Carbon biogeochemistry of the Betsiboka estuary (north-western Madagascar)

Madagascar’s largest estuary (Betsiboka) was sampled along the salinity gradient during the dry season to document the distribution and sources of particulate and dissolved organic carbon (POC, DOC) as well as dissolved inorganic carbon (DIC). The Betsiboka was characterized by a relatively high suspended matter load, and in line with this, low DOC/POC ratios (0.4–2.5). The partial pressure of CO₂ (pCO₂) was generally above atmospheric equilibrium (270–1530 ppm), but relatively low in comparison to other tropical and subtropical estuaries, resulting in low average CO₂ emission to the atmosphere (9.1 ± 14.2 mmol m⁻² d⁻¹). Despite the fact that C4 vegetation is reported to cover >80% of the catchment area, stable isotope data on DOC and POC suggest that C4 derived material comprises only 30% of both pools in the freshwater zone, increasing to 60–70% and 50–60%, respectively, in the oligohaline zone due to additional lateral inputs. Sediments from intertidal mangroves in the estuary showed low organic carbon concentrations (<1%) and δ¹³C values (average −19.8‰) consistent with important inputs of riverine imported C4 material. This contribution was reflected in δ¹³C signatures of bacterial phospholipid derived fatty acids (i + a15:0), suggesting the potential importance of terrestrial organic matter sources for mineralization and secondary production in coastal ecosystems.     

Low-oxygen and chemical kinetic constraints on the geochemical niche of neutrophilic iron(II) oxidizing microorganisms

Neutrophilic iron oxidizing bacteria (FeOB) must actively compete with rapid abiotic processes governing Fe(II) oxidation and as a result have adapted to primarily inhabit low-O₂ environments where they can more successfully compete with abiotic Fe(II) oxidation. The spatial distribution of these microorganisms can be observed through the chemical gradients they affect, as measured using in situ voltammetric analysis for dissolved Fe(II), Fe(III), O₂, and FeS_(aq). Field and laboratory determination of the chemical environments inhabited by the FeOB were coupled with detailed kinetic competition studies for abiotic and biotic oxidation processes using a pure culture of FeOB to quantify the geochemical niche these organisms inhabit. In gradient culture tubes, the maximum oxygen levels, which were associated with growth bands of Sideroxydans lithotrophicus (ES-1, a novel FeOB), were 15-50 μM. Kinetic measurements made on S. lithotrophicus compared biotic/abiotic (killed control) Fe oxidation rates. The biotic rate can be a significant and measurable fraction of the total Fe oxidation rate below O₂ concentrations of approximately 50 μM, but biotic Fe(II) oxidation (via the biotic/abiotic rate comparison) becomes difficult to detect at higher O₂ levels. These results are further supported by observations of conditions supporting FeOB communities in field settings. Variablity in cell densities and cellular activity as well as variations in hydrous ferrous oxide mineral quantities significantly affect the laboratory kinetic rates. The microbial habitat (or geochemical niche) where FeOB are active is thus largely controlled by the competition between abiotic and biotic kinetics, which are dependent on Fe(II) concentration, P_O2, temperature and pH in addition to the surface area of hydrous ferric oxide minerals and the cell density/activity of FeOB. Additional field and lab culture observations suggest a potentially important role for the iron-sulfide aqueous molecular cluster, FeS_(aq), in the overall cycling of iron associated with the environments these microorganisms inhabit.     

Isotopic variation of fishes in freshwater and estuarine zones of a large subtropical coastal lagoon

We used stable C and N isotope ratios of tissues from 29 fish species from a large subtropical lagoon in southern Brazil to examine spatial variability in isotopic composition and vertical trophic structure across freshwater and estuarine habitats. Nitrogen isotope ratios indicated a smooth gradation in trophic positions among species, with most fishes occupying the secondary and tertiary consumer level. Fish assemblages showed a significant shift in their carbon isotopic signatures between freshwater and estuarine sites. Depleted carbon signatures (from −24.7‰ to −17.8‰) were found in freshwater, whereas more enriched signatures (from −19.1‰ to −12.3‰) were obtained within the estuarine zone downstream. Based on our survey of the C₃ and C₄ plants and isotopic values for phytoplankton and benthic microalgae reported for ecosystems elsewhere, we hypothesized that the observed δ¹³C differences in the fish assemblage between freshwater and estuarine sites is due to a shift from assimilating organic matter ultimately derived from C₃ freshwater marsh vegetation and phytoplankton at the freshwater site (δ¹³C ranging from −25‰ to −19‰), to C₄ salt-marsh (e.g. Spartina) and widgeon grass (Ruppia maritima), benthic microalgae and marine phytoplankton at the estuarine sites (from −18‰ to −12‰). Our results suggested that fish assemblages are generally supported by autochthonous primary production. Freshwater fishes that likely were displaced downstream into the estuary during periods of high freshwater discharge had depleted δ¹³C values that were characteristic of the upper lagoon. These results suggest that spatial foodweb subsidies can occur within the lagoon.     

