Investigation and sensitivity analysis of a mechanistic phytoplankton model implemented in a new modular numerical tool (Eco3M) dedicated to biogeochemical modelling

A new class of phytoplankton models with a mechanistic basis has been presented in a companion paper (Baklouti, M., Diaz, F., Pinazo, C., Faure, V., Queguiner, B., 2006. Investigation of mechanistic formulations depicting phytoplankton dynamics for models of marine pelagic ecosystems. Progress in Oceanography). It is the default class of models implemented in our new numerical tool Eco3M, which is dedicated to Ecological, Mechanistic and Modular Modelling. A brief overview of its main features is given in Section 2 of the present paper. In the next sections, a particular phytoplankton model among the aforementioned class has been tested with special emphasis on the mechanistic photosynthesis component relating the photosynthetic rate to the proportion of open photosystems II. The present study encompasses several essential steps that are inherent to any modelling, including model reduction, model sensitivity analysis and comparison of model outputs with experiments. The global sensitivity analysis of the plankton model for one-at-a-time parameter perturbations revealed a restricted set of parameters having major influence on the model outputs. Sensitivity tests involving simultaneous parameter perturbations within the range actually encountered in the literature provided a confidence interval for the outputs. Chemostat experiments performed on nitrate-limited diatoms grown under low (LL) and high-light (HL) conditions have been used for comparison with model outputs. The good fit between measured data and model outputs using the same parameter values in both the LL and HL cases demonstrates the ability of our model to represent the main features of phytoplankton dynamics including photoacclimation. Finally, Eco3M is ultimately intended to include explicit bacterial and zooplankton compartments, as well as to be coupled with ocean circulation models, but the intrinsic behavior of the phytoplankton model has been investigated first, independently of physical forcing.     

Correspondence between the distribution of hydrodynamic time parameters and the distribution of biological and chemical variables in a semi-enclosed coral reef lagoon

Hydrodynamic modeling can be used to spatially characterize water renewal rates in coastal ecosystems. Using a hydrodynamic model implemented over the semi-enclosed Southwest coral lagoon of New Caledonia, a recent study computed the flushing lag as the minimum time required for a particle coming from outside the lagoon (open ocean) to reach a specific station [Jouon, A., Douillet, P., Ouillon, S., Fraunié, P., 2006. Calculations of hydrodynamic time parameters in a semi-opened coastal zone using a 3D hydrodynamic model. Continental Shelf Research 26, 1395–1415]. Local e-flushing time was calculated as the time requested to reach a local grid mesh concentration of 1/e from the precedent step. Here we present an attempt to connect physical forcing to biogeochemical functioning of this coastal ecosystem. An array of stations, located in the lagoonal channel as well as in several bays under anthropogenic influence, was sampled during three cruises. We then tested the statistical relationships between the distribution of flushing indices and those of biological and chemical variables. Among the variables tested, silicate, chlorophyll a and bacterial biomass production present the highest correlations with flushing indices. Correlations are higher with local e-flushing times than with flushing lags or the sum of these two indices. In the bays, these variables often deviate from the relationships determined in the main lagoon channel. In the three bays receiving significant riverine inputs, silicate is well above the regression line, whereas data from the bay receiving almost insignificant freshwater inputs generally fit the lagoon channel regressions. Moreover, in the three bays receiving important urban and industrial effluents, chlorophyll a and bacterial production of biomass generally display values exceeding the lagoon channel regression trends whereas in the bay under moderate anthropogenic influence values follow the regressions obtained in the lagoon channel. The South West lagoon of New Caledonia can hence be viewed as a coastal mesotrophic ecosystem that is flushed by oligotrophic oceanic waters which subsequently replace the lagoonal waters with water considerably impoverished in resources for microbial growth. This flushing was high enough during the periods of study to influence the distribution of phytoplankton biomass, bacterial production of biomass and silicate concentrations in the lagoon channel as well as in some of the bay areas.     

