Carbon fluxes through major phytoplankton groups during the spring bloom and post-bloom in the Northwestern Mediterranean Sea

The carbon flux through major phytoplankton groups, defined by their pigment markers, was estimated in two contrasting conditions of the Northwestern Mediterranean open ocean ecosystem: the spring bloom and post-bloom situations (hereafter Bloom and Post-bloom, respectively). During Bloom, surface chlorophyll a (Chl a) concentration was higher and dominated by diatoms (53% of Chl a), while during Post-bloom Synechococcus (42%) and Prymnesiophyceae (29%) became dominant. The seawater dilution technique, coupled to high pressure liquid chromatography (HPLC) analysis of pigments and flow cytometry (FCM), was used to estimate growth and grazing rates of major phytoplankton groups in surface waters. Estimated growth rates were corrected for photoacclimation based on FCM-detected changes in red fluorescence per cell. Given the 30% average decrease in the pigment content per cell between the beginning and the end of the incubations, overlooking photoacclimation would have resulted in a 0.40 d^?1 underestimation of phytoplankton growth rates. Corrected average growth rates (μ_o) were 0.90±0.20 (SD) and 0.40±0.14 d^?1 for Bloom and Post-bloom phytoplankton, respectively. Diatoms, Cryptophyceae and Synechococcus were identified as fast-growing groups and Prymnesiophyceae and Prasinophyceae as slow-growing groups across Bloom and Post-bloom conditions. The higher growth rate during Bloom was due to dominance of phytoplankton groups with higher growth rates than those dominating in Post-bloom. Average grazing rates (m) were 0.58±0.20 d^?1 (SD) and 0.31±0.07 d^?1. The proportion of phytoplankton growth consumed by microzooplankton grazing (m/μ_o) tended to be lower in Bloom (0.69±0.34) than in Post-bloom (0.80±0.08). The intensity of nutrient limitation experienced by phytoplankton indicated by μ_o/μ_n (where μ_n is the nutrient-amended growth rate), was similar during Bloom (0.78) and Post-bloom (0.73). Primary production from surface water (PP) was estimated with ¹⁴C incubations. A combination of PP and Chl a synthesis rate yielded C/Chl a ratios of 34±21 and 168±75 (g:g) for Bloom and Post-bloom, respectively. Transformation of group-specific Chl a fluxes into carbon equivalents confirmed the dominant role of diatoms during Bloom and Synechococcus and Prymnesiophyceae during Post-bloom.     

Pulsating subsidence during a rift episode: stratigraphic and tectonic consequences (Aptian–Albian, northern Spain)

Backstripping analysis has been carried out on nine outcrop sections of the Basque-Cantabrian Aptian and Albian of northern Spain which consist of shallow-water marine deposits up to 7000 m thick. It reveals four main pulses of common accelerated subsidence: I (Early Aptian), II (Early Albian), III (lower Late Albian), and IV (uppermost Late Albian) separated by tectonic quiescent intervals. Tectonic subsidence rates of 70 m Myr^–1 for the Aptian and 101 m Myr^–1 for the Albian were recorded (Sopuerta section). The calculated stretching factor referred to a pre-rift continental crust of 35 km is (β_s=1.32) and represents approximately 8.5 km of crustal thinning. Points of change towards lesser subsidence rate in the curves are correlated with major unconformities in the sections, in the Basque-Cantabrian Basin and in Boreal Europe, suggesting geodynamic changes related with the opening of Bay of Biscay. Minor variations of spreading direction and intensity are proposed to explain the subsidence pulses.     

Tuning the second-generation SDI: theoretical aspects and real use cases

Spatial data infrastructure (SDI) actors have great expectations for the second-generation SDI currently under development. However, SDIs have many implementation problems at different levels that are delaying the development of the SDI framework. The aims of this article are to identify these difficulties, in the literature and based on our own experience, in order to determine how mature and useful the current SDI phenomena are. We can then determine whether a general reconceptualization is necessary or rather a set of technical improvements and good practices needs to be developed before the second-generation SDI is completed. This study is based on the following aspects: metadata about data and services, data models, data download, data and processing services, data portrayal and symbolization, and mass market aspects. This work aims to find an equilibrium between user-focused geoportals and web service interconnection (the user side vs. the server side). These deep reflections are motivated by a use case in the healthcare area in which we employed the Catalan regional SDI. The use case shows that even one of the best regional SDI implementations can fail to provide the required information and processes even when the required data exist. Several previous studies recognize the value of applying Web 2.0 and user participation approaches but few of these studies provide a real implementation. Another objective of this work is to show that it is easy to complement the classical, international standard-based SDI with a participative Web 2.0 approach. To do so, we present a mash-up portal built on top of the Catalan SDI catalogues.     

