Stable carbon-isotopic compositions of lipids isolated from the ammonia-oxidizing chemoautotroph Nitrosomonas europaea

For the ammonia-oxidizing bacterium Nitrosomonas europaea, grown autotrophically using semicontinuous culturing, average biomass was depleted in ¹³C relative to CO₂ dissolved in the medium by ca. 20‰ and the total-lipid extract was depleted in ¹³C relative to biomass by 3.7‰. The n-alkyl lipids (weighted average of fatty acids) and isoprenoid lipids (weighted average of hopanoids) were both depleted in ¹³C relative to biomass by about 9‰. The large depletion in the isoprenoid lipids seems to indicate that isotopic fractionations associated with the biosynthesis of methylerythritol phosphate (MEP) affected at least two carbon positions in each isoprene unit. Among the fatty acids, trans-9-hexadecenoic acid was most depleted (13.0‰ relative to biomass), followed by cis-9- hexadecenoic acid (9.6‰) and hexadecanoic acid (6.9‰). Isotopic relationships between the three acids suggest that significant isotope effects were associated with the desaturation and cis to trans isomerization of fatty acids. Given these observations, hopanoids produced by ammonia-oxidizing bacteria growing in natural waters are likely to be depleted in ¹³C by 26–30‰ relative to dissolved CO₂. Since CO₂ at aquatic oxyclines is often depleted in ¹³C, the range of δ values expected for hopanoids is ca. −34‰ to −55‰. The δ values of geohopanoids observed in numerous studies and attributed to unspecified chemoautotrophs fall within this range.     

CO<Subscript>2</Subscript> Flux Measurements over the Sea Surface by Eddy Correlation and Aerodynamic Techniques

The measurements of the vertical transport of CO₂ were carried out over the Sea of Japan using the specially designed pier of Kyoto University on September 20 to 22, 2000. CO₂ fluxes were measured by the eddy correlation and aerodynamic techniques. Both techniques showed comparable CO₂ fluxes during sea breeze conditions: −0.001 to −0.08 mg m⁻²s⁻¹ with the mean of −0.05 mg m⁻²s⁻¹. This means that the measuring site satisfies the fetch requirement for meteorological observations under sea breeze conditions. Moreover, the eddy diffusivity coefficient used in the aerodynamic technique is found to be consistent with the coefficient used in the eddy correlation technique. The present result leads us to conclude that the aerodynamic technique may be applicable to underway CO₂ flux measurements over the ocean and may be used in place of the bulk technique. The important point is the need to maintain a measuring accuracy of CO₂ concentration difference of the order of 0.1 ppmv on the research vessels or the buoys.     

Mercury distribution in seawater in Minamata Bay and the origin of particulate mercury

Horizontal and vertical distributions of mercury were determined in seawater in Minamata Bay and Yatsushiro Sea. The concentrations of total and particulate mercury respectively ranged from 56–285 ng l^–1 and 2.1–506 ng l^–1. They were both highest in the inner most part of Minamata Bay where the sediment was most heavily polluted, and decreased with increasing distance from there. Vertically, an evident increase in concentration was observed near the bottom. A good agreement was found between the mercury content in suspended matter and that in fine sediment particles.These facts show that the particulate mercury is supplied mostly from the bottom sediment, and that it is spreading offshore with dispersing in seawater. This process would eventually result in the pollution of sediment in Yatsushiro Sea.     

Degradation of lubricating oils by marine bacteria observed by quantitative mass spectrometry

Bacterial degradation of the hydrocarbons of lubricating oils was investigated by mass spectrometric analysis which gives both total amount and the composition of hydrocarbon types of residual oil. An unused lubricating oil, which mainly consisted of hydrocarbon types with only a small percentage ofn-alkanes, was degraded by marineBacillus sp. andPseudomonas sp. with 55 % and 25 % decreases in 10 days, respectively. Susceptibility of respective hydrocarbon types to biodegradation was in the following order: alkanes > non-condensed cycloalkanes, mono-aromatics > condensed cycloalkanes. A used lubricating oil of different brand showed a larger decrease than the unused oil. Both species of bacteria degraded large portions of alkane fraction of Arabian light crude oil.     

Controlled experiment in the ionosphere with a rocket-borne plasma gun

A controlled active experiment was performed by a plasma gun on-board a rocket to study the plasma stream across the magnetic field in space. A mother and daughter system was employed. An 8 kV 0.8 μF (25 J) capacitor bank on the daughter rocket was discharged every 12 s and about 10¹⁶ ion and electron pairs were ejected. A plasma signal was detected on the electron temperature probe. The propagation speed of the plasma stream is estimated to be 10⁶ cm/s, considerably lower than that obtained in the prelaunch test. The amplitude of the plasma signal decays as the inverse square of the mutual distance between the mother and daughter rockets and this decay is much slower than the free streaming. The importance of the geomagnetic field on the plasma propagation in space is discussed.     