新疆博格达南缘后碰撞期陆内裂谷和水下滑塌构造

本文较为系统地研究了哈密市七角井-车轱辘泉和乌鲁木齐市白杨沟地区晚古生代后碰撞期陆内裂谷和滑塌构造的几何学、岩石学和地球化学特征。研究表明,在博格达山南缘的七角井-车轱辘泉一带,玄武岩和流纹岩彼此互层产出,构成厚度较大的后碰撞期双峰式火山岩系,呈近东西方向平行造山带展布,堆积在早二叠世红色磨拉石之上;在白杨沟一带,后碰撞水下滑塌堆积岩与火山岩共存,构成一个厚1300m的滑塌构造剖面,由水下滑塌堆积岩夹双峰式火山岩带、枕状熔岩-气孔状玄武岩带和硅质、泥砂质岩带所组成。其底部以北东走向的拆离断层和晚石炭世灰岩、砂岩岩层接触。在岩石地球化学特征上,火山岩的SiO2含量在53%-67%之间出现间断,呈现双峰式火山岩的特点。其中,流纹岩SiO2平均71.65%,CaO2.15%,Na2O与K2O含量相近(3.2%-3.7%),含碱量>含钙量,ANKC值>1.1;轻稀土富集、稀土总量高,铕亏损,具明显Eu负异常。与之共生的玄武岩则以富硅贫碱为特征,SiO2平均51.05%,TiO2含量变化较大,轻稀土轻度富集,铕异常不明显,属拉斑系列玄武岩类。其特征和东非阿法尔裂谷的双峰式火山岩相近,反映陆内裂谷环境。对滑塌堆积岩带中的辉绿玢岩作锆石U-Pb测年,获289±5Ma年龄值,相当于二叠纪初期。从晚二迭叠世开始,全区处于相对稳定的剥蚀-堆积环境中,形成了厚度较大的磨拉石,并逐渐演化为三叠纪的准平原化环境。     

Continental subduction and exhumation of UHP rocks. Structural and geochronological insights from the Dabieshan (East China)

In the Dabieshan, the available models for exhumation of ultrahigh-pressure (UHP) rocks are poorly constrained by structural data. A comprehensive structural and kinematic map and a general cross-section of the Dabieshan including its foreland fold belt and the Northern Dabieshan Domain (Foziling and Luzenguang groups) are presented here. South Dabieshan consists from bottom to top of stacked allochtons: (1) an amphibolite facies gneissic unit, devoid of UHP rocks, interpreted here as the relative autochton; (2) an UHP allochton; (3) a HP rock unit (Susong group) mostly retrogressed into greenschist facies micaschists; (4) a weakly metamorphosed Proterozoic slate and sandstone unit; and (5) an unmetamorphosed Cambrian to Early Triassic sedimentary sequence unconformably covered by Jurassic sandstone. All these units exhibit a polyphase ductile deformation characterized by (i) a NW–SE lineation with a top-to-the-NW shearing, and (ii) a southward refolding of early ductile fabrics.

The Central Dabieshan is a 100-km scale migmatitic dome. Newly discovered eclogite xenoliths in a Cretaceous granitoid dated at 102 Ma by the U–Pb method on titanite demonstrate that migmatization post-dates HP–UHP metamorphism. Ductile faults formed in the subsolidus state coeval to migmatization allow us to characterize the structural pattern of doming. Along the dome margins, migmatite is gneissified under post-solidus conditions and mylonitic–ultramylonitic fabrics commonly develop. The north and west boundaries of the Central Dabieshan metamorphics, i.e. the Xiaotian–Mozitan and Macheng faults, are ductile normal faults formed before Late Jurassic–Early Cretaceous. A Cretaceous reworking is recorded by synkinematic plutons.

North of the Xiaotian–Mozitan fault, the North Dabieshan Domain consists of metasediments and orthogneiss (Foziling and Luzenguang groups) metamorphosed under greenschist to amphibolite facies which never experienced UHP metamorphism. A rare N–S-trending lineation with top-to-the-south shearing is dated at 260 Ma by the ⁴⁰Ar/³⁹Ar method on muscovite. This early structure related to compressional tectonics is reworked by top-to-the-north extensional shear bands.

The main deformation of the Dabieshan consists of a NW–SE-stretching lineation which wraps around the migmatitic dome but exhibits a consistently top-to-the-NW sense of shear. The Central Dabieshan is interpreted as an extensional migmatitic dome bounded by an arched, top-to-the-NW, detachment fault. This structure may account for a part of the UHP rock exhumation. However, the abundance of amphibolite restites in the Central Dabieshan migmatites and the scarcity of eclogites (found only in a few places) argue for an early stage of exhumation and retrogression of UHP rocks before migmatization. This event is coeval to the N–S extensional structures described in the North Dabieshan Domain. Recent radiometric dates suggest that early exhumation and subsequent migmatization occurred in Triassic–Liassic times. The main foliation is deformed by north-verging recumbent folds coeval to the south-verging folds of the South Dabieshan Domain. An intense Cretaceous magmatism accounts for thermal resetting of most of the ⁴⁰Ar/³⁹Ar dates.

