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古尔班通古特沙漠地衣结皮中可培养细菌多样性初探
引用本文:吴楠,张元明,潘惠霞,邱东.古尔班通古特沙漠地衣结皮中可培养细菌多样性初探[J].中国沙漠,2013,33(3):710-716.
作者姓名:吴楠  张元明  潘惠霞  邱东
作者单位:1.中国科学院新疆生态与地理研究所 干旱区生物地理与生物资源重点实验室, 新疆 乌鲁木齐 830011; 2.新疆农业大学 草业与环境科学学院, 新疆 乌鲁木齐 830052
基金项目:新疆维吾尔自治区青年科学基金项目,中国科学院"西部之光"项目,科技部国际合作项目,国家自然科学基金项目
摘    要:为了解古尔班通古特沙漠优势结皮类型--地衣结皮中可培养细菌的多样性,利用3种培养基经稀释涂布和划线分离得到18株纯培养菌株。对分离的所有菌株提取基因组DNA,利用细菌通用引物扩增得到16S rDNA的序列并测序。结果表明:(1)基于Ribosomal Database Project (RDP)在线归类分析,18株菌可初步归为3门3纲3目6科6属,未见新属,未分离到固氮菌属(Azotobacter)。其中,6株归为变形菌门(Proteobacteria)、6株属于放线菌门(Actinobacteria)、6株属于厚壁菌门 (Firmicutes); 不动杆菌属(Acinetobacter)、链霉菌属(Streptomyces)、芽孢杆菌属(Bacillus)为优势属,分别占分离菌株数的33%、28%、22%。(2)在EzTaxon-e数据库中对各菌株序列进行进一步的BLAST同源性分析表明,18株菌可进一步归为14个OTUs(Operational Taxonomic Unit),未见疑似新种(同源性均>97%),其中链霉菌属OTU比例最高(35.71%),依次为不动杆菌属和芽孢杆菌属(二者均为21.43%)。(3)古尔班通古特沙漠地衣结皮中的可培养细菌Shannon-Wiener多样性指数为2.5532,均匀度指数为0.9675。(4)上述可培养细菌在生物土壤结皮中具有固沙、加速矿化、生防等多重生态潜能。

关 键 词:原核生物    RDP在线归类    EzTaxon-e数据库    Shannon-Wiener  多样性指数    链霉菌属  
收稿时间:2012-06-19
修稿时间:2012-08-10

Culture-dependent Bacteria Diversity of Lichen Crusts in the Gurbantunggut Desert
WU Nan,ZHANG Yuan-ming,PAN Hui-xia,Qiu dong.Culture-dependent Bacteria Diversity of Lichen Crusts in the Gurbantunggut Desert[J].Journal of Desert Research,2013,33(3):710-716.
Authors:WU Nan  ZHANG Yuan-ming  PAN Hui-xia  Qiu dong
Institution:1.Key laboratory of Biogeography and Bioresource in Arid land, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi 830011,China; 2.College of Pratacultural and Environmental Science, Xinjiang Agricultural University, Urumqi 830052, China
Abstract:Lichen crusts is the main type biological soil crusts(BSCs) in the southern part of the Gurbantunggut Desert and served as one of the important nitrogen resource. It is also one of the sensitive biomonitors of desert ecosystem health, habitat heterogeneity and human induced disturbances. Using three different medium, 18 bacterial strains were isolated from lichen crusts. Phylogenetic analysis of partia1 16S rDNA sequences showed that: (1) These strains were clustered into 3 phyla, 3 classes, 3 orders, 6 families and 6 genera via Ribosomal Database Project (RDP) classifier. The phyla Proteobacteria, Actinobacteria and Firmicutes each owned 6 of the 18 strains. The dominant genera were Acinetobacter (33%), Streptomyces (28%) and Bacillus (22%). (2) Further classification of these strains was achieved via Basic Local Alignment Search Tool (BLAST) Homology analysis of the partial 16S rDNA against the EzTaxon-e database. BLAST results yielded 14 Operational Taxonomic Units (OTUs) and no novel species whose sequence similarity was lower than 97% compare to the species in the EzTaxon-e database.were obtained. Most of these OTUs belonged to the genus Streptomyces (35.71%). (3) The Shannon-Wiener diversity index was 2.5532, a value lower than that of BSCs for the Hunsandake Desert. (4) These culture-dependent bacteria might play important roles in fixing sand particles, releasing plant-available nutrients from soil minerals and inhibiting the growth of plant pathogens, thereby promoting BSCs development.
Keywords:prokaryote  Ribosomal Database Project (RDP) classifier  EzTaxon-e database  Shannon-Wiener diversity index  Streptomyces  
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