties in designing experiments reflecting the complexity of natural meadows.     

Pico- and Nanophytoplankton Dynamics in Two Coupled but Contrasting Coastal Bays in the NW Mediterranean Sea (France)

Due to its ecological context, the Toulon bay represents a site of scientific interest to study temporal plankton distribution, particularly pico- and nanophytoplankton dynamics. A monthly monitoring was performed during a two-year cycle (October 2013–December 2015) at two coupled sampling sites, referred to as Little and Large bays, which had different morphometric characteristics and human pressures. Flow cytometry analyses highlighted the fact that pico- and nanophytoplankton were more abundant in the eutrophic Little bay. Furthermore, it evidenced two community structures across the Toulon bays: at times, a co-dominance of picoeukaryotes, nanoeukaryotes, Synechococcus 1-like cells and Prochlorococcus-like cells was found, and at other times, a Synechococcus 1-like dominated community existed. The alternation of one structure or the other can be explained by a combined action of temperature regime, nutrient conditions and degree of contamination. This study showed that pico- and nanophytoplankton dynamics were mainly driven by temperature in both sites, as in other temperate Mediterranean regions. Thus, the community was mainly composed of picoeukaryotes and Prochlorococcus-like cells in the winter (<?15 °C), while it was dominated by Synechococcus 1-like cells in the summer (>?20 °C). Additionally, the multiple human stressors in the Little bay seemed to affect the increase in abundance of Synechococcus 1-like cells as they were preferentially observed in the Large bay.     

Ecosystem Engineering Effects of <Emphasis Type="Italic">Aster tripolium</Emphasis> and <Emphasis Type="Italic">Salicornia procumbens</Emphasis> Salt Marsh on Macrofaunal Community Structure

This paper examines how perennial Aster tripolium and annual Salicornia procumbens salt marshes alter the biomass, density, taxon diversity, and community structure of benthic macrofauna, and also examines the role of elevation, sediment grain size, plant cover, and marsh age. Core samples were collected on a fixed grid on an intertidal flat in the Westerschelde estuary (51.4° N, 4.1° E) over 5 years (2004–2008) of salt marsh development. In unvegetated areas, macrobenthic biomass, density, and taxon diversity were highest when elevation was highest, benthic diatoms were most abundant, and sediment median grain size was smallest. In contrast, in salt marsh areas, macrobenthic biomass and taxon diversity increased with median grain size, while the effects of elevation and diatom abundance on macrobenthic biomass, density, and diversity were not significant. In fine sediments, macrofaunal community structure in the salt marsh was particularly affected; common polychaetes such as Nereis diversicolor, Heteromastus filiformis, and Pygospio elegans had low abundance and oligochaetes had high abundance. Marsh age had a negative influence on the density of macrofauna, and A. tripolium stands had lower macrofaunal densities than the younger S. procumbens stands. There were no significant effects of marsh age, plant cover, and vegetation type on macrobenthic biomass, taxon diversity, and community structure. The results highlight that ecosystem engineering effects of salt marsh plants on macrofauna are conditional. Organic enrichment of the sediment and mechanical hindering of macrofaunal activity by plant roots are proposed as plausible mechanisms for the influence of the salt marsh plants on macrofauna.