Life habit of vesicomyid clam,Calyptogena soyoae,and hydrogen sulfide concentration in interstitial waters in Sagami Bay,Japan

In and around the beds of vesicomyid clam (Calytogena soyoae) located off Hatsushima Island in Sagami Bay, central Japan, hydrogen sulfide concentration in bottom water and interstitial water was measured every 10 cm from just above seafloor to 40 cm deep usingin situ separative dialysis bags. While hydrogen sulfide over 0.01 mmol/kg was not measured from the seawater just above the dense clam beds, the concentration of hydrogen sulfide increased rapidly below 10 cm deep. The results indicate that the habit of the clam is correlated with high concentration of hydrogen sulfide contained in pore waters of sediments between depths of 10 and 20 cm from the bottom surface. Concentrations of hydrogen sulfide ranging from approximately 0.05 mmol/kg to 0.6 mmol/kg might be suitable requirement for the habitat ofC. soyoae.     

Seasonal and Spatial Variations of Total Mass Flux around Coral Reefs in the Southern Ryukyus,Japan

Total mass flux, size distribution of sediment particles and some chemical components such as total carbon (TC), total nitrogen (TN) and calcium carbonate (CaCO₃) were monitored monthly using a multi-cup sediment traps at seven coral reef sites (6 reef flat and 1 reef slope) of the Marine Protected Areas around Ishigaki, Kohama, Kuroshima and Iriomote Islands in the southern Ryukyus, Japan from September 2000 to September 2001. The size distribution of trapped sediments revealed mostly uni-modal fine sand to mud in the reef flat and gravelly to coarse sand in the reef slope. The total mass flux ranged between 0.54 to 872 gm⁻²d⁻¹, and showed a pronounced seasonality (high in summer-autumn and low in spring) at each site, which was consistent with the rainfall and typhoon regime. Exceptionally high values were observed on the reef slope (Iriomote) in February–March 2001 (1533 gm⁻²d⁻¹) owing to a large amount of bottom sediment re-suspension. On the reef flat (Todoroki South and North; Ishigaki), values obtained in July–August 2001 (872 gm⁻²d⁻¹) and August–September 2001 (800 gm^{− 2}d⁻¹) indicate the high terrestrial discharge from Todoroki River. Trapped sediment particles consist of CaCO₃ (1.2–27.1%) and a non-carbonate fraction (98.8–72.9%), which contains total carbon (4.9–26%), carbonate carbon (CO₂-C) (0.2–3.1%) and non-carbonate carbon (NC-C) (7.9–25.6%). Total nitrogen content was in the range 0.02–0.48%. TN is contained mainly in the carbonate fraction and NC-C may be contained in the non-carbonate fraction. The low TN/OC ratio of the trapped sediments suggests that they were mostly of terrestrial origin and that both fractions migrated. The high total mass flux derived from Todoroki River exceeded the threshold at which a lethal effect on coral community is caused. The results stress the importance of conducting seasonal studies of sedimentation over more than one year and at more than one location in south Japan coral reef ecosystems to gain an understanding of the processes controlling the total mass fluxes and their nutrients content, also to develop an awareness of how to prevent the damage of coral reef ecosystems and, if it does occur, to allow mitigation measures to be undertaken.     

Particulate peptidoglycan in seawater determined by the silkworm larvae plasma (SLP) assay

Peptidoglycan (PG) is a biopolymer found exclusively in the cell wall of bacteria. Recent chemical analysis of particulate organic matter suggests that a major amount of the muramic acid, an amino sugar present only in PG, could not be accounted for in terms of bacterial cells (Benner and Kaiser, 2003); however, data on particulate PG is quite sparse. In the present study, conducted in 1996, the PG was examined at 5 sampling sites in the northwestern Pacific Ocean, and in natural seawater cultures. Particulate PG, which was concentrated using a 96-well filtration plate equipped with Durapore filters (pore size, 0.22 μm), was measured by the silkworm larvae plasma (SLP) assay. The PG concentration generally decreased with depth and correlated significantly with bacterial abundance throughout the entire water column. However, the ratio of particulate PG to bacterial abundance varied with depth. The average ratio was 0.61 ± 0.53 (average ± SD, n = 40) between 50 and 2000 m, which agreed with the bacterial cellular PG content from 0.63 to 1.1 fg cell⁻¹ obtained in seawater cultures. On the other hand, the ratios of PG to bacteria from the surface to 50 m (3.7 ± 2.6, n = 29) and below 2,000 m (2.1 ± 1.7, n = 7) were significantly higher than that between 50 and 2,000 m. These results may suggest that, in the surface and deep layers, a significant fraction of particulate PG was present in bacterial detritus, whereas this fraction was reduced in the middle layer.     