Cytochrome P450 differences in normal and imposex-affected female whelk Buccinum undatum from the open North Sea

Normal and imposex-affected female Buccinum undatum were sampled from the open North Sea at three locations, one with low, and two with high shipping densities. Cytochrome P450 components and P450 aromatase activity were determined in the microsomal fractions isolated from pooled digestive gland/gonads. Cytochrome P450 aromatase activity was significantly higher (P < 0.05) in normal females collected in the low shipping density area (1,325 +/- 295 fmol/h/mg protein) than levels from imposex animals from a high shipping density area (620 +/- 287 fmol/h/mg protein). A negative correlation was found between aromatase activity and organotin body burden (r = -0.99). Levels of CYP450, cytochrome b5 and NADPH cytochrome c reductase activity did not show differences among groups. This is the first field evidence of depressed aromatase activity in imposex affected females, although additional research under laboratory controlled conditions is required to fully understand the mechanisms underlying the development of imposex in this species.     

Microphytobenthos vertical migratory photoresponse as characterised by light-response curves of surface biomass

The migratory response of intertidal microphytobenthos to changes in irradiance was studied on undisturbed estuarine sediments. Two non-destructive optical techniques were used to trace variations in vivo of surface biomass: PAM fluorometry, for measuring the minimum fluorescence level (F_o); and spectral reflectance analysis, for quantifying the normalized difference vegetation index (NDVI). Following the formation of a dense biofilm at the surface, replicated sediment samples were simultaneously exposed to six different irradiance levels, ranging from 50 to 1500 μmol m⁻² s⁻¹, during a period of 120 min. The migratory photoresponse of the biofilms was characterised by constructing biomass vs. light curves (BLC), relating the accumulation of microalgal biomass after that period (estimated by F_o or NDVI) to the irradiance level incident on the surface. BLCs allow characterising the main features of the migratory photoresponse of intact biofilms. Typical BLC showed a clear biphasic pattern, with an increase in microalgal accumulation under irradiances below 100 μmol m⁻² s⁻¹, maximum values under 100–250 μmol m⁻² s⁻¹, and a gradual decrease of surface biomass under higher irradiances, indicating a strong photophobic downward migratory response. Similar BLC patterns were obtained when measuring F_o or NDVI. The construction of BLCs for biofilms from intertidal sites with distinctive sediment characteristics and diatom taxonomic composition allowed to detected significant differences in the migratory photoresponse. Biofilms from a muddy sediment exhibited considerably larger amplitude in the migratory photoresponse than the biofilms from a sandy mud site, especially under high irradiances. The photophobic migratory response to high light was found to vary among diatom species, particularly in the case of the biofilms from the muddy sediments.     

Measuring lysosomal stability as an effective tool for marine coastal environmental monitoring

The use of lysosomal stability in the mussel, Mytilus galloprovincialis, as a potential biomarker of environmental contamination has been evaluated along the Portuguese coast. To this end, the neutral red retention (NRR) time was measured in mussel haemocytes gathered from nine different locations reflecting different degrees of anthropogenic contamination. Mussels collected in the vicinity of industrial and urban areas showed the lowest lysosomal stability. Additionally, no significant seasonal variability (winter-spring/summer) for NRR time was observed. In order to further support the usefulness of this method as an integrated tool for monitoring marine coastal environments, we compared the levels of xenobiotics in mussel tissues with the obtained NRR values. The results highlighted a consistent pattern, with the lowest lysosomal stability intimately correlated with the higher contaminant concentrations. In summary, this integrated approach further demonstrated that the NRR assay can provide useful and objective indications of the real health status of organisms subjected to different stress agents, being a valid option for environmental monitoring.     

