Preservation of the shell matrix protein dermatopontin in 1500 year old land snail fossils from the Bonin islands

Organic molecules such as proteins can be preserved in certain fossils. The bulk properties of fossil proteins of both vertebrates and invertebrates have been studied for over half a century. Named proteins have so far been identified, however, only in vertebrate fossils, such as collagen from mammoth bones. Using immunological assays, we examined 1500 year old fossils of the extinct land snail Mandarina luhuana from the Bonin islands for the presence of dermatopontin, a molluscan shell matrix protein. First, we examined the shell microstructure and mineralogy of the fossil shells using scanning electron microscopy (SEM) and powder X-ray diffraction (XRD) in order to estimate the extent of diagenetic alteration. The results suggest that the original microstructure and mineralogy of the shells are preserved. Antiserum raised against the Type-1 dermatopontin fragment of the living land snail Euhadra brandtii showed significant immunological reactivity with the extracts from the fossil shells of M. luhuana. Immunological binding curves drawn for the shell extracts of extant M. aureola and the extinct M. luhuana confirmed the presence of dermatopontin in the fossil shells and provided an estimate that about 75–98% of the original dermatopontin was lost from the M. luhuana fossils. This is the first report of a named protein being identified in invertebrate fossils.     

He–Ar and Nd–Sr isotopic compositions of late Pleistocene felsic plutonic back arc basin rocks from Ulleungdo volcanic island, South Korea: Implications for the genesis of young plutonic rocks in a back arc basin

We report analyses of noble gases and Nd–Sr isotopes in mineral separates and whole rocks of late Pleistocene (< 0.2 Ma) monzonites from Ulleungdo, South Korea, a volcanic island within the back arc basin of the Japan island arc. A Rb–Sr mineral isochron age for the monzonites is 0.12 ± 0.01 Ma. K–Ar biotite ages from the same samples gave relatively concordant ages of 0.19 ± 0.01and 0.22 ± 0.01 Ma. ⁴⁰Ar/³⁹Ar yields a similar age of 0.29 ± 0.09 Ma. Geochemical characteristics of the felsic plutonic rocks, which are silica oversaturated alkali felsic rocks (av., 12.5 wt% in K₂O + Na₂O), are similar to those of 30 alkali volcanics from Ulleungdo in terms of concentrations of major, trace and REE elements. The initial Nd–Sr isotopic ratios of the monzonites (⁸⁷Sr/⁸⁶Sr = 0.70454–0.71264, ¹⁴³Nd/¹⁴⁴Nd = 0.512528–0.512577) are comparable with those of the alkali volcanics (⁸⁷Sr/⁸⁶Sr = 0.70466–0.70892, ¹⁴³Nd/¹⁴⁴Nd = 0.512521–0.512615) erupted in Stage 3 of Ulleungdo volcanism (0.24–0.47 Ma). The high initial ⁸⁷Sr/⁸⁶Sr values of the monzonites imply that seawater and crustally contaminated pre-existing trachytes may have been melted or assimilated during differentiation of the alkali basaltic magma.A mantle helium component (³He/⁴He ratio of up to 6.5 RA) associated with excess argon was found in the monzonites. Feldspar and biotite have preferentially lost helium during slow cooling at depth and/or during their transportation to the surface in a hot host magma. The source magma noble gas isotopic features are well preserved in fluid inclusions in hornblende, and indicate that the magma may be directly derived from subcontinental lithospheric mantle metasomatized by an ancient subduction process, or may have formed as a mixture of MORB-like mantle and crustal components. The radiometric ages, geochemical and Nd–Sr isotopic signatures of the Ulleungdo monzonites as well as the presence of mantle-derived helium and argon, suggests that these felsic plutonic rocks evolved from alkali basaltic magma that formed by partial melting of subcontinental lithospheric mantle beneath the back arc basin located along the active continental margin of the southeastern part of the Eurasian plate.     

