Evaluation of the performance of HPLC–CHEMTAX analysis for determining phytoplankton biomass and composition in a turbid estuary (Schelde, Belgium)

In the upper Schelde estuary in 2002, phytoplankton biomass and community composition were studied using microscopic and pigment analyses. Chlorophyll a concentration was a good predictor of phytoplankton biomass estimated from cell counts and biovolume measurements. The phytoplankton carbon to chlorophyll a ratio, however, was often unrealistically low (<10). CHEMTAX was used to estimate the contribution of the major algal groups to total chlorophyll a. The dominant algal groups were diatoms and chlorophytes. While diatom equivalents in chlorophyll a predicted diatom biomass relatively well, chlorophyte equivalents in chlorophyll a were only weakly related to chlorophyte biomass. The pigment-based approach to study phytoplankton overestimated phytoplankton biomass in general and chlorophyte biomass in particular in late autumn and winter, when phytoplankton biomass was low. A possible explanation for this overestimation may be the presence of large amounts of vascular plant detritus in the upper Schelde estuary. Residual chlorophyll a, chlorophyll b and lutein in this detritus may result in an overestimation of total phytoplankton and chlorophyte biomass when the contribution of phytoplankton to total particulate organic matter is low.     

浮游植物化学分类法—CHEMTAX运算在南中国海应用的改进和优化

In order to determine the phytoplankton community composition, the modification and optimizing of the CHEMical TAXonomy (CHEMTAX) running was carried out through samples grouping, successive run and ev...     

基于三维荧光光谱-平行因子技术联用的浮游藻化学分类学技术研究

An in vivo three-dimensional fluorescence method for the determination of algae community structure was developed by parallel factor analysis(PARAFAC) and CHEMTAX. The PARAFAC model was applied to fluorescence excitation-emission matrix(EEM) of 60 algae species belonging to five divisions and 11 fluorescent components were identified according to the residual sum of squares and specificity of the composition profiles of fluorescent. By the 11 fluorescent components, the algae species at different growth stages were classified correctly at the division level using Bayesian discriminant analysis(BDA). Then the reference fluorescent component ratio matrix was constructed for CHEMTAX, and the EEM–PARAFAC–CHEMTAX method was developed to differentiate algae taxonomic groups. The correct discrimination ratios(CDRs) when the fluorometric method was used for single-species samples were 100% at the division level, except for Bacillariophyta with a CDR of 95.6%. The CDRs for the mixtures were above 94.0% for the dominant algae species and above 87.0% for the subdominant algae species. However, the CDRs of the subdominant algae species were too low to be unreliable when the relative abundance estimated was less than 15.0%. The fluorometric method was tested using the samples from the Jiaozhou Bay and the mesocosm experiments in the Xiaomai Island Bay in August 2007. The discrimination results of the dominant algae groups agreed with microscopy cell counts, as well as the subdominant algae groups of which the estimated relative abundance was above 15.0%. This technique would be of great aid when low-cost and rapid analysis is needed for samples in a large batch. The fluorometric technique has the ability to correctly identify dominant species with proper abundance both in vivo and in situ.     

Phytoplankton community structures in shelf and oceanic waters off southeast Brazil (20°–25°S), as determined by pigment signatures

The influences of the hydrological features and environmental conditions in the phytoplankton community found in the Campos Basin area in the Atlantic Ocean (20° to 25°S; 42° to 38°W) were studied using HPLC/CHEMTAX pigment analysis. Samples were collected at 72 stations distributed along the 25–3000 m isobaths at two depths during two seasonal periods (rainy and dry). Seven taxonomic groups of phytoplankton were detected (diatoms, dinoflagellates, prasinophytes, cryptophytes, haptophytes, pelagophytes and cyanobacteria). Redundancy analysis showed that the spatial and temporal patterns observed in the distribution of the phytoplanktonic groups were primarily related to variations in the availability of light and nutrients. Nutrient variations were caused by South Atlantic Central Water seasonal intrusions over the continental shelf region. Cyanobacteria predominated in the rainy season, while diatoms, Haptophyceae and Prasinophyceae, were associated with higher nutrient availability in the dry season. In the inner shelf region, diatoms dominated and were associated with increased conditions of turbulence and nutrient availability. Haptophytes and prasinophytes were predominant on the outer shelf and shelf-break regions associated with high nutrient concentrations and availability of light. Prochlorococcus was related to oceanic waters (in both dry and rainy periods) or to low nutrient/strongly stratified shelf waters (rainy period). In contrast, Synechococcus was widely distributed in both the shelf and oceanic regions. Variation in the quality of light between coastal and oceanic waters was probably responsible for the distributions observed. Through HPLC/CHEMTAX pigment analysis we have developed a detailed picture of the influence of hydrological regime on the dynamics of the phytoplankton community in an under-studied shelf/ocean system in the tropical southern Atlantic Ocean.     

