Seismic Inference using Genetic Algorithms

A flood of reliable seismic data will soon arrive. The migration to largertelescopes on the ground may free up 4-m class instruments for multi-sitecampaigns, and several forthcoming satellite missions promise to yieldnearly uninterrupted long-term coverage of many pulsating stars. We willthen face the challenge of determining the fundamental properties of thesestars from the data, by trying to match them with the output of ourcomputer models. The traditional approach to this task is to make informedguesses for each of the model parameters, and then adjust them iterativelyuntil an adequate match is found. The trouble is: how do we know that oursolution is unique, or that some other combination of parameters will notdo even better? Computers are now sufficiently powerful and inexpensivethat we can produce large grids of models and simply compare all ofthem to the observations. The question then becomes: what range ofparameters do we want to consider, and how many models do we want tocalculate? This can minimize the subjective nature of the process, but itmay not be the most efficient approach and it may give us a false sense ofsecurity that the final result is correct, when it is really justoptimal. I discuss these issues in the context of recent advances inthe asteroseismological analysis of white dwarf stars.     

The Citation Impact of Digital Preprint Archives for Solar Physics Papers

Papers that are posted to a digital preprint archive are typically cited twice as often as papers that are not posted. This has been demonstrated for papers published in a wide variety of journals, and in many different subfields of astronomy. Most astronomers now use the arXiv.org server (astro-ph) to distribute preprints, but the solar physics community has an independent archive hosted at Montana State University. For several samples of solar physics papers published in 2003, I quantify the boost in citation rates for preprints posted to each of these servers. I show that papers on the MSU archive typically have citation rates 1.7 times higher than the average of similar papers that are not posted as preprints, while those posted to astro-ph get 2.6 times the average. A comparable boost is found for papers published in conference proceedings, suggesting that the higher citation rates are not the result of self-selection of above-average papers. Editors’ Note: This paper lies outside the normal purview of Solar Physics papers, however the editors feel that the content is of sufficient importance for all Solar Physics authors and readers to merit its publication.     

Voracious planktonic hydroids: unexpected predatory impact on a coastal marine ecosystem

Hydroids are typically attached, benthic cnidarians that feed on a variety of small prey. During sampling on Georges Bank in spring 1994, we found huge numbers of hydroids suspended in the plankton. They fed on young stages of copepods that are an important prey for fish, as well as on young fish themselves. Two independent methods were used to estimate feeding rates of the hydroids; both indicate that the hydroids are capable of consuming from 50% to over 100% of the daily production of young copepods. These results suggest that hydroids can have a profound effect on the population dynamics of zooplankton and young fish on Georges Bank.     

Macrobenthic infaunal communities associated with deep‐sea hydrocarbon seeps in the northern Gulf of Mexico

There are thousands of seeps in the deep ocean worldwide; however, many questions remain about their contributions to global biodiversity and the surrounding deep‐sea environment. In addition to being globally distributed, seeps provide several benefits to humans such as unique habitats, organisms with novel genes, and carbon regulation. The purpose of this study is to determine whether there are unique seep macrobenthic assemblages, by comparing seep and nonseep environments, different seep habitats, and seeps at different depths and locations. Infaunal community composition, diversity, and abundance were examined between seep and nonseep background environments and among three seep habitats (i.e., microbial mats, tubeworms, and soft‐bottom seeps). Abundances were higher at seep sites compared to background areas. Abundance and diversity also differed among microbial mat, tubeworm, and soft‐bottom seep habitats. Although seeps contained different macrobenthic assemblages than nonseep areas, infaunal communities were also generally unique for each seep. Variability was 75% greater within communities near seeps compared to communities in background areas. Thus, high variability in community structure characterized seep communities rather than specific taxa. The lack of similarity among seep sites supports the idea that there are no specific infauna that can be used as indicators of seepage throughout the northern Gulf of Mexico, at least at higher taxonomic levels.     

Sediment Suspension and Deposition Across Restored Oyster Reefs of Varying Orientation to Flow: Implications for Restoration

The eastern oyster, Crassostrea virginica, is a prominent ecosystem engineer, whose reefs exhibit strikingly consistent morphologies at multiple spatial scales throughout its North American range. These distinct morphologies are thought to form by interactions of nascent reef structures with hydrodynamics. We carried out two field studies to determine if historical reef configurations applied in a restoration context would improve reef persistence and restoration outcomes. We collected seabed and water column observations across constructed reefs of three orientations representative of those found historically throughout the oyster’s range: parallel or perpendicular to tidal currents or circular. Areas adjacent to reefs were sites of fine sediment trapping, with lower flow velocities, evidence of particle settling, and more fine sediments on the seabed relative to off-reef reference sites. The water column above the reef crest exhibited higher acoustic backscatter, higher flow velocities, and larger particles in suspension, consistent with local erosion of flocculated fine sediment from the reef crest. Perpendicular reefs produced conditions that were more conducive to reef persistence and improved oyster performance, including high flow velocities and enhanced resuspension of sediments from the reef, compared to parallel or circular reefs. Particle trapping in areas between reefs has the potential to inhibit reef growth between existing reef structures, providing support for hypotheses of landscape-scale reef pattern formation. Oyster reef restoration efforts can benefit from this improved understanding of biophysical interactions arising from reef orientation that contribute to sediment dynamics on constructed oyster reefs.     

