Sharks caught in the KwaZulu-Natal bather protection programme,South Africa. 14. The smooth hammerhead shark Sphyrna zygaena (Linnaeus)

The current study provides long-term catch-rate, biological and feeding data for smooth hammerhead sharks, Sphyrna zygaena, caught in South Africa’s KwaZulu-Natal bather protection programme. In total, 2 512 S. zygaena were caught in net installations between 1978 and 2014, and 72 S. zygaena were caught on drumlines between 2007 and 2014. There was no significant log-linear year trend in the net catch rate over time (slope = 0.0054, t = 1.808, p = 0.07). However, there was a significant temporal increase in mean size of the captured sharks (slope = 0.0012, t = 3.502, p < 0.001). A quasi-Poisson generalised additive mixed model showed that increasing latitude, winter months, colder sea temperatures and the deployment of drumlines all had a significant positive effect on the catch rate of sharks in nets. The size frequency of the catch was unimodal, with significantly more females caught in the nets and more males on the drumlines. The majority (93.1%) of all sharks caught were immature and measured between 80 and 120 cm precaudal length. Teleosts and cephalopods dominated the sharks’ diet in terms of all dietary indices. The prey species consumed indicate that immature S. zygaena are feeding primarily within the pelagic zone of shallow coastal habitats.     

Structure and dynamics of demersal fish assemblages over three decades (1985–2012) of increasing fishing pressure in Guinea

In a context of growing fishing pressures and recommendations for an ecosystem approach to fisheries, there is a need to monitor changes in fish communities over time. In this study, we analysed data from scientific trawl surveys carried out on the continental shelf off Guinea between 1985 and 2012. We performed factorial analyses and calculated biodiversity indices to characterise the changes in the structure and composition of fish communities that occurred over the 28-year period in this area, particularly given intensive fishing activities. We show that, over the study period, fish communities on the Guinean shelf were structured primarily according to spatial factors, with temporal changes being less pronounced than expected. However, a temporal analysis of biodiversity indices and species dominance showed that the intensification of fishing had significant effects on the general ecological features of the fish assemblages under study. There was a decrease in fish density and in mean trophic level. In addition, there were changes in species dominance, whereby large, slow-growing species with high commercial value were gradually replaced by smaller, fast-growing species of lesser commercial interest. These results from field observations are in line with some conclusions from previous modelling studies in the same geographical area, and provide further support for the hypothesis of a progressive ‘ecosystem effect of fishing’ occurring in Guinean waters.     

Genomic resources for the spotted ragged-tooth shark Carcharias taurus

Genomic data can be a useful tool in the management and conservation of biodiversity. Here, we report the development of genomic resources for the spotted ragged-tooth shark Carcharias taurus using genome-wide DNA data from Illumina next-generation sequencing. We explored two commonly used genetic marker types: microsatellites and mitochondrial DNA. A total of 4 394 putative microsatellites were identified, of which 10 were tested on 24 individuals and found to have ideal properties for population genetic analyses. Additionally, we reconstructed the first complete mitochondrial genome of a South African spotted ragged-tooth shark, and highlight the most informative gene regions to facilitate future primer design. The data reported here may serve as a resource for future studies and can ultimately be applied in the sustainable conservation and fisheries management of this apex predator.     

Diets of alpine galaxias (Galaxias paucispondylus Stokell) and longjawed galaxias (G. prognathus Stokell) in a South Island,New Zealand,high‐country stream

Thedietsofthealpinegalaxias(Galaxias paucispondylus Stokell, 1938) and the longjawed galaxias (G. prognathus Stokell, 1940) were studied in Deep Creek, a high‐country stream in the central South Island of New Zealand. Both species are small, slender fish with entirely freshwater life cycles. Their diets were very similar and consisted of aquatic invertebrates, dominated by the larvae of Deleatidium spp. (Ephemeroptera), Hydrobiosis spp. (Trichoptera), and Chironomidae (Diptera). Although diets partly reflected what was available in the stream, both fish selected soft‐bodied prey in preference to cased or harder shelled prey. Both species are probably nocturnal feeders.     

A workflow for exploration sampling in regolith-dominated terranes using portable X-ray fluorescence: comparison with laboratory data and a case study

This paper presents and validates a workflow that provides for the rapid collection of reliable and robust portable X-ray fluorescence (pXRF) data in a regolith-dominated exploration setting. The analysis of regolith material by pXRF is challenging because of its variable Fe content (e.g. 0 to >70 wt%) that results in large matrix effects, which can be mitigated with appropriate standards. Here, we present a dataset from the Western Mount Isa Inlier, Queensland, Australia, comprising soil, lag, rock and rotary air blast (RAB) samples. In the soil dataset, comparison of the laboratory and pXRF datasets for Cu, Pb and Zn have R² > 0.9, and Cu and Zn fall within 2% of the laboratory data, while Pb is 77% less than the corresponding laboratory analyses. Iron, Al, K and Ca by pXRF perform reasonably well when compared with the laboratory data (R² = 0.59 for Al, R² > 0.9 for Fe, K and Ca, <25% variation from the laboratory data), while Mn, Rb and Sr have very good correlations (<8% variation) with R² > 0.94. Titanium, Zr, Ni, Cr and As have poorer comparisons. Overall, the RAB dataset shows similar trends with Cu overestimated by 17%, Zn underestimated by 4% and Pb overestimated by 69%; R² for all elements is >0.92. Since no suitable standards are available, the solid rock dataset was uncorrected; despite this limitation, the dataset shows good correlations with the laboratory data for many elements, and Cu is overestimated by 9.8% with an R² = 0.87. The poor analytical performance of Pb in all datasets is associated with erroneous Bi concentrations being reported by the pXRF unit. When high Fe and Pb amounts are present in a sample, erroneous Pb and Bi concentrations are reported, owing to a pile-up of the Fe K_α peak (6.405 keV) at ～12.8 keV, which is proximal to the Pb L_β (12.614 keV) and Bi L_β (13.023 keV) peaks. Despite the care that is required in validating data, by using pXRF there is substantial opportunity for dynamic exploration campaigns in regolith-dominated terranes with rapid turnaround times, additional elements that may not otherwise be analysed for and low analytical costs. Decisions to stop, continue or infill drill holes while the drill rig is present can be made in near-real time, and not after laboratory results are available and the drill rig has left the area.