Influence of initial plastic anisotropy of overconsolidated clays on ground behaviour during tunneling

In order to evaluate the influence of the initial plastic anisotropy in the excavation of a tunnel, a “bubble” bounding surface model for structured soils, formulated by Kavvadas and Belokas (Proc. 10th IACMAG Conf., 2001), was implemented in the explicit finite difference code FLAC. Two different initial stress (K ₀) conditions were considered. The size and shape of the initial bounding surfaces were specified to be consistent with the initial stress field. The distorted and rotated shape of the bounding surface, supported by experimental results, defines the anisotropy of shear strength, which is shown to have a significant influence on the displacements. There is also considerable sensitivity of the soil model to the initial stress field.     

Fluctuation in the zooplankton community in two solar salt ponds,Aveiro, Portugal

The zooplankton of two salt ponds at Aveiro was studied to evaluate its density and diversity. Samples were collected biweekly from the salt ponds Esmolas and Tanoeiras. Samples were first separated into Holoplankton (Copepoda, nauplii,Acartia, Ostracoda and Anostraca) and Meroplankton (Mollusca, Insecta, annelidan larvae and Ichthyoplankton). The Holoplankton was mainly composed of:Acartia tonsa, Acartia sp.,Eurytemora velox, Artemia sp., and harpacticoids and calanoids. In both salt ponds, species diversity was identical, but total zooplankton density was higher in the Tanoeiras salt pond, probably because its physical and chemical characteristics allowed the development of stable communities.     

Effect of scallop shells and sediment grain size on phytoplankton flux to the bed

A flume study was made of bed skin friction and phytoplankton (Thalassiosira weissf ogii) deposition about a sea scallop (Placopecten magellanicus) mimic on a coarse (mean grain dia. =1200 μm), medium (615 μm) and fine (170 μm) quarry sand. Bed skin friction immediately upstream, and at one shell diameter downstream of the mimic was 1.2–2.4 times higher than ambient values (8.1 × 10⁻² Pa). Directly downstream of the mimic there was a region of near-zero skin friction. Bed diatom density was correlated with changes in skin friction; after 21 h, cell densities were 36–87% greater in the regions of high skin friction upstream and downstream of scallop than in control experiments. The pattern of bed diatom density about the scallop was similar in the coarse and medium sands, but deposition to the fine bed was not affected by the mimic. Diatom density was significantly correlated with grain diameter; deposition in the coarse bed was 2.3 times higher than in the medium sand, and 7.4 times higher than in the fine sand. A field experiment confirmed that the coarse sand was a greater sink of phytoplankton pigment than the fine sand. Previous studies and scaling arguments suggest that the differences in bed diatom density were controlled by the magnitude of interfacial solute fluxes. Regions of high skin friction about the mimic increased the porewater exchange, resulting in greater concentrations of diatoms retained within the bed. Similarly, the more permeable coarse sand would have a greater rate of porewater exchange than the fine sand, explaining the higher bed diatom density. Differences in the predicted volume of interstitial void space as a function of grain size closely matched the observed differences in bed diatom density. Results suggest that alteration of boundary layer flows by centimetre scale topography such as scallops, increases the flux of particulate organic matter toward the bed, but whether it is retained within the bed, and thus made available to the benthos is dependent on the sediment granularity.     

Weathering: Toward a Fractal Quantifying

Weathering occurs over a wide range of scales. To link features through these scales is a major challenge for interdisciplinary weathering studies. Fractal approach seems to be specially useful for this purpose. We introduce a multistep fractal weathering assessment scheme devoted to extract fractal weathering classifiers from texture analysis of the mineral's image. Our scheme enables to quantitatively estimate the global and local information about the geometry of the weathering pattern. This information is basic to develop geometrical indices of weathering, which can significantly enrich the common qualitative and semiquantitative weathering assessment schemes. To justify the fractal approach, a strong statistical self-similarity has been documented for both the weathering and fresh features of two common silica minerals: quartz and biogenic A-opal (phytolith) over four orders of length scales. The procedure is fast, drastically reduces thresholding bias, promises to be universal, it is valid for genetically different minerals and rock types, scale independent, and specially useful for monitoring the changes in the mineral's roughness during the alteration. Two of the proposed classifiers seem to be potentially useful for direct application in the field and be used by nonspecialist.