The discovery of magnetotactic/magnetosensitive bacteria

Magnetotactic bacteria orient and migrate along magnetic field lines in aquatic habitats. The first     

养殖场底泥中芽孢杆菌属细菌的生态学研究

对近海养殖场底泥细菌的研究 ,发现养殖池底泥中芽孢菌为优势菌群。应用形态学、生理生化和 16SrDNA序列测定 ,对芽孢杆菌属细菌做进一步分类的结果表明 ,该属细菌在底泥中的主要种群为蜡状芽孢杆菌、巨大芽孢杆菌、短小芽孢杆菌、坚强芽孢杆菌、Bacillusbaekryungensis等。同时 ,还分析了这些芽孢杆菌属细菌在底泥元素的地球化学循环中的作用 ,认为这类细菌应属于陆生微生物 ,在养殖环境中代谢有机化合物产生氨、亚硝酸盐和H2 S ,对养殖环境产生不利的作用和影响     

Characterization and diversity of magnetotactic bacteria from sediments of Caroline Seamount in the Western Pacific Ocean

Journal of Oceanology and Limnology - Magnetotactic bacteria(MTB) are a group of microorganisms capable of orientating and swimming along magnetic fields because they contain intracellular...     

Isolation of novel psychrophilic bacteria from Arctic sea ice

The phylogenetic diversity of cuhurable psychrophilic bacteria associated with sea ice from the high latitude regions of Canadian Basin and Chukchi Sea, Arctic, was investigated. A total of 34 psychropilic strains were isolated using three methods of （ Ⅰ ） dilution plating （ at 4 ℃ ）, （ Ⅱ ） bath culturing （ at - 1 ℃ ） and dilution plating, and （ Ⅲ） cold shock （ -20 ℃ for 24 h）, bath culturing and dilution plating under aerobic conditions. Sea-ice samples were exposed to -20 ℃ for 24 h that might reduce the number of common microorganisms and encourage outgrowth of psyehrophilic strains. This process might be able to be introduced to isolation psychrophilic bacteria from other environmental samples in future study. 16S rDNA nearly full-length sequence analysis revealed that psychrophilic strains felled in two phylo- genetic divisions, γ-proteobacteria （in the genera ColweUia,Marinobaeter、Shewanella,Glaciecola,Marinomortas and Pseudoalteromortas ） and Cytophaga-Flexibacter-Baeteroides （ Flavobacterlum and Psyehroflexus）. Fifteen of bacterial isolates quite likely represented novel species （16S rDNA sequence similarity below 98% ）. One of strains （BSi20002） from Canadian Basin showed 100% sequence similarity to that of Marinobacter sp. ANT8277 isolated from the Antarctic Weddell sea ice, suggesting bacteria may have a bipolar distribution at the species level.     

Characterization of dominant giant rod-shaped magnetotactic bacteria from a low tide zone of the China Sea

Magnetotactic bacteria are a group of Gram-negative bacteria that synthesize magnetic crystals, enabling them to navigate in relation to magnetic field lines. Morphologies of magnetotactic bacteria include spirillum, coccoid, rod, vibrio, and multicellular morphotypes. The coccid shape is generally the most abundant morphotype among magnetotactic bacteria. Here we describe a species of giant rod-shaped magnetotactic bacteria(designated QR-1) collected from sediment in the low tide zone of Huiquan Bay(Yellow Sea, China). This morphotype accounted for 90% of the magnetotactic bacteria collected, and the only taxonomic group which was detected in the sampling site. Microscopy analysis revealed that QR-1 cells averaged(6.71±1.03)×(1.54±0.20) m m in size, and contained in each cell 42–146 magnetosomes that are arranged in a bundle formed one to four chains along the long axis of the cell. The QR-1 cells displayed axial magnetotaxis with an average velocity of 70±28 mm/s. Transmission electron microscopy based analysis showed that QR-1 cells had two tufts of fl agella at each end. Phylogenetic analysis of the 16 S r RNA genes revealed that QR-1 together with three other rod-shaped uncultivated magnetotactic bacteria are clustered into a deep branch of A lphaproteobacteria.     