Phytoplankton composition and biomass across the southern Indian Ocean

Phytoplankton composition and biomass was investigated across the southern Indian Ocean. Phytoplankton composition was determined from pigment analysis with subsequent calculations of group contributions to total chlorophyll a (Chl a) using CHEMTAX and, in addition, by examination in the microscope. The different plankton communities detected reflected the different water masses along a transect from Cape Town, South Africa, to Broome, Australia. The first station was influenced by the Agulhas Current with a very deep mixed surface layer. Based on pigment analysis this station was dominated by haptophytes, pelagophytes, cyanobacteria, and prasinophytes. Sub-Antarctic waters of the Southern Ocean were encountered at the next station, where new nutrients were intruded to the surface layer and the total Chl a concentration reached high concentrations of 1.7 ??g Chl a L⁻¹ with increased proportions of diatoms and dinoflagellates. The third station was also influenced by Southern Ocean waters, but located in a transition area on the boundary to subtropical water. Prochlorophytes appeared in the samples and Chl a was low, i.e., 0.3 ??g L⁻¹ in the surface with prevalence of haptophytes, pelagophytes, and cyanobacteria. The next two stations were located in the subtropical gyre with little mixing and general oligotrophic conditions where prochlorophytes, haptophytes and pelagophytes dominated. The last two stations were located in tropical waters influenced by down-welling of the Leeuwin Current and particularly prochlorophytes dominated at these two stations, but also pelagophytes, haptophytes and cyanobacteria were abundant. Haptophytes Type 6 (sensuZapata et al., 2004), most likely Emiliania huxleyi, and pelagophytes were the dominating eucaryotes in the southern Indian Ocean. Prochlorophytes dominated in the subtrophic and oligotrophic eastern Indian Ocean where Chl a was low, i.e., 0.043-0.086 ??g total Chl a L⁻¹ in the surface, and up to 0.4 ??g Chl a L⁻¹ at deep Chl a maximum. From the pigment analyses it was found that the dinoflagellates of unknown trophy enumerated in the microscope at the oligotrophic stations were possibly heterotrophic or mixotrophic. Presence of zeaxanthin containing heterotrophic bacteria may have increased the abundance of cyanobacteria determined by CHEMTAX.     

Phytoplankton pigment patterns and community composition in the northern South China Sea during winter

Phytoplankton pigment patterns and community composition were investigated in the northern South China Sea using high-performance liquid chromatography and the CHEMTAX software from February 11 to 23, 2009. We recognized four different vertical distribution patterns of pigments: chlorophyll a (Chl a)-like type, divinyl chlorophyll a (DV Chl a) type, even distribution type, and surface type. The average value of ratios of accessory photo-protective pigments (APP) to accessory photo-synthetic pigments was 0.89±0.63 in the upper 50 m and 0.16±0.06 below 50 m depth. With increasing depth, APP decreased and photo-synthetically active radiation was attenuated. There was an obvious succession in the phytoplankton community from inshore to the open sea. Diatoms were dominant in the inshore region, while pelagophytes, Prochlorococcus, cyanobacteria and prymnesiophytes were dominant in the open sea. The vertical distribution of phytoplankton also differed greatly from inshore to the open sea. In the coastal and shelf region, diatoms were important components in the whole water column. Cyanobacteria also had a high abundance at the Subsurface Chlorophyll a Maxima (SCM) in the shelf region. In the slope and open sea, Prochlorococcus and cyanobacteria were important groups above the SCM, while pelagophytes dominated below the SCM.     

Algal pigment patterns and phytoplankton assemblages in different water masses of the Río de la Plata maritime front

The composition of phytoplankton assemblages were studied in three sections across the continental shelf between the Río de la Plata and the oceanic waters of the Subtropical Convergence, during late spring. Algal communities were examined using microscopy and HPLC-derived pigment concentrations. The CHEMTAX program was used to estimate the chlorophyll a (chl a) biomass of different algal classes. Trends in pigment ratios due to phytoplankton photo-adaptation and photo-acclimation were also examined. In order to accommodate the natural diversity of phytoplankton assemblages the original data have been split to represent five ecosystems. In addition, the pigment data for the Brazil Current ecosystem has been split by sample depth.     

