The Meiobenthos Along a Mediterranean Deep-Sea Transect off Calvi (Corsica) and in an Adjacent Canyon

Abstract. Meiobenthos densities (excluding hard-shcllcd foraminifcrans) were compared along a Mediterranean deep-sea transect off Calvi (Corsica) and in an adjacent canyon. Chloroplastic Pigment Equivalent values (CPE) provided an estimate of the amount of primary production reaching the bottom.
The stations along the transect were characterized by a low CPE content of the sediment, decreasing with increasing station depth. CPE values in the canyon were much higher, which probably resulted from import of material from the adjacent bay of Calvi. Similarly, meiobenthos densities along the transect were much lower than at comparable depths along the canyon.
Meiobenthos density was significantly and positively correlated with CPE values.
Nematodes were the most abundant taxon at all stations, followed by copepods + nauplii and the soft-shelled foraminiferans. The meiobenthos was most abundant in the upper half centimeter. Nematode and foraminiferan densities tended to decline less rapidly with increasing depth into the sediment. Specimens belonging to the recently described phylum Loricifera, larvae of the parasitic crustacean class Tantulocarida, and fragments of an infaunal Xenophyophoria (large protozoans) are reported for the first time from the Mediterranean.     

Respiration partitioning in contrasting subtidal sediments: seasonality and response to a spring phytoplankton deposition

Biomass and respiration rates of bacteria, nematodes and macrobenthos were estimated in relation to the deposition of the spring phytoplankton bloom at two contrasting sites in the Southern North Sea: one with fine‐grained sediment close to the coastline and another with highly permeable sediments. Sediment community oxygen consumption (SCOC) was also measured. Bacterial biomass was relatively similar at both stations, whereas nematode and macrobenthic biomass were higher in fine‐grained sediment. In fine sediments, bacterial biomass increased quickly after deposition of the phytoplankton bloom, whereas the response of nematodes and macrobenthos was delayed. In coarser sediments, nematodes and macrobenthos also showed a fast response in terms of density and biomass. Respiration in permeable sediments was mainly dominated by bacteria at all periods of the year. Hence, nematode and macrobenthic respiration did not contribute strongly to SCOC. This is in contrast to the patterns observed in finer sediments, where both macrofauna and nematodes were important oxygen consumers as well. Macrobenthos contributed more to total SCOC than did nematodes in winter. However, shortly after the arrival of phytodetritus at the sea floor, nematodes and macrobenthos contributed equally to the total SCOC, indicating that all benthic size classes should be taken into account when investigating marine benthic respiration rates.     

AquaEnv: An Aquatic Acid–Base Modelling Environment in R

AquaEnv is an integrated software package for aquatic chemical model generation focused on ocean acidification and antropogenic CO₂ uptake. However, the package is not restricted to the carbon cycle or the oceans: it calculates, converts, and visualizes information necessary to describe pH, related CO₂ air–water exchange, as well as aquatic acid–base chemistry in general for marine, estuarine or freshwater systems. Due to the fact that it includes the relevant acid–base systems, it can also be applied to pore water systems and anoxic waters. AquaEnv is implemented in the open source programming language R , which allows for a flexible and versatile application: AquaEnv ’s functionality can be used stand-alone as well as seamlessly integrated into reactive-transport models in the R modelling environment. Additionally, AquaEnv provides a routine to simulate and investigate titrations of water samples with a strong acid or base, as well as a routine that allows for a determination of total alkalinity and total carbonate values from recorded titration curves using non-linear curve-fitting.     

Carbon flows in the benthic food web at the deep-sea observatory HAUSGARTEN (Fram Strait)

The HAUSGARTEN observatory is located in the eastern Fram Strait (Arctic Ocean) and used as long-term monitoring site to follow changes in the Arctic benthic ecosystem. Linear inverse modelling was applied to decipher carbon flows among the compartments of the benthic food web at the central HAUSGARTEN station (2500 m) based on an empirical data set consisting of data on biomass, prokaryote production, total carbon deposition and community respiration. The model resolved 99 carbon flows among 4 abiotic and 10 biotic compartments, ranging from prokaryotes up to megafauna. Total carbon input was 3.78±0.31 mmol C m⁻² d⁻¹, which is a comparatively small fraction of total primary production in the area. The community respiration of 3.26±0.20 mmol C m⁻² d⁻¹ is dominated by prokaryotes (93%) and has lower contributions from surface-deposit feeding macro- (1.7%) and suspension feeding megafauna (1.9%), whereas contributions from nematode and other macro- and megabenthic compartments were limited to <1%. The high prokaryotic contribution to carbon processing suggests that functioning of the benthic food web at the central HAUSGARTEN station is comparable to abyssal plain sediments that are characterised by strong energy limitation. Faunal diet compositions suggest that labile detritus is important for deposit-feeding nematodes (24% of their diet) and surface-deposit feeding macrofauna (∼44%), but that semi-labile detritus is more important in the diets of deposit-feeding macro- and megafauna. Dependency indices on these food sources were also calculated as these integrate direct (i.e. direct grazing and predator–prey interactions) and indirect (i.e. longer loops in the food web) pathways in the food web. Projected sea-ice retreats for the Arctic Ocean typically anticipate a decrease in the labile detritus flux to the already food-limited benthic food web. The dependency indices indicate that faunal compartments depend similarly on labile and semi-labile detritus, which suggests that the benthic biota may be more sensitive to changes in labile detritus inputs than when assessed from diet composition alone. Species-specific responses to different types of labile detritus inputs, e.g. pelagic algae versus sympagic algae, however, are presently unknown and are needed to assess the vulnerability of individual components of the benthic food web.     