Preliminary study on PAH degradation by bacteria from contaminated sediments in Xiamen Western Sea,Fujian, China

In order to estimate the biodegradation of three polycyclic aromatic hydrocarbons (PAHs) compounds, bacterial strains were isolated from marine sediments in three heavily contaminated sites (Yuandang Lake, Dongdu Port and Aquacultural zones in Maluan Bay) in Xiamen Western Sea. The results show three bacterial strains, which used pyrene as the sole carbon source, were identified as strains of Aureobacterium sp.,Arthrobacter sp., Rhodococcus sp. The PAH-degrading bacteria isolated had a strong ability to degrade phenanhrene, fluoranthene and pyrene at different degradation rates. The highest degradation rate was observed when three PAH compounds were mixed with an individual strain in the medium. The three PAHs were degraded after one week with a degradation rate of 89.94 % for phenanthrene and 93.4 % for both of fluoranthene and pyrene.In addition, after 25 days of incubation, the degradation rate was 99.98 % for phenanthrene and 99.97 % for both of fluoranthene and pyrene. Optical density was measured to estimate bacterial growth during the degradation of PAHs. Highest levels of bacterial growth were observed with a three PAH mixture in the culture, suggesting that the concentration of PAHs influenced bacterial growth and the highest levels of degradation for most series were detected after one week of incubation.     

Spatial distribution of pico-and nano-phytoplankton and bacteria in the Chukchi Sea in relation to water masses

We evaluated the relationships between water masses and pico- and nano-phytoplankton and bacterial abundance in the Chukchi Sea. The abundance of picoplankton ranged from 0.01 ~ 103 cells.mL1 （100 m, station R05） to 2.21 x 103 cells.mL-1 （10 m, station R05） and that of nanoplankton ranged from 0.03 x 103 cells.mL-I （100 m, station R07） to 2.21 ~ 104 cells.mLq （10 m, station R05）. The lowest abundance of bacteria in the whole water column （0.21 x 106 cells.mLq） was at 100 m at station R17, and the highest （9.61 x 106 cells.mLL） was at 10 m at station R09. Melting sea ice affected the physical characteristics of the Chukchi Sea by reducing salinity of the surface mixed layer, resulting in greater hydrodynamic stability of the water column. These changes were accompanied by increased bacterial abundance. The warm Pacific water brought nutrients into the Chukchi Sea, resulting in greater abundance of bacteria and nano-phytoplankton in the Chukchi Sea than in other regions of the Arctic Ocean. However, the abundance of pico-phytoplankton, which was related to chlorophyll a concentration, was higher in Anadyr water than in the other two water masses. The structures ofpico- and nanoplankton communities coupled with the water masses in the Chuk- chi Sea can serve as indicators of the inflow of warm Pacific water into the Chukchi Sea.     

Retreived bacteria from Noctiluca miliaris (green) bloom of the northeastern Arabian Sea

In recent years, seasonal blooms of the dinoflagellate Noctiluca miliaris have appeared in the open-waters of the northern Arabian Sea (NAS). This study provides the first characterization of bacteria from a seasonal bloom of green Noctiluca of NAS (20°N?17°N and 64°E–70°E), during the spring-inter-monsoon cruise of Sagar Sampada 253, in March 2007. Bacterial growth as assessed by most-probable number (MPN) and plate counts, revealed ‘variable-physiotypes’ over a wide range of salinities (0%–25% w/v NaCl), pH levels (5–8.5), and organic nutrient strengths, in comparison to non-bloom waters. MPN indices of bacteria in surface waters of bloom stations *DWK and *PRB, corresponded to (3.08–4.41)×10³ cells/mL at 3.5% NaCl (w/v), and (2.82–9.49)×10² cells/mL at 25% (w/v) NaCl in tryptone-yeast extract broth (TYE). Plate counts were (1.12–4)×10⁶ CFU/mL at 0% (w/v) NaCl, (1.28–3.9)×10⁶ CFU/mL at 3.5% (w/v) NaCl, and (0.4–7)×10⁴ CFU/mL at 25% NaCl (w/v) on TYE. One-tenth-strength Zobell’s gave (0.6–3.74)×10⁵ CFU/mL at pH 5 to (3.58–7.5)×10⁵ CFU/mL at pH 8.5. These bacteria were identified to the genera Bacillus, Cellulomonas, Staphylococcus, Planococcus, Dietzia, Virgibacillus, Micrococcus, Sporosarcinae, Leucobacter, and Halomonas. The identity of three strains (GUFBSS253N2, GUFBSS253N30, and GUFBSS253N84) was confirmed through 16S rDNA sequence homology as Bacillus cohnii, Bacillus flexus, and Bacillus cereus. The ～2–3-fold higher plate counts of culturable bacteria from the open-waters of the NAS indicate that these bacteria could critically determine the biogeochemical dynamics of the bloom and its milieu. The role of these bacteria in sustaining/terminating the bloom is under evaluation.     