Effects of lossy compression on remote sensing image classification of forest areas

Lossy compression is being increasingly used in remote sensing; however, its effects on classification have scarcely been studied. This paper studies the implications of JPEG (JPG) and JPEG 2000 (J2K) lossy compression for image classification of forests in Mediterranean areas. Results explore the impact of the compression on the images themselves as well as on the obtained classification. The results indicate that classifications made with previously compressed radiometrically corrected images and topoclimatic variables are not negatively affected by compression, even at quite high compression ratios. Indeed, JPG compression can be applied to images at a compression ratio (CR, ratio between the size of the original file and the size of the compressed file) of 10:1 or even 20:1 (for both JPG and J2K). Nevertheless, the fragmentation of the study area must be taken into account: in less fragmented zones, high CR are possible for both JPG and J2K, but in fragmented zones, JPG is not advisable, and when J2K is used, only a medium CR is recommended (3.33:1 to 5:1). Taking into account that J2K produces fewer artefacts at higher CR, the study not only contributes with optimum CR recommendations, but also found that the J2K compression standard (ISO 15444-1) is better than the JPG (ISO 10918-1) when applied to image classification. Although J2K is computationally more expensive, this is no longer a critical issue with current computer technology.     

Response of single benthic metrics and multi-metric methods to anthropogenic pressure gradients, in five distinct European coastal and transitional ecosystems

In recent times many benthic indices have been proposed to assess the ecological quality of marine waters worldwide. In this study we compared single metrics and multi-metric methods to assess coastal and transitional benthic status along human pressure gradients in five distinct environments across Europe: Varna bay and lake (Bulgaria), Lesina lagoon (Italy), Mondego estuary (Portugal), Basque coast (Spain) and Oslofjord (Norway). Hence, 13 single metrics (abundance, number of taxa, and several diversity and sensitivity indices) and eight of the most common indices used within the European Water Framework Directive (WFD) for benthic assessment were selected: index of size spectra (ISS), Benthic assessment tool (BAT), Norwegian quality index (NQI), Multivariate AMBI (M-AMBI), Benthic quality index (BQI), (Benthic ecosystem quality index (BEQI), Benthic index based on taxonomic sufficiency (BITS), and infaunal quality index (IQI). Within each system, sampling sites were ordered in an increasing pressure gradient according to a preliminary classification based on professional judgement. The different indices are largely consistent in their response to pressure gradient, except in some particular cases (i.e. BITS, in all cases, or ISS when a low number of individuals is present). Inconsistencies between indicator responses were most pronounced in transitional waters (i.e. IQI, BEQI), highlighting the difficulties of the generic application of indicators to all marine, estuarine and lagoonal environments. However, some of the single (i.e. ecological groups approach, diversity, richness) and multi-metric methods (i.e. BAT, M-AMBI, NQI) were able to detect such gradients both in transitional and coastal environments, being these multi-metric methods more consistent in the detection than single indices. This study highlights the importance of survey design and good reference conditions for some indicators. The agreement observed between different methodologies and their ability to detect quality trends across distinct environments constitutes a promising result for the implementation of the WFD’s monitoring plans. Moreover, these results have management implications, regarding the dangers of misclassification, uncertainty in the assessment, use of conflicting indices, and testing and validation of indices.     

Growth and grazing rate dynamics of major phytoplankton groups in an oligotrophic coastal site

There has been more attention to phytoplankton dynamics in nutrient-rich waters than in oligotrophic ones thus requiring the need to study the dynamics and responses in oligotrophic waters. Accordingly, phytoplankton community in Blanes Bay was overall dominated by Prymnesiophyceae, remarkably constant throughout the year (31 ± 13% Total chlorophyll a, Tchl a) and Bacillariophyta with a more episodic appearance (20 ± 23% Tchl a). Prasinophyceae and Synechococcus contribution became substantial in winter (Prasinophyceae = 30% Tchl a) and summer (Synechococcus = 35% Tchl a). Phytoplankton growth and grazing mortality rates for major groups were estimated by dilution experiments in combination with high pressure liquid chromatography and flow cytometry carried out monthly over two years. Growth rates of total phytoplankton (range = 0.30–1.91 d⁻¹) were significantly higher in spring and summer (μ > 1.3 d⁻¹) than in autumn and winter (μ ∼ 0.65 d⁻¹) and showed a weak dependence on temperature but a significant positive correlation with day length. Microzooplankton grazing (range = 0.03–1.4 d⁻¹) was closely coupled to phytoplankton growth. Grazing represented the main process for loss of phytoplankton, removing 60 ± 34% (±SD) of daily primary production and 70 ± 48% of Tchl a stock. Chla synthesis was highest during the Bacillarophyceae-dominated spring bloom (Chl a_synt = 2.3 ± 1.6 μg Chl a L⁻¹ d⁻¹) and lowest during the following post-bloom conditions dominated by Prymnesiophyceae (Chl a_synt = 0.23 ± 0.08 μg Chl a L⁻¹ d⁻¹). This variability was smoothed when expressed in carbon equivalents mainly due to the opposite dynamics of C:chl a (range = 11–135) and chl a concentration (range = 0.07–2.0 μg chl a L⁻¹). Bacillariophyta and Synechococcus contribution to C fluxes was higher than to biomass because of their fast-growth rate. The opposite was true for Prymnesiophyceae.     