Changes in structural and functional diversity of nematode communities during a spring phytoplankton bloom in the southern North Sea

The response of nematode communities to the sedimentation of a spring phytoplankton bloom in a sandy, well-oxygenated sediment at a single station (station 330) in the Southern North Sea was investigated monthly from early March to July 1999. Both structural (nematode density, diversity, vertical distribution and community composition) and functional (feeding type distributions, number of species within feeding groups) characteristics showed considerable changes shortly after the arrival of fresh organic material at the sediment surface. The general increase in numerical densities and diversity was related to changes within the groups of selective deposit-feeding and epistrate-feeding nematodes. It is hypothesised that sedimentation and subsequent remineralisation of fresh organic matter during the spring phytoplankton bloom result in an increase of suitable food items (both living and dead). This, combined with the availability of oxygen, creates conditions in which many nematode species can co-exist.     

On the oxidation and burial of organic carbon in sediments of the Iberian margin and Nazaré Canyon (NE Atlantic)

As a contribution to the EC-OMEX-II program, sediment carbon and nitrogen budgets are presented for the Iberian Margin (northeastern Atlantic). The budgets for degradable organic carbon and associated nitrogen were calculated from sediment and pore water properties, using a steady-state version of a numerical coupled diagenetic model, OMEXDIA. Data were collected throughout the major upwelling period along five transects, four of which were located on the open margin and one positioned in a major submarine canyon, the Nazaré Canyon.A comparison of in situ oxygen profiles measured with monocathodic microelectrodes and with Clark type microelectrodes showed that monocathodic electrodes overestimate the oxygen concentration gradient near the sediment–water interface. This artifact probably results from the loss in sensitivity of the monocathodic microelectrode during profiling. Shipboard time course measurements with Clark type electrodes demonstrated transient conditions upon sediment retrieval on deck and indicated enhanced rates of oxygen consumption in the surface sediment, presumably as a result of lysis or exudation of oxidisable substrates by infauna. As a result, oxygen fluxes calculated from shipboard oxygen profiles overestimated in situ fluxes by up to a factor of 5 for water depths >1000 m.The sediments from the canyon and from a depositional area on the shelf were enriched in organic carbon (3–4.5 wt%) relative to the open margin stations (0.5–2 wt%) and showed C/N ratios exceeding Redfield stoichiometry for marine organic matter, indicating there was deposition of organic carbon of terrestrial origin in these areas. The oxidation of organic carbon on the open margin declined from ˜11 gCm⁻²y⁻¹ on the shelf to 2 gCm⁻²y⁻¹ at 5000 m water depth, and was dominated by aerobic oxidation. The reactivity of the degradable organic carbon at the time of deposition was <2.5 y⁻¹ on the shelf, and declined to <0.5 y⁻¹ offshore. The burial of refractory organic carbon at the stations along the open margin transects also declined with increasing water depth from ˜5 gCm⁻²y⁻¹ on the shelf to <1 gCm⁻²y⁻¹ at 2000 m depth, whereas the burial of particulate inorganic carbon declined from ˜20 gCm⁻²y⁻¹ to <5 gCm⁻²y⁻¹. A comparison of the estimated total organic carbon deposition and predicted delivery for the shelf suggest that 58 to 165 gCm⁻²y⁻¹ is oxidized in the water column, laterally advected, or focused into one of the canyons.Anaerobic oxidation, denitrification and, therefore, total oxidation of organic carbon was enhanced within the canyon relative to the open margin. Total organic carbon oxidation decreased with water depth from 22 gCm⁻²y⁻¹ at the head of the canyon to 3 gCm⁻²y⁻¹ over its fan. The reactivity of the organic carbon deposited in the canyon was lower than those of the shelf stations, suggesting that the canyon is being enriched in older, laterally advected organic matter. The burial of refractory organic carbon in sediments from the Nazaré Canyon was considerably higher than in the sediments from the open margin; it also decreased with depth from 20 gCm⁻²y⁻¹ at 343 m to ˜2.5 gCm⁻²y⁻¹ at 4298 m water depth. The burial of particulate inorganic carbon was slightly lower than that of refractory organic carbon.The burial of refractory organic carbon and the deposition of degradable organic carbon were both positively correlated with the sedimentation rates for the Iberian Margin, and indicated burial efficiencies were 0.6 to 48%. A single trend for burial efficiency versus sedimentation rate for both the canyon and the open margin indicates that the sedimentation rate was the master variable for the geographical distribution of organic carbon oxidation and carbon preservation on the NW Iberian Margin.