Occurrence and microscopic analyses of multicellular magnetotactic prokaryotes from coastal sediments in the Yellow Sea

Multicellular magnetotactic prokaryotes(MMPs) are a group of aggregates composed of 7-45 gram-negative cells synthesizing intracellular magnetic crystals.Although they are thought to be globally distributed,MMPs have been observed only in marine environments in America and Europe.Most MMPs share a rosette-like morphology and biomineralize iron sulfide crystals.In the present study,abundant MMPs were observed,with a density of 26 ind./cm3,in the sediments of a coastal lagoon,Lake Yuehu,in the Yellow Sea.Optical microscopy showed that all of them were rosette shaped with a diameter of 5.5±0.8 mm.Transmission electron microscopy revealed that these MMPs were composed of 10-16 ovoid cells and flagellated peritrichously.High-resolution transmission electron microscopy and energy dispersive X-ray analysis indicated that they biomineralized bullet-shaped magnetite crystals in highly organized parallel chains within which the magnetosomes were oriented in the same direction.This is the first report of MMPs from Asia and demonstrates the ubiquitous distribution of MMPs.     

BIOGEOCHEMICAL PROCESSES OF PHOSPHORUS AND SILICON IN SOUTHERN BOHAI SEA SURFACE SEDIMENTS

Based on the author’s previously obtained results on P and Si forms in southern Bohai Sea surface sediments,this study maindy foucusing on the controlling factors,existence forms,and biogeo-chemical processes of P and Si showed that the transferable forms of phosphorus in sediments were mainly controlled by the mineralization of organic matters and the reduction of high-valence iron;whereas the transferable forms of silicon were possibly controlled by the dissolution and precipitation as well as bio-chemical processes of living organisms.     

Distribution of general aerobic heterotrophic bacteria in sediment core taken from the Canadian basin and the Chukchi Sea

The occurrence percentage and abundance of General Aerobic Hetero- trophic Bacteria （GAB） were determined by using the method of MPN for 182 sub- samples from 10 sediment cores taken from the Canadian basin and the Chukchi Sea at two different culturing temperatures. The results showed that the general occurrence percentage of GAB was quite high, average abundanees of GAB at cultured temperatares of 4℃ and 25℃ were 4.46 ×10^7 and 5.47×10^7 cells·g^-1（wt）, respectively. The highest abundance of GAB occurred at 20 -22 cm section in the sediment. GAB abundances changed among the section of sediments, but there is a trend ： the a-bundances at the middle or lower sections were lower than those at upper section. Cultivation at 25℃ could improve the occurrence percentage and abundances of GAB, which suggests that the increasing of temperature may change the living circum-stances of GAB. The differences of GAB among the latitudes areas indicated that occurrence percentage and abundances of GAB in middle latitude areas were higher than those in the higher or lower latitude areas, and were more obvious at 4℃ than those at 25℃. The GAB abundances in sediment under the shallower water seemed to be low- er than those in sediments under the deeper water and this status was more obvious at 25℃ than that at 4℃.     

Antifouling potential of bacteria isolated from a marine biofilm

Marine microorganisms are a new source of natural antifouling compounds. In this study, two bacterial strains, Kytococcus sedentarius QDG-B506 and Bacillus cereus QDG-B509, were isolated from a marine biofilm and identified. The bacteria fermentation broth could exert inhibitory effects on the growth of Skeletonema costatum and barnacle larvae. A procedure was employed to extract and identify the antifouling compounds. Firstly, a toxicity test was conducted by graduated pH and liquid-liquid extraction to determine the optimal extraction conditions. The best extraction conditions were found to be pH 2 and 100% petroleum ether. The EC50 value of the crude extract of K. sedentarius against the test microalgae was 236.7 ± 14.08 μg mL-1, and that of B. cereus was 290.6 ± 27.11 μg mL-1. Secondly, HLB SPE columns were used to purify the two crude extracts. After purification, the antifouling activities of the two extracts significantly increased: the EC50 of the K. sedentarius extract against the test microalgae was 86.4 ± 3.71 μg mL-1, and that of B. cereus was 92.6 ± 1.47 μg mL-1. These results suggest that the metabolites produced by the two bacterial strains are with high antifouling activities and they should be fatty acid compounds. Lastly, GC-MS was used for the structural elucidation of the compounds. The results show that the antifouling compounds produced by the two bacterial strains are myristic, palmitic and octadecanoic acids.     