A lithosphere-scale exhumation model, involving continental subduction, synconvergence extension with inversion of southward thrusts into NW-ward normal faults and crustal melting is presented.     

Crystal morphologies in pillow basalts: implications for mid-ocean ridge processes

We present the results of a detailed petrological study of a sparsely phyric basalt (MAPCO CH98-DR11) dredged along the Mid-Atlantic Ridge (30°41′N). The sample contains microphenocrysts of olivine that display four different rapid-growth morphologies. Comparison of these morphologies with those obtained in dynamic crystallization experiments allows us to constrain the thermal history of the sample. The dendritic morphology (swallowtail, chain and lattice olivine) is directly related to the final quenching during magma–seawater interaction. In contrast, the three other morphologies, namely the complex polyhedral crystal, the closed hopper and the complex swallowtail morphology result from several cycles of cooling–heating (corresponding to a maximum degree of undercooling of 20–25°C) during crystal growth. These thermal variations occurred before eruption and are interpreted to be the result of turbulent convection in a small magmatic body beneath the ridge. The results suggest that the Mid-Atlantic Ridge is underlain by a mush zone that releases batches of liquid during tectonic segregation. Aphyric basalts are emitted during eruptions controlled by the tectonic activity, whereas phyric basalts correspond to small fractions of magma from the mush zone mobilized by reinjections of primitive magmas.     

Microtectonic evidence for eastward ductile shear in the Jurassic orogen of SW Japan

Two Jurassic deformation phases are responsible for the thrust and nappe structures in the infrastructure of the outer belt of the Mesozoic chain of SW Japan. The first phase was synmetamorphic, and took place under HP/LT conditions. Microtectonic analysis shows that the penetrative deformation corresponded to a ductile shear directed from W to E, parallel to the stretching and mineral lineation. At the regional scale the first phase corresponded to the obduction of the Greenschist nappes upon the Kurosegawa continent. During the second phase the Greenschist nappes were sliced, leading to an apparent reverse metamorphic zoning. The first phase structures were then locally reworked by folds giving rise to an apparent westwards sense of shear.     

The pre-Cretaceous deep-seated tectonics of the Abukuma massif and its place in the structural framework of Japan

The structures and microstructures of the Takanuki and Hitachi areas in the Abukuma massif, Northeast Japan are described. In the Takanuki area, the basic Gosaisho series thrusts the pelitic Takanuki ones in a HP metamorphic context. The nappe structure is afterwards refolded by a migmatitic dome: the Samegawa dome, in a HT metamorphic context. Microtectonic analysis shows that the nappe was transported from south to north along the stretching lineation. Geometric features suggest that the Samegawa dome was emplaced by diapirism. The role of the thrust surface as an instable interface promoting the doming is emphasized. The Hitachi metamorphic rocks composed of basic schist, limestone and sandstone shist thrust the pelitic rocks of the western Hitachi gneisses. As for the Takanuki area, the thrusting occurred in ductile synmetamorphic conditions with a north or northeastward displacement. Owing to lithologic, petrologic, structural similitudes, the nappe of the Hitachi metamorphic rocks and that of the Gosaisho series are unified into a unique nappe with a northward motion. The emplacement occurred between late Permian and late Cretaceous likely in late Jurassic. The allochthonous units of the Abukuma massif are correlated with the Green Schist nappe described in Southwest Japan, since they are surrounded by the same zones, namely the Tanba zone and the Kurosegawa-Kitakami one. Moreover both in Southwest and Northeast Japan, the emplacement of the Green Schist nappes is due to a shear deformation inducing rotational structures along the stretching lineation indicating the same sense of transport, that is eastward in Southwest Japan and northward in Northeast Japan, owing to the late bending of the Japanese Islands. The late Jurassic nappe structure is obliquely overprinted by a HT metamorphism, Ryoke in Southwest Japan, Abukuma in Northeast Japan, and afterwards cut by late faults as the Median Tectonic Line or the Tanakura fault, giving rise to the present complexity.