Polar and neutral isopranyl glycerol ether lipids as biomarkers of archaea in near-surface sediments from the Nankai Trough

The molecular and carbon isotopic compositions of polar isopranyl glycerol ether lipids, which are direct indicators of viable archaea, and neutral isopranyl glycerol ether lipids, which are derived from polar lipids via hydrolysis, in near-surface sediments from a methane seep in the Nankai Trough (off central Japan) were investigated. Procedures for extracting, separating and derivatizing polar and neutral ether lipids for detection using gas chromatography were first examined with one sediment sample and a cultivated methanogen. For all sediment samples, archaeol and hydroxyarchaeol were detected in both the polar and neutral ether lipid fractions. Acyclic and cyclic biphytanes were also detected in both types of lipid fractions after treatment with HI/LiAlH₄ for ether cleavage and alkylation. The δ¹³C values of archaeol, sn-2-hydroxyarchaeol, and sn-3-hydroxyarchaeol in the sample from 0.82 m below the seafloor were lower than −100‰ relative to PDB, indicating that diverse living methanotrophic archaea are present in the seep sediments. Biphytanes released from polar ether lipids in the same sample were less depleted in δ¹³C (−71‰ to −36‰). The wide range of δ¹³C values suggests that the biphytanes were derived not only from methanotrophic but also from non-methanotrophic archaea, and that the relative contributions of the methanotrophic and non-methanotrophic archaea differed, depending on the biphytane compound. The vertical profiles and δ¹³C values of the neutral ether lipids were similar to those of the intact polar ether lipids, suggesting that neutral ether lipids derived from fossil archaea in the samples had mainly been lost by the time of sampling.     

Bedrock structure in Adapazari, Turkey—a possible cause of severe damage by the 1999 Kociaeli earthquake

The 1999 Kocaeli earthquake brought serious damage to downtown of Adapazari. To study why strong motions were generated at the town, a bedrock structure was investigated on the basis of Bouguer gravity anomaly, and SPAC and H/V analyses of microseisms. It was revealed that, the basin consists of three narrow depressions of bedrock with very steep edges, extending in E–W or NE–SW directions along the North Anatolia faults, and the depth to bedrock reaches 1000 m or more. Downtown of Adapazari is located 1–2 km apart from the basin-edge. It is considered that, the specific configuration of bedrock amplifies ground motions at the downtown area by focusing of seismic waves and/or interference between incident S-waves and surface-waves secondarily generated at the basin-edge. Studying 3D bedrock structure is an urgent issue for microzoning an urban area in a sedimentary basin.     

Metamorphism and metamorphic K–Ar ages of the Mesozoic accretionary complex in Northland, New Zealand

Abstract A southwest dipping Mesozoic accretionary complex, which consists of tectonically imbricated turbiditic mudstone and sandstone, hemipelagic siliceous mudstone, and bedded cherts and basaltic rocks of pelagic origin, is exposed in northern North Island, New Zealand. Interpillow limestone is sometimes contained in the basaltic rocks. The grade of subduction‐related metamorphism increases from northeast to southwest, indicating an inverted metamorphic gradient dip. Three metamorphic facies are recognized largely on the basis of mineral parageneses in sedimentary and basaltic rocks: zeolite, prehnite‐pumpellyite and pumpellyite‐actinolite. From the apparent interplanar spacing d₀₀₂ data for carbonaceous material, which range from 3.642 to 3.564 Å, the highest grade of metamorphism is considered to have attained only the lowermost grade of the pumpellyite‐actinolite facies for which the highest temperature may be approximately 300°C. Metamorphic white mica K–Ar ages are reported for magnetic separates and <2 µm hydraulic elutriation separates from 27 pelitic and semipelitic samples. The age data obtained from elutriation separates are approximately 8 m.y. younger, on average, than those from magnetic separates. The age difference is attributed to the possible admixture of nonequilibrated detrital white mica in the magnetic separates, and the age of the elutriation separates is considered to be the age of metamorphism. If the concept, based on fossil evidence, of the subdivision of the Northland accretionary complex into north and south units is accepted, then the peak age of metamorphism in the north unit is likely to be 180–130 Ma; that is, earliest Middle Jurassic to early Early Cretaceous, whereas that in the south unit is 150–130 Ma; that is, late Late Jurassic to early Early Cretaceous. The age cluster for the north unit correlates with that of the Chrystalls Beach–Taieri Mouth section (uncertain terrane), while the age cluster for the south unit is older than that of the Younger Torlesse Subterrane in the Wellington area, and may be comparable with that of the Nelson and Marlborough areas (Caples and Waipapa terranes).     

Habitability analyses of aquatic bacteria

Habitability is defined as an ability of an organism to inhabit different environments. Habitability of organisms, however, cannot be inferred from analyses such as a whole genome or community structures. A recently developed database, the MetaMetaDB, gives us information from what kind of environments one particular 16S rRNA sequence data has ever been obtained, and thus enables us to infer the habitability of the bacterium in question. In order to check the applicability of this database to study the habitability of aquatic bacteria, samples collected at two Naka River stations, one estuarine station from Naka River Estuary, two coastal stations at Oarai in Ibaraki Prefecture, Japan and one station in the Kuroshio Current of the western North Pacific were examined. The phylotypes were tracked against the MetaMetaDB and it was reasonably found that the low-salinity stations were dominated by sequences with “freshwater and groundwater”, “human” and “wastewater” habitat identities, while the high-salinity stations were dominated by those with a “marine” identity. The phylotypes of low-salinity stations with a particular habitat identity were absent or rare in the high-salinity stations and vice versa. The MetaMetaDB also showed that sequences of Cyanobacteria or related phylogenetic groups may be present in the human gut, as well as the probable distribution of the relatives (ancestors/descendants/siblings) of some bacteria. These overall findings proved that the MetaMetaDB is useful as a new tool to infer microbial habitability and it gives us new information on the possible origin and ecology of microorganisms in the environments.