Can light intensity cause shifts in natural product and bacterial profiles of the sponge Aplysina aerophoba?

The potential role of microbial consortia on sponge chemistry is well known. However, how environmental factors affect microbial and chemical profiles and how these shifts affect the sponge holobiont are far from being understood. This study experimentally investigated the effect of light on both the concentration of secondary metabolites and the bacterial assemblages of the sponge Aplysina aerophoba. We quantified major brominated alkaloids (BAs) using a high‐performance liquid chromatography system coupled with a UV‐detector and analysed sponge‐associated bacteria using denaturing gradient gel electrophoresis of 16S rRNA gene amplicons. We identified distinct chemical and bacterial profiles between the ectosome and the choanosome of A. aerophoba. The abundance of most secondary metabolites increased regardless of the illumination regime. We found that the probability of occurrence of three microbial phylotypes (operational taxonomic units 84, 86 and 87) was strongly associated with increasing concentrations of three brominated compounds (aerophobin‐1, aplysinamisin‐1 and isofistularin‐3). Although the role of these bacteria remains uninvestigated, these associations between natural products and specific microbial phylotypes outline further hypotheses that will improve our understanding of the organization and functioning of these complex host–symbiont interactions.     

HPLC analysis of algal pigments: a comparison exercise among laboratories and recommendations for improved analytical performance

Pure individual and mixed pigment standards were distributed among Joint Global Ocean Flux Study (JGOFS) pigment analysts to estimate the variability of their spectrophotometric and chromatographic systems. To monitor the integrity of the pigments during the comparison exercise, chlorophyll and carotenoid standards were archived and periodically analyzed by high-performance liquid chromatography (HPLC). Pigment standards stored in the dark under nitrogen at − 20 °C were found to be stable for periods of at least one year. Results from three separate intercalibration exercises document a better agreement for spectrophotometric analyses than for HPLC. For the spectrophotometric comparisons, 90% of the pigments analyzed by participant laboratories were within ± 6% of the mean “consensus” values. By contrast, 65 and 85% of the laboratories agreed to within ± 10 and ± 20%, respectively, when chromatographic analyses were compared. Chlorophyll absorption measurements obtained with a diode array-type spectrophotometer were 6–9% lower than those obtained with monochromator-type spectrophotometers. These underestimates probably result from chlorophyll fluorescence contamination associated with the optical configuration of the diode array spectrophotometer. It was also determined that HPLC methods which are not capable of separating monovinyl chlorophyll a from divinyl chlorophyll a can produce 15–25% overestimates of total chlorophyll a concentration in Prochlorococcus-dominated oceanic waters. A simple dichromatic approach is described for eliminating this variable source of error caused by co-elution of these structurally-related pigments. The use of internal standards and periodic calibration checks with external standards is highly recommended for improving analytical performance.     

Water Flow, Trophic Depletion, and Benthic Macrofauna Impoverishment in a Submarine Cave from the Western Mediterranean

Abstract. Biotic zonation and severe impoverishment of benthic macrofauna are two of the most conspicuous features of submarine caves. The prevailing explanation assumes trophic depletion caused by reduction of water flow. However, no isolation of water was found in the studied Catalan submarine cave, even in the wall microlayer. Fluorescein diffusion was so fast that it was detectable everywhere in the cave already only a few minutes after the injection. The rate of dissolution of plaster spheres was even greater in the cave than in a nearby tunnel – without benthic macrofauna impoverishment – showing a considerable water flow. The oxygen concentration of water in dialysis bags placed at varying distances from the cave walls showed that no wall microlayer gradients were present.
Biochemical gradients did not indicate any decrease in food supply. Although photosynthetic pigment concentration generally decreased inside the cave, and although the gradients were not linear but formed different patterns throughout the cave, the BOD₅, the POM, the C:N ratio, the [³H]-thymidine incorporation rate, and the ETS activity were higher in the inner part of the cave. There was an accumulation of detritic material and bacteria in the inner parts that constitute a plausible food supply for benthic macrofauna.
If neither water motion nor food supply can be invoked, research into the causes of zonation and disappearence of benthic macrofauna is proposed to be carried out on biotic interactions and behavioural processes.