Numerical study of enhanced energy dissipation near a seamount

Using a two-dimensional primitive equation model, we examine nonlinear responses of a semidiurnal tidal flow impinging on a seamount with a background Garrett-Munk-like (GM-like) internal wavefield. It is found that horizontally elongated pancake-like structures of high vertical wavenumber near-inertial current shear are created both in the near-field (the region over the slope of the seamount) and far-field (the region over the flat bottom of the ocean). An important distinction is that the high vertical wavenumber near-inertial current shear is amplified only at mid-latitudes in the far-field (owing to a parametric subharmonic instability (PSI)), whereas it is amplified both at mid-and high-latitudes (above the latitude where PSI can occur) in the near-field. In order to clarify the generating mechanism for the strong shear in the near-field, additional numerical experiments are carried out with the GM-like background internal waves removed. The experiments show that the strong shear is also created, indicating that it is not caused by the interaction between the background GM-like internal waves and the semidiurnal internal tides. One possible explanation is proposed for the amplification of high vertical wavenumber near-inertial current shear in the near-field where tide residual flow resulting from tide-topography interaction plays an important role in transferring energy from high-mode internal tides to near-inertial internal waves.     

Japan-equator XBT sections in late November 1989 and in early December 1991

A comparison between Japan-equator XBT sections along 150°E in late November 1989 and along 140°E in early December 1991 is made. The warmest surface water above 29°C diminished to the south of 2–4°N and the surface mixed layer noticeably decreased in thickness in the equatorial region in December 1991; besides, the North Equatorial Countercurrent was intensified. This is considered to be a manifestation of changes in the surface layer of the western equatorial Pacific in the mature phase of El Niño.     

Thermostads and circulation in the upper layer of the Atlantic Ocean

There are three major permanent thermostads with roughly the same potential densities in the upper layer of the Atlantic Ocean. One is the thermostad of the 13°C Water in the equatorial Atlantic. The original type of the 13°C Water is formed in the thermocline in the eastern sector of the South Atlantic subtropical gyre by vertical mixing of dense, low-salinity water from the winter outcrop farther south and overlying less dense, high-salinity water. There might also be a lateral contribution of relatively high-salinity water from the Indian Ocean. The original 13°C Water thus formed is transported northwestward along the northern edge of the subtropical gyre and fed into the North Brazilian Current, which flows equatorward along the coast of Brazil. In the region of the equator, the Equatorial Undercurrent and the subsurface North and South Equatorial countercurrents branch off from the North Brazilian Current and carry the 13°C Water eastward to the thermostad region. Vertical mixing does not explain the development of the thermostad, but is found to be essential in determining the ultimate characteristics of the 13°C Water. The other two thermostads are those of the 18°C Water in the Sargasso Sea and the Subantarctic Mode Water in the western South Atlantic. Unlike the 13°C Water, both of these mode waters are formed as thermostads in the surface layer by winter convection, but vertical mixing in the subtropical gyres may play a role in determining their characteristics. All the three thermostads appear to be required to balance the system of flows in opposing directions.     

Water exchange and material exchange through a strait due to tidal flow

The process of material transport through a strait due to tidal flow is modeled, and then the differences between various concepts of tidal exchange which have been used hitherto are pointed out using this model. In particular, the exchange of water itself and the exchange of material should be distinguished even in the case where the material of interest is carried by the water,i.e., the material and water move as one body. Further, the physical meaning of “tidal trapping” (Fischeret al., 1979) is discussed by using the model in this paper. The relationship between the exchange ratio for the water itself (r) and the phase lag (δ) of material concentration to the tidal stream in a section of the strait, which is an important factor in tidal trapping, is obtained as follows: $$\delta = \tan ^{ - 1} \left( {\tfrac{1}{r} - 1} \right)$$ Observational results at Lake Hamana (Shizuoka Pref) and at Kabira Cove (Okinawa Pref.) support the validity of the above relationship.     