Nutrient and metal accumulation in a freshwater tidal marsh

Stratigraphic records from sediment cores collected in a freshwater tidal marsh and in the estuary upstream and downstream from the marsh were used to determine the accumulation of nutrients and trace metals over long time periods. Analysis of pollen and seeds show that the high marsh has formed only within the past 100 yr, following increased sedimentation rates in the area. Variations in nutrient and trace metal accumulations over several decades show that pollutants from agricultural runoff and wastewater discharge are stored to a greater extent in high-marsh than in low-marsh sediments. Greater accumulation rates in the high marsh are probably related to its greater sedimentary organic carbon concentration.     

Some Biases in Sampling Multilevel Piezometers for Volatile Organics

Multilevel piezometers are cost-effective monitoring devices for determining the three-dimensional distribution of solutes in ground water. Construction includes flexible tubing (plastic or Teflon®). Their sampling is subject to a number of'potential biases, particularly: (1) losses of volatile organic solutes via volatilization, (2) sorption onto the flexible tubing of the piezometers, (3) leaching of organics from this tubing, and (4) collection of unrepresentative samples due to inadequate piezometer flushing. It is shown that these biases are minimal or are easily controlled in most situations.
Another source of bias has been recognized. Organic solutes present in ground water above the screened level can penetrate the flexible plastic or Teflon tubing and contaminate the sampled water being drawn through this tubing. Laboratory tests and field results indicate this transmission causes low organic contaminant concentrations to be erroneously attributed to ground water which is free of such contaminants. The transmitted organics apparently desorb from the plastic tubing during flushing of even 40 piezometer volumes.
Recognition of this transmission problem provides for a better interpretation of existing organic contaminant distribution data. Caution is advised when considering the use of these monitoring devices in organic solute contaminant studies.     

The potential impact of herbivores on the susceptibility of the marsh plantSagittaria lancifolia to saltwater intrusion in coastal wetlands

The objective of this study was to experimentally evaluate the effects of simulated herbivory on the ability of a freshwater marsh plant to recover from temporary saltwater intrusion such as can be caused by tropical storms. Sods containingSagittaria lancifolia, a dominant plant in interior coastal marshes, were manipulated in the field so as to subject plants to a pulse of 15‰ salt water for a duration of 1 wk. In addition to the exposure to salt water, some plants were also subjected to both short-term and long-term flooding treatments of 20 cm, and to simulated herbivory (clipping). Following exposure to salt water, plants were allowed to recover over the winter and were harvested the next June. Neither simulated herbivory, nor salinity, nor flooding caused any long-term effect either singly or in pairwise combinations. However, when plants were subjected to herbivory, salt water, and flooding simultaneously, reduced growth and plant death occurred. These results suggest that high levels of grazing by herbivores may increase the susceptibility of coastal marsh plants to damage from saltwater intrusion. *** DIRECT SUPPORT *** A01BY073 00002     

Comparison of heat and bromide as ground water tracers near streams

Heat and bromide were compared as tracers for examining stream/ground water exchanges along the middle reaches of the Santa Clara River, California, during a 10-hour surface water sodium bromide injection test. Three cross sections that comprise six shallow (<1 m) piezometers were installed at the upper, middle, and lower sections of a 17 km long study reach, to monitor temperatures and bromide concentrations in the shallow ground water beneath the stream. A heat and ground water transport simulation model and a closely related solute and ground water transport simulation model were matched up for comparison of simulated and observed temperatures and bromide concentrations in the streambed. Vertical, one-dimensional simulations of sediment temperature were fitted to observed temperature results, to yield apparent streambed hydraulic conductivities in each cross section. The temperature-based hydraulic conductivities were assigned to a solute and ground water transport model to predict sediment bromide concentrations, during the sodium bromide injection test. Vertical, one-dimensional simulations of bromide concentrations in the sediments yielded a good match to the observed bromide concentrations, without adjustment of any model parameters except solute dispersivities. This indicates that, for the spatial and temporal scales examined on the Santa Clara River, the use of heat and bromide as tracers provide comparable information with respect to apparent hydraulic conductivities and fluxes for sediments near streams. In other settings, caution should be used due to differences in the nature of conservative (bromide) versus nonconservative (heat) tracers, particularly when preferential flowpaths are present.