Preservation of the shell matrix protein dermatopontin in 1500 year old land snail fossils from the Bonin islands

Organic molecules such as proteins can be preserved in certain fossils. The bulk properties of fossil proteins of both vertebrates and invertebrates have been studied for over half a century. Named proteins have so far been identified, however, only in vertebrate fossils, such as collagen from mammoth bones. Using immunological assays, we examined 1500 year old fossils of the extinct land snail Mandarina luhuana from the Bonin islands for the presence of dermatopontin, a molluscan shell matrix protein. First, we examined the shell microstructure and mineralogy of the fossil shells using scanning electron microscopy (SEM) and powder X-ray diffraction (XRD) in order to estimate the extent of diagenetic alteration. The results suggest that the original microstructure and mineralogy of the shells are preserved. Antiserum raised against the Type-1 dermatopontin fragment of the living land snail Euhadra brandtii showed significant immunological reactivity with the extracts from the fossil shells of M. luhuana. Immunological binding curves drawn for the shell extracts of extant M. aureola and the extinct M. luhuana confirmed the presence of dermatopontin in the fossil shells and provided an estimate that about 75–98% of the original dermatopontin was lost from the M. luhuana fossils. This is the first report of a named protein being identified in invertebrate fossils.     

Temporal behavior of the background seismicity rate in central Japan, 1998 to mid-2003

We studied the temporal behavior of the background shallow seismicity rate in 700 circular areas across inland Japan. To search for and test the significance of the possible rate changes in background seismicity, we developed an efficient computational method that applies the space–time ETAS model proposed by Ogata in 1998 to the areas. Also, we conducted Monte Carlo tests using a simulated catalog to validate the model we applied. Our first finding was that the activation anomalies were found so frequently that the constant background seismicity hypothesis may not be appropriate and/or the triggered event model with constraints on the parameters may not adequately describe the observed seismicity. However, quiescence occasionally occurs merely by chance. Another outcome of our study was that we could automatically find several anomalous background seismicity rate changes associated with the occurrence of large earthquakes. Very significant seismic activation was found before the M6.1 Mt. Iwate earthquake of 1998. Also, possible seismic quiescence was found in an area 150 km southwest of the focal region of the M7.3 Western Tottori earthquake of 2000. The seismicity rate in the area recovered after the mainshock.     

Tropical synoptic-scale wave disturbances over the western Pacific simulated by a global cloud-system resolving model

Lower-tropospheric tropical synoptic-scale disturbances (TSDs) are associated with severe weather systems in the Asian Monsoon region. Therefore, exact prediction of the development and behavior of TSDs using atmospheric general circulation models is expected to improve weather forecasting for this region. Recent state-of-the art global cloud-system resolving modeling approaches using a Nonhydrostatic Icosahedral Atmospheric Model (NICAM) may improve representation of TSDs. This study evaluates TSDs over the western Pacific in output from an Atmospheric Model Intercomparison Project (AMIP)-like control experiment using NICAM. Data analysis compared the simulated and observed fields. NICAM successfully simulates the average activity, three-dimensional structures, and characteristics of the TSDs during the Northern summer. The variance statistics and spectral analysis showed that the average activity of the simulated TSDs over the western Pacific during Northern summer broadly captures that of observations. The composite analysis revealed that the structures of the simulated TSDs resemble the observed TSDs to a large degree. The simulated TSDs exhibited a typical southeast- to northwest-oriented wave-train pattern that propagates northwestward from near the equator around 150 ^° E toward the southern coast of China. However, the location of the simulated wave train and wave activity center was displaced northward by approximately a few degrees of latitude from that in the observation. This displacement can be attributed to the structure and strength of the background basic flow in the simulated fields. Better representation of the background basic states is required for more successful simulation of TSDs.     

2-D transient soil–surface foundation interaction and wave propagation by time domain BEM

This paper shows an effective implementation of the half-plane Green function for surface strip impulses (Lamb's problem), which was previously developed in a closed form by the authors, into the time-domain boundary element method for the analysis of related initial boundary value problems. The time-stepping algorithm utilizing Heaviside step function makes the solution process free from the Rayleigh wave front singularity. Illustrative analyses performed include that: First, the response due to an impulsive uniform strip loading is dealt with in order to check the accuracy of the present solution and to interpret the associated wave motion in the medium. Second, a rigid massless strip surface foundation is analysed when subjected to various impulsive loadings in vertical, horizontal and rotational directions to observe which wave is most concerned with the respective foundation motion. The field response is also of interest with respect to distance attenuation. Third, the dynamic cross-interaction between active and passive foundations through soil is investigated when multiple strip foundations are placed separately on a half-space with a certain distance.     

Seismic-response-controlled structure with active mass driver system. Part 2: Verification

An Active Mass Driver (AMD) system is proposed to suppress actively the response of a building to irregular external excitations such as earthquakes and typhoons.¹ This system has been introduced to an actual ten-storey office building constructed in Tokyo in August, 1989. The proposed analytical methods utilize circuits of the system and mechanical characteristics to understand the real control effect of the system. Simulation analyses are also performed to verify the analytical model and the control effect during observed earthquakes.     