Temporal variation in phytoplankton composition related to water mass properties in the central part of Sagami Bay

Temporal variations in water mass properties and the composition of phytoplankton pigments in the central part of Sagami Bay were investigated by monthly observations from June 2002 to May 2004. Eleven pigments were quantified using high-performance liquid chromatography (HPLC) from 100%, 20%, and 5% light depths relative to the surface; the class-specific composition of phytoplankton community was then obtained by CHEMTAX analysis. The study area was influenced by the Kuroshio water for most of the observation period. The mean contribution of diatoms in all samples was relatively low (29%), while that of flagellates, mainly chlorophytes or cryptophytes, was quite high (60%). The phytoplankton composition at the three depths was uniform throughout the observation period, indicating that the vertical structure of the phytoplankton community did not develop significantly over time. A distinct temporal pattern was observed: flagellates dominated during the summer of 2002 and the winters of 2002–2003 and 2003–2004, while diatoms dominated during the summer of 2003. This pattern was associated with water mass changes. The community in the summer of 2003 was influenced by coastal water. While no distinct spring bloom of phytoplankton was observed, a weak increase in chlorophyll a was observed during the spring of 2004. Ocean color satellite data showed that fluctuations in chlorophyll a concentrations at time scales much shorter than a month occurred during the spring of 2003 and that the elevations in chlorophyll a levels were not continuous. The fluctuations were probably associated with rapid flushing by the Kuroshio water, which has low chlorophyll a content.     

Phytoplankton-pigment signatures and their relationship to spring–summer stratification in the Gulf of Gabes

We investigated the phytoplankton dynamics (determined by CHEMTAX analysis of HPLC pigment data) and its relationships with nutrients and water column structure, during two oceanographic cruises in May–June and September 2006 in the Gulf of Gabes (south-eastern Mediterranean). The May–June cruise coincided with the beginning of the summer stratification, while a strong stratification occurred in September with a more than 30 m deepening of the thermocline, and a reduction of the euphotic depth. This strong stratification resulted in a shift in nitrogen sources from nitrates to ammonium as well as phosphate depletion (0.2 μM) and a decrease in silicate concentrations (<2 μM). With the exception of chlorophyll a, pigment concentrations were higher in September than in May–June samplings. The pico- and nanophytoplankton were the major contributors to phytoplankton total biomass, accounting for 90% and 87% of total chlorophyll a in May–June and September, respectively. Picoplankton persisted throughout the entire survey, occupying different depth layers. Chlorophytes were present at substantial amounts (average 23% of total chlorophyll a) during May–June; however, they declined in September (average 5%). Diatoms were overall poorly represented in this study (2% of total chlorophyll a), due probably to silicate shortage. Apparently, the nutrient availability, but also the water column stability seemed to be among the major factors determining phytoplankton dynamics. Indeed, cyanobacteria were prominent in surface samples during the period of strong stratification, whereas the relative contribution of chlorophytes decreased, probably due to low phosphate availability.     

Seasonal variability of phytoplankton biomass and composition in the major water masses of the Indian Ocean sector of the Southern Ocean

Long-term changes in phytoplankton biomass and community composition are important in the ecosystem and biogeochemical cycle in the Southern Ocean. We aim to ultimately evaluate changes in phytoplankton assemblages in this region on a decadal scale. However, yearly continuous data are lacking, and long-term datasets often include seasonal variability. We evaluated the seasonal changes in phytoplankton abundance/composition across latitudes in the Indian Ocean sector of the Southern Ocean via multi-ship observations along the 110°E meridian from 2011 to 2013. The chlorophyll a concentration was 0.3–0.5 mg m⁻³ in the Subantarctic Zone (40–50°S) and 0.4–0.6 mg m⁻³ in the Polar Frontal Zone (50–60°S); pico-sized phytoplankton (<10 μm), mainly haptophytes, were dominant in both zones. In the Antarctic Divergence area (60–65°S), the chlorophyll a concentration was 0.6–0.8 mg m⁻³, and nano-sized phytoplankton (>10 μm), mainly diatoms, dominated. Chlorophyll a concentrations and phytoplankton community compositions were the same within a latitudinal zone at different times, except during a small but distinct spring bloom that occurred north of 45°S and south of 60°S. This small seasonal variation means that this part of the Southern Ocean is an ideal site to monitor the long-term effects of climate change.