Abundance and Biomass of Benthic Bacteria in Jiaozhou Bay, China

The abundance and biomass of benthic heterotrophic bacteria were investigated for the 4 typical sampling stations in the northern muddy part of Jiaozhou Bay, estuary of the Dagu River, raft culturing and nearby areas of Huangdao in March, June, August and December, 2002. The abundance and biomass range from 0.98×10⁷ to 16.87×10⁷ cells g⁻¹ sediment and 0.45 to 7.08 μg C g⁻¹ sediment, respectively. Correlation analysis showed that heterotrophic bacterial abundance and biomass are significantly correlated to water temperature (R=0.79 and 0.83, respectively,P<0.01).     

Response of marine microalgae,heterotrophic bacteria and their relationship to enhanced UV-B radiation

Ozone depletion in the stratosphere has enhanced solar UV-B radiation reaching the Earth surface and has brought about significant effects to marine ecosystems. The effects of enhanced UV-B radiation on marine microalgae, heterotrophic bacteria and the interaction between them are discussed. The effects on marine microalgae have been proved to occur at molecular, cellular and population levels. Enhanced UV-B radiation increases microalgal flavonoid content but decreases their chlorophyll content and pho-tosynthesis rate; this rachation induces genetic change and results in DNA damage and change of protein content. There have been fewer studies on the effects of UV-B radiation on marine heterotrophic bacteria. Establishment of a nucroalgal ecological dynamic model at population and community levels under UV-B radiation has gradually become a hotspot. The effects of enhanced UV-B radiation on microalgae communities, heterotrophic bacterial populations and interaction between them will become a focus in the near future. This paper will make an overview on the studies concerning the effects of enhanced UV-B radiation on marine microal-gae and heterotrophic bacteria and the interaction between them.     

Isolation and identification of bacteria associated with the surfaces of several algal species

We conducted this study to assess the diversity of bacteria associated with the surfaces of algae based on 16S rDNA sequence analyses.Twelve strains of bacteria were obtained from the surfaces of the following four species of algae:Gracilaria textorii,Ulva pertusa,Laminaria japonica,and Polysiphonia urceolata.The isolated strains of bacteria can be divided into two groups:Halomonas and Vibrio,in physiology,biochemical characteristics and 16S rDNA sequence analyses.The phylogenetic tree constructed based on ...     

Extracellular enzymatic activities of cold-adapted bacteria from polar oceans and effect of temperature and salinity on cell growth

The potential of 324 bacteria isolated from different habitats in polar oceans to produce a variety of extracellular enzymatic activities at low temperature was investigated. By plate assay, lipase, protease, amylase, gelatinase, agarase, chitinase or cellulase were detected. Lipases were generally present by bacteria living in polar oceans. Protease-producing bacteria held the second highest proportion in culturable isolates. Strains producing amylase kept a relative stable proportion of around 30% in different polar marine habitats. All 50 Arctic sea-ice bacteria producing proteases were cold-adapted strains, however, only 20% were psychrophilic. 98% of them could grow at 3% NaCl, and 56% could grow without NaCl. On the other hand, 98% of these sea-ice bacteria produced extracellular proteases with optimum temperature at or higher than 35℃, well above the upper temperature limit of cell growth. Extracellular enzymes including amylase, agarase, cellulase and lipase released by bacteria from seawater or sediment in polar oceans, most expressed maximum activities between 25 and 35℃. Among extracellular enzymes released by bacterial strain BSw20308, protease expressed maximum activity at 40℃, higher than 35℃ of polysaccharide hydrolases and 25℃ of lipase.     

EFFECT OF SULPHATE-REDUCING BACTERIA ON ELECTRO-CHEMICAL CORROSION BEHAVIOR OF 16Mn STEEL IN SEA MUD

ＩＮＴＲＯＤＵＣＴＩＯＮＩｔｗａｓｇｅｎｅｒａｌｌｙｃｏｎｓｉｄｅｒｅｄｐｒｅｖｉｏｕｓｌｙｔｈａｔｔｈｅｃｏｒｒｏｓｉｏｎｏｆｓｔｅｅｌｉｎｓｅａｍｕｄｗａｓｎｏｔｓｅｒｉｏｕｓ.Ｈｏｗｅｖｅｒ,ｉｔｗａｓｌａｔｅｒｆｏｕｎｄｔｈａｔｔｈｅｃｏｒｒｏｓｉｏｎｒａｔｅｏｆｓｔｅｅｌｉｎｓｏｍｅｓｅａｍｕｄｗａｓｈｉｇｈｅｒｔｈａｎｔｈａｔｉｎｓｅａｗａｔｅｒ(Ｋｉｎｇ,1980;Ｓｅｈｍｉｄｅ,1982;Ｇｕｏｅｔａｌ.,1997;Ｈｏｕ,1998).Ｔｈｅｒｅａｒｅｓｏｍｅｒｅｐｏｒｔｓｔｈａｔｔｈｅｃｏｒｒｏｓｉｏｎｒ…     

