Detection of stress in tomatoes induced by late blight disease in California, USA, using hyperspectral remote sensing

Large-scale farming of agricultural crops requires on-time detection of diseases for pest management. Hyperspectral remote sensing data taken from low-altitude flights usually have high spectral and spatial resolutions, which can be very useful in detecting stress in green vegetation. In this study, we used late blight in tomatoes to illustrate the capability of applying hyperspectral remote sensing to monitor crop disease in the field scale and to develop the methodologies for the purpose. A series of field experiments was conducted to collect the canopy spectral reflectance of tomato plants in a diseased tomato field in Salinas Valley of California. The disease severity varied from stage 1 (the light symptom), to stage 4 (the sever damage). The economic damage of the crop caused by the disease is around the disease stage 3. An airborne visible infrared imaging spectrometer (AVIRIS) image with 224 bands within the wavelength range of 0.4–2.5 μm was acquired during the growing season when the field data were collected. The spectral reflectance of the field samples indicated that the near infrared (NIR) region, especially 0.7–1.3 μm, was much more valuable than the visible range to detect crop disease. The difference of spectral reflectance in visible range between health plants and the infected ones at stage 3 was only 1.19%, while the difference in the NIR region was high, 10%. We developed an approach including the minimum noise fraction (MNF) transformation, multi-dimensional visualization, pure pixels endmember selection and spectral angle mapping (SAM) to process the hyperspectral image for identification of diseased tomato plants. The results of MNF transformation indicated that the first 28 eigenimages contain useful information for classification of the pixels and the rest were mainly noise-dominated due to their low eigenvalues that had few signals. Therefore, the 28 signal eigenimages were used to generate a multi-dimensional visualization space for endmember spectra selection and SAM. Classification with the SAM technique of plants’ spectra showed that the late blight diseased tomatoes at stage 3 or above could be separated from the healthy plants while the less infected plants (at stage 1 or 2) were difficult to separate from the healthy plants. The results of the image analysis were consistent with the field spectra. The mapped disease distribution at stage 3 or above from the image showed an accurate conformation of late blight occurrence in the field. This result not only confirmed the capability of hyperspectral remote sensing in detecting crop disease for precision disease management in the real world, but also demonstrated that the spectra-based classification approach is an applicable method to crop disease identification.