Experimental study on the deterioration and natural remediation of the Ariake Sea tidal mud caused by the sea laver treatment acid practice and the upward seepage of pore water liquid

This study presents a laboratory study of the following two aspects: (1) the influence of sea laver treatment acid on the geoenvironmental properties of Ariake Sea tidal mud, and (2) the natural remediation effect on the sea laver treatment acid contaminated Ariake Sea tidal mud caused by the upward seepage of pore water liquid in the mud. Firstly, the mechanisms of the transport of sea laver treatment acid in the Ariake Sea tidal mud and the generation mechanisms of the upward seepage flow in the Ariake Sea tidal mud are discussed. Secondly, a series of one-dimensional laboratory infiltration tests were carried out to investigate the deterioration of the Ariake Sea tidal mud caused by the sea laver acid treatment practice. Test results reveal that the acid treatment practice caused considerable change in the geochemical properties of the mud in terms of increase in sulfide content and decrease in pH value. After the treatment by the sea laver treatment acid, the sulfide content of the mud even exceeded the safe limit value for the benthos, which represents undesirable living condition for benthos. Thirdly, series of laboratory fresh seawater infiltration tests for the deteriorated Iida site mud were conducted to illustrate this natural remediation efficiency. It is found that with the infiltration of the fresh seawater, the sulfide content of the Iida site mud was considerably reduced and pH value increased to an acceptable range for benthos living in the tidal flat mud. With the increase in the infiltration time and the hydraulic gradient, the remediation efficiency could be increased.     

Upwelling plumes in sagami bay and adjacent water around the Izu Islands,Japan

Water plumes, 20 km long or less, identified by low temperature, high salinity and high nutrient concentrations, were observed on the eastern side of Izu Islands where the Kuroshio Current or its branch flowed eastward. The T-S diagrams and the vertical profiles of oceanographic variables indicated that the water plumes resulted from the upwelling of subsurface water. A newly formed plume, characterized by a sharp temperature front and high nutrient concentrations, contained less chlorophyll than did old plumes. It is suggested that the upwelling plumes are maintained for a period long enough to allow luxuriant growth of phytoplankton.     

Ecological distribution of macrobenthic animals on the level bottom in maizuru Bay-I

Macrobenthos were investigated at 77 stations on the level bottom of Maizuru Bay in the spring season in 1971. Among the animals collected in this survey, two animal groups,i.e. bivalves and polychaetes, predominated.Theora lubrica was the most predominant species, occupying 39 % of the total individuals collected. An apodan holothurian,Notomastus sp.,Prionospio ehlcrsi andLumbrineris longifolia also prevailed in number.According to the similarity of the composition of eight species common in the present area, the sampling stations were classified into four categories. As the stations belonging to each category are distributed in a peculiar portion of the bay, the bay can be divided into four areas, A–D, which are characterized as follows: Area A,Theora lubrica is highly predominant; Area B, an apodan holothurian and six common polychaetes (Notomastus sp.,Lumbrineris longifolia, Paraprionospio pinnata, Glycera chirori, Tharyx sp. andPolycirrus sp.) are relatively abundant; Area C, intermediate between Areas A and B; Area D, the above-mentioned eight species are scanty. These regional divisions of the bay correspond well with those based on the physico-chemical conditions on the bottom. Benthic feature of each area of the bay was discussed in connection with the bottom environment.Comparison of the present results with the previous data has revealed a considerable decrease of population density during the past 25 years in the area concerned.     

Mean pole,z-term and Kuroshio

Secular variations of the mean pole and the z-term in the latitudinal vatiations are discussed geophysically in relation to oceanic motions on the large scale, particularly, to the variations of the Kuroshio system.It is shown that the large scale meanders of the Kuroshio occurred when the direction of displacement of the mean pole turned to the European continent from the North East Pacific and when the z-term changed from decrease to increase. The libration of the mean pole has connection with the zonal circulation of the oceanic mass and the secular variation of the z-term has connection with that of the meridional circulation. The large abrupt decrease in the z-term during 1955–1959 has close connection with the wellknown abnormal variation of sea surface temperature in the North Pacific during the same period.The structures of occurrence of the Kuroshio meanders in 1934 and 1969 may be different from those in 1953 and 1959, and the Kuroshio meander perhaps occurred after 1916 and existed during 2 or 3 years. Particularly the occurrence of the Kuroshio meander in 1959 may originate in the abrupt southward flow of oceanic mass in the Pacific.Except for some cases great earthquakes with magnitude of nearly 8 occurred near the Japan Trench and the Kurile-Kamchatka Trench about one year before the occurrences of the Kuroshio meander, and in the regions from the Alaska Peninsula to the Japan Islands great earthquakes occurred during the disappearance of the Kuroshio meander with a few exceptions.Existence of dynamical interactions between the ocean and the solid-earth may be suggested.     