A new fault rupture scenario for the 2003 Mw 6.6 Bam earthquake, SE Iran: Insights from the high-resolution QuickBird imagery and field observations

The December 26, 2003 M_w 6.6 Bam earthquake is one of the most disastrous earthquakes in Iran. QuickBird panchromatic and multispectral satellite imagery with 61 cm and 2.4 m ground resolution, respectively provide new insights into the surface rupturing process associated with this earthquake. The results indicate that this earthquake produced a 2–5 km-wide surface rupture zone with a complex geometric pattern. A 10-km-long surface rupture zone developed along the pre-existing Bam fault trace. Two additional surface rupture zones, each 2–5 km long, are oblique to the pre-existing Bam fault in angles of 20–35°. An analysis of geometric and geomorphic features also shows that movement on the Bam fault is mainly right-lateral motion with some compressional component. This interpretation is consistent with field investigations, analysis of aftershocks as well as teleseismic inversion. Therefore, we suggest that the 2003 Bam earthquake occurred on the Bam fault, and that the surface ruptures oblique to the Bam fault are caused by secondary faulting such as synthetic shears (Reidel shears). Our fault model for the Bam earthquake provides a new tectonic scenario for explaining complex surface deformations associated with the Bam earthquake.     

Sedimentary evolution of the Holocene subaqueous clinoform off the southern Shandong Peninsula in the Western South Yellow Sea

Based on the stratigraphic sequence formed since the last glaciation and revealed by 3000 km long high-resolution shallow seismic profiles and the core QDZ03 acquired recently off the southern Shandong Peninsula, we addressed the sedimentary characteristics of a Holocene subaqueous clinoform in this paper. Integrated analyses were made on the core QDZ03, including sedimentary facies, sediment grain sizes, clay minerals, geochemistry, micro paleontology, and AMS 14 C dating. The result indicates that there exists a Holocene subaqueous clinoform, whose bottom boundary generally lies at 15–40 m below the present sea level with its depth contours roughly parallel to the coast and getting deeper seawards. The maximum thickness of the clinoform is up to 22.5 m on the coast side, and the thickness contours generally spread in a banded way along the coastline and becomes thinner towards the sea. At the mouths of some bays along the coast, the clinoform stretches in the shape of a fan and its thickness is evidently larger than that of the surrounding sediments. This clinoform came into being in the early Holocene(about 11.2 cal kyr BP) and can be divided into the lower and upper depositional units(DU 2 and DU 1, respectively). The unit DU 2, being usually less than 3 m in thickness and formed under a low sedimentation rate, is located between the bottom boundary and the Holocene maximum flooding surface(MFS), and represents the sediment of a post-glacial transgressive systems tract; whereas the unit DU 1, the main body of the clinoform, sits on the MFS, belonging to the sediment of a highstand systems tract from middle Holocene(about 7–6 cal kyr BP) to the present. The provenance of the clinoform differs from that of the typical sediments of the Yellow River and can be considered as the results of the joint contribution from both the Yellow River and the proximal coastal sediments of the Shandong Peninsula, as evidenced by the sediment geochemistry of the core. As is controlled mainly by coactions of multiple factors such as the Holocene sea-level changes, sediment supplies and coastal dynamic conditions, the development of the clinoform is genetically related with the synchronous clinoform or subaqueous deltas around the northeastern Shandong Peninsula and in the northern South Yellow Sea in the spatial distribution and sediment provenance, as previously reported, with all of them being formed from the initial stage of the Holocene up to the present.     

Interannual and seasonal variation of the Huanghe (Yellow River) water discharge over the past 50 years: Connections to impacts from ENSO events and dams

The Huanghe, the second largest river in China, is now under great pressure as a water resource. Using datasets of river water discharge, water consumption and regional precipitation for the past 50 years, we elucidate some connections between decreasing water discharges, global El Niño/Southern Oscillation (ENSO) events and anthropogenic impacts in the drainage basin. Global ENSO events, which directly affected the regional precipitation in the river basin, resulted in approximately 51% decrease in river water discharge to the sea. The degree of anthropogenic impacts on river water discharge is now as great as that of natural influences, accelerating the water losses in the hydrological cycle. The large dams and reservoirs regulated the water discharge and reduced the peak flows by storing the water in the flood season and releasing it in the dry season as needed for agricultural irrigation. Thus, as a result, large dams and reservoirs have shifted the seasonal distribution patterns of water discharge and water consumption and finally resulted in rapidly increasing water consumption. Meanwhile, the annual distribution pattern of water consumption also changed under the regulation of dams and reservoirs, indicating that the people living in the river basin consume the water more and more to suit actual agricultural schedule rather than depending upon natural pattern of annual precipitation. The combination of the increasing water consumption facilitated by the dams and reservoirs and the decreasing precipitation closely associated with the global ENSO events over the past half century has resulted in water scarcity in this world-famous river, as well as in a number of subsequent serious results for the river, delta and coastal ocean.     

Verification of Carbon Sink Assessment: Can We Exclude Natural Sinks?

Any human-induced terrestrial sink is susceptible to the effects of elevated atmospheric CO₂ concentration, nitrogen deposition, climate variability and other natural or indirect human-induced factors. It has been suggested in climate negotiations that the effects of these factors should be excluded from estimates of carbon sequestration used to meet the emission reduction commitments under the Kyoto Protocol. This paper focuses on the methodologies for factoring out the effects of atmospheric and climate variability/change. We estimate the relative magnitude of the non-human induced effects by using two biosphere models and discuss possibilities for narrowing estimate uncertainty.