Phylogenetic analysis of cultivable bacteria isolated from Arctic sea-ice

Phylogenetic analysis based on 16S rDNA of 8 strains of cultivable bacteria isolated from Arctic sea-ice was studied.The results showed that strain BJ1 belonged to genus Planococcus,which was a genus of low mole percent G C gram-positive bacteria;strain BJ6 belonged to genus Burkholderia of β-proteobacteria and the rest 6 strain all belonged to γ-proteobacteria,of which strain BJ8 was a species of Pseudoalteromonas,strain BJ2-BJ5 and BJ7 were members of genus Psychrobacter.Phylogenetic analysis also indicated that bacteria of genus Psychrobacter of the isolates formed a relatively independent phylogenetic cluster in comparison with other bacteria belonged to genus Psychrobacter.     

Antimicrobial activities of novel cultivable bacteria isolated from marine sponge Tedania anhelans

Marine sponge Tedania anhelans distributes throughout the intertidal zone of Fujian, southeastern China, and is a potential source of natural bioactive products. The sponge harbors a large number of bacterial groups that have been identified using various techniques, including fluorescent in situ hybridization (FISH). Fractionation of dissociated sponge allowed isolation of 25 bacterial species. Based on 16S rRNA gene sequencing, phylogenetic analysis attributed most of these eubacteria to α-Proteobacteria, γ-Proteobacteria, Cytophaga/Flavobacterium/Bacteroidetes (CFB group), and the family Bacillaceae of Gram-positive bacteria. In sequence similarity, five putatively novel species were identified with less than 98% similarity to other strains in the NCBI database. Tests for antimicrobial activities were performed against Gram-positive bacteria, Gram-negative bacteria, fungi, antitumor indicators Escherichia coli 343/591 (with DNA repair deficiency), regular E. coli 343/636 (with different DNA repair capacity), and 10 bacterial isolates exhibited inhibitory bioactivities. Among these strains, three isolates were detected involving function gene NRPS-A domains, which were most closely related to the amino acid sequences of linear gramicidin synthetase and pyoverdine synthetase. These results contribute to our knowledge of the microbes associated with marine sponges and further reveal novel bacterial resources for the screening of bioactive marine natural products.     

Variation of bacteria biomass and its possible controlling factors in the East China Sea

Two surveys were performed for determining bacteria biomass (BB), temperature, salinity, chlorophyll a (chl-a) and nutrient concentrations at 11 stations with three sampling depths in the high-incidence regions of red tide in the East China Sea (ECS) in the spring of 2006. Temperature and salinity increased from nearshore to offshore region and from high latitude to low latitude in the two cruises of 2006. BB were between 0.3–5.2 mgC m⁻³ (about 2.1 mgC m⁻³ on average) and 0.2–6.0 mgC m⁻³ (about 2.7 mgC m⁻³ on average) respectively in the two cruises. BB in the surface layer decreased from the Changjiang River estuary to high sea and from low latitude to high latitude. The results showed that bacterial growth was regulated by temperature, primary production and inorganic nutrient concentrations depending on different hydrographic conditions. In the surface and middle layers where the primary production can supply enough organic substrate, temperature was the main factor to control bacteria biomass. BB showed a good correlation between the surface and middle layers in both cruises. The distribution of nutrients during both cruises showed a similar decreasing trend from nearshore region and high latitude to offshore region and low latitude. High BB values were mainly recorded from samples in the middle layer where chl-a concentrations were also high, indicating primary production being strongly correlated with temperature over the ECS shelf. In the offshore area, phosphate and silicate became limiting factors for phytoplankton growth with indirect influence on BB. Bacteria played an important role in nitrogen regeneration process turning organic nitrogen to inorganic forms such as NH₄ ⁺. The increasing ratio of NH₄ ⁺/DIN could be a proof of that.