Biogeochemical Variation in Dimethylsulfide, Phytoplankton Pigments and Heterotrophic Bacterial Production in the Subarctic North Pacific during Summer

Dimethylsulfide (DMS), chlorophyll a (Chl-a), accessory pigments (fucoxanthin, peridinin and 19-hexanoyloxyfucoxanthin), and bacterial production (BP) were measured in the surface layer (0–100 m) of the subarctic North Pacific, including the Bering Sea, during summer (14 July–5 September, 1997). In surface sewater, the concentrations of DMS and Chl-a varied widely from 1.3 to 13.2 nM (5.1 ± 3.0 nM, mean ± S.D., n = 48) and from 0.1 to 2.4 µg L^–1 (0.6 ± 0.6 µg L^–1, n = 24), respectively. In the subarctic North Pacific, DMS to Chl-a ratios (DMS/Chl-a) were higher on the eastern side than the western side (p < 0.0001). Below the euphotic zone, DMS/Chl-a ratios were law and the correlation between DMS and Chl-a was relatively strong (r ² = 0.700, n = 27, p < 0.0001). In the euphotic zone, DMS/Chl-a ratios were higher and the correlation between DMS and Chl-a was weak (r ² = 0.128, n = 50, p = 0.01). The wide variation in DMS/Chl-a ratios would be at least partially explained by the geographic variation in the taxonomic composition of phytoplankton, because of the negative correlation between DMS/Chl-a and fucoxanthin-to-Chl-a ratios (Fuc/Chl-a) (r ² = 0.476, n = 26, p = 0.0001). Furthermore, there was a positive correlation between DMS and BP (r ² = 0.380, n = 19, p = 0.005). This suggests that BP did not represent DMS and dimethylsulfoniopropionate (DMSP) removal by bacterial consumption but rather DMSP degradation to DMS by bacterial enzyme.     

Evaluation of change in subsurface thermal environment due to groundwater flow in the Tokyo Lowland,Japan

Information on the distribution of subsurface temperature and hydraulic heads at 24 observation wells in and around the Tokyo Lowland, the eastern part of the Tokyo Metropolitan area, were examined to make clear the relationship between groundwater and the subsurface thermal environment in the urban area. Minimums in temperature–depth logs due to subsurface temperature increasing at shallow parts were recognized in 21 wells. This fact shows subsurface temperature is affected by ground surface warming in almost all of this area. Deeper than minimums, where the effects of surface warming became relatively small, regional variation is observed as follows: high temperatures are shown in the central part to the southern part, and low temperatures shown in the inland to eastern part. The high temperature area corresponds to an area where the lower boundary of groundwater flow is relatively shallow. This area corresponds also to an area with severe land subsidence resulting from excessive groundwater pumping. It is considered that this high temperature area is formed by the effects of upward groundwater flow affected by hydrogeological conditions and pumping. On the other hand, a comparison between past data (1956–1967) and present data (2001–2003) revealed widespread decreasing temperature in the inland area. This is explained by downward groundwater flow based on an analysis of temperature–depth logs. This fact suggests that subsurface temperature is not only increasing from the effects of surface warming but also decreasing from the effects of groundwater environment change due to pumping.     

Process of Housing Damage Assessment: The 1995 Hanshin-Awaji Earthquake Disaster Case

Rebuilding of victims' livelihoods was a crucial issue in the restoration process in the1995 Hanshin-Awaji Earthquake Disaster. Housing damage assessment influencedmost of the rebuilding of the livelihood in the long term, because the Victim Certificatesissued by the local governments based on the results of the Housing damage assessmentwas required to receive most of the individual assistance measures. In the process ofHousing damage assessment, many complex problems arose, leading to extensivework on the part of the disaster responders. Consequently, a considerable number ofvictims were dissatisfied with the assessment and applied for a resurvey. Due to a floodof requests for resurvey, disaster responders had to work on damage assessment, leavingrelief activities aside.In order to facilitate Housing damage assessment, this paper discusses thefollowing five points: (1) the processes and the problems of assessments performedin the Hanshin-Awaji Earthquake Disaster, (2) the changes in the nature of informationneeded by the victims, (3) the improvements over the present damage assessment, (4)the housing situation in Japan, and (5) the international situation on damage assessment.It is obvious from the results that a poor damage assessment system and the size ofthe disaster produced a very large work load. Differences in appreciation among theinvestigators also contributed to unfair assessments and led to the victims beingincreasingly dissatisfied by the survey results. Finally, a design concept for acomprehensive damage assessment system, which has been derived from theabove five points, is proposed for post-disaster management.