Petrography and uplift history of the Quaternary Takidani Granodiorite: could it have hosted a supercritical (HDR) geothermal reservoir?

The Quaternary Takidani Granodiorite (Japan Alps) is analogous to the type of deep-seated (3–5 km deep) intrusive-hosted fracture network system that might support (supercritical) hot dry/wet rock (HDR/HWR) energy extraction. The I-type Takidani Granodiorite comprises: porphyritic granodiorite, porphyritic granite, biotite-hornblende granodiorite, hornblende-biotite granodiorite, biotite-hornblende granite and biotite granite facies; the intrusion has a reverse chemical zonation, characterized by >70 wt% SiO₂ at its inferred margin and <67 wt% SiO₂ at the core. Fluid inclusion evidence indicates that fractured Takidani Granodiorite at one time hosted a liquid-dominated, convective hydrothermal system, with <380°C, low-salinity reservoir fluids at hydrostatic (mesothermal) pressure conditions. ‘Healed’ microfractures also trapped >600°C, hypersaline (35 wt% NaCl_eq) fluids of magmatic origin, with inferred minimum pressures of formation being 600–750 bar, which corresponds to fluid entrapment at 2.4–3.0 km depth. Al-in-hornblende geobarometry indicates that hornblende crystallization occurred at about 1.45 Ma (7.7–9.4 km depth) in the (marginal) eastern Takidani Granodiorite, but later (at 1.25 Ma) and shallower (6.5–7.0 km) near the core of the intrusion. The average rate of uplift across the Takidani Granodiorite from the time of hornblende crystallization has been 5.1–5.9 mm/yr (although uplift was about 7.5 mm/yr prior to 1.2 Ma), which is faster than average uplift rates in the Japan Alps (3 mm/yr during the last 2 million years). A temperature–depth–time window, when the Takidani Granodiorite had potential to host an HDR system, would have been when the internal temperature of the intrusive was cooling from 500°C to 400°C. Taking into account the initial (7.5 mm/yr) rate of uplift and effects of erosion, an optimal temperature–time–depth window is proposed: for 500°C at 1.54–1.57 Ma and 5.2±0.9 km (drilling) depth; and 400°C at 1.36–1.38 Ma and 3.3±0.8 km (drilling) depth, which is within the capabilities of modern drilling technologies, and similar to measured temperature–depth profiles in other active hydrothermal systems (e.g. at Kakkonda, Japan).     

Hydrothermal Quartz Vein Formation, Revealed by Coupled SEM-CL Imaging and Fluid Inclusion Microthermometry: Shuteen Complex, South Gobi, Mongolia

Abstract. Scanning electron microscopy-cathodoluminescence (SEM-CL) imaging of vein quartz in the Cu-mineralised, Shuteen Complex (South Gobi, Mongolia) has revealed a complex history of crystal growth, dissolution and microfracture healing, associated with several hydrothermal events that could not be detected using other observational techniques (e.g. transmitted/reflected light microscopy, back-scattered electron imaging, or secondary electron imaging).
The quartz initially grew as CL-bright/grey crystals in a 345±30C liquid reservoir, as inferred by the analysis of primary liquid fluid inclusions (average Th of 343C; 6.6∼7.7 wt% NaCl_eq). Quartz precipitation occurred at the edge of the crystals as reservoir fluids cooled to 260±25C, as indicated by micron-scale CL-dark/CL-bright quartz growth bands containing abundant fluid inclusions (with an average T_h values of 261C). Pressure fluctuations were the likely cause of dissolution, as SEM-CL imaging reveals the quartz have corroded or rounded crystal edges, and precipitation of later quartz into open space. SEM-CL imaging shows the quartz contains healed microfractures that trapped low salinity fluids (3.9 wt% NaC1_eq) with Th values of 173±15C.
SEM-CL imaging provides a means of deciphering the thermal and chemical evolution of the fossil Shuteen hydrothermal system, and the nature of hydrothermal quartz vein-forming processes, by facilitating the correlation of distinct fluid inclusion populations and their relative chronology, with specific hydrothermal events.