Biogeochemical processes and nutrient cycling within an artificial reef off Southern Portugal

This study (2002/2004) examines the effect of artificial reef (AR) structures off the southern coast of Portugal on biogeochemical process and nutrient cycling. Organic and inorganic carbon, nitrogen, phosphorus and chlorophyll a were determined monthly in sediment cores and settled particles for a two-year period. Ammonium, nitrates, phosphates, silicates, total organic nitrogen and phosphorus, chlorophyll a and phaeopigments were also determined monthly in water samples within AR and control sites. Results of the two-year study showed that: (i) there was a significant exponential fit between organic carbon and chlorophyll a (r2=0.91; p<0.01) in reef sediment suggesting an increase of benthic productivity; (ii) organic carbon and nitrogen content in settled particles within AR environment was about four times higher two years after reef deployment; (iii) nutrients and chlorophyll a in the water column were higher at AR than control site. Two years after AR deployment, dissolved organic and inorganic compounds in near bottom water were 30-60% higher, emphasizing benthic remineralization processes at AR's organically rich sediment. Marked chemical changes in the ecosystem were observed during the two-year study period, reinforcing the importance of these structures for sandy coastal areas rehabilitation through trophic chain pull-out.     

Diet restriction induced autophagy: a lysosomal protective system against oxidative- and pollutant-stress and cell injury

Nutrient deprivation or dietary restriction (DR) confers protection against ageing and stress in many animals and induced lysosomal autophagy is part of this mechanism. The effects of dietary restriction on the toxicity of copper and the polycyclic aromatic hydrocarbon phenanthrene have been investigated in the common marine mussel Mytilus edulis. The findings show that DR-induced autophagy facilitates the recovery of the digestive gland (i.e., molluscan liver analogue) from cell injury caused by both copper and phenanthrene. It is inferred that DR-induced autophagy and lysosomal proteolysis results in improved cellular "housekeeping" through the more efficient removal of oxidatively and pollutant damaged proteins (e.g., protein carbonyls, protein adducts, etc.) and that this contributes to stress resistance.     

Integration of biochemical, histochemical and toxicogenomic indices for the assessment of health status of mussels from the Tamar Estuary, U.K

The aim of this study was to examine whether a combination of biochemical, histopathological and toxicogenomic data could be used as a valuable tool for the assessment of biological risk associated with pollutants within the Tamar River and Estuary, S.W. England, U.K. Accordingly, biochemical and histopathological biomarkers (protein carbonyls, lipofuscin, neutral lipids, lysosomal stability [N-acetyl-β-hexosaminidase and neutral red], lysosomal volume, ferric reducing antioxidant power [FRAP] and malonaldehyde [MDA]) and gene expression profiles were assessed in 5 sites from the Tamar River and Estuary (Neal Point, Town Quay, Wilcove, Cremyll Ferry and Whitsand; and a reference site, Trebarwith Strand, N. Cornwall). PAHs were measured in mussel tissue and sediment and metals were measured in mussel tissue only. Data from the biomarkers was integrated into a Mussel Expert System (MES) model to produce a simple assessment of mussel stress. Clear gradients of mussel toxicity were identified by the biomarkers (with the exception of neutral lipids) with the highest impacted animals found furthest up the Tamar, whilst the MES was unable to identify a gradient of effect. Gene expression profiles also indicated a gradient of stress with the greatest number of significantly up- or down- regulated genes found at the uppermost 2 sites. The MES did, however, determine that mussels from all sites, except the reference site, were highly stressed; a conclusion that could not be inferred from the biomarker data alone. It is concluded that the MES is a valuable tool that permits integration and interpretation of complex sets of biomarker data by identifying the biological meaning of biomarker changes.     

长江中游沙质河段床沙级配调整过程计算

三峡工程运用后,长江中游荆江河段持续冲刷,床沙与推移质、悬移质泥沙不断交换,从而造成该河段床沙发生不同程度的调整,对长江中下游河床演变及非平衡输沙机理的研究具有重要影响.在新水沙条件下,总结分析了沙波运动特性及床沙交换方式,引入Markov三态转移概率及非均匀沙隐暴系数,得到基于状态转移概率的沙质河段床沙级配调整的计算模型.研究结果表明:(1)20092014年,沙市站年内床沙中值粒径有先增大后减小的趋势,而监利站年内床沙中值粒径则先减小后增大,且荆江河段年际床沙中值粒径总体呈上升趋势,粗化程度约为6.9%~9.3%;(2)20092014年,沙市站床沙组成中粒径d<0.062 mm的泥沙所占比重不变,0.062 mm≤d<0.25 mm的泥沙所占比重逐年减少(累计减少11.4%),d≥0.25 mm的泥沙所占比重逐年增加(累计增加11.4%),而监利站床沙组成均存在波动性变化;(3)荆江河段床沙转换为推移质的概率随着泥沙粒径的增大而增大,床沙转换为悬移质的概率随着泥沙粒径的增大而减小,而推移质和悬移质转换为床沙的概率均随着泥沙粒径的增大而增大,河床发生冲刷粗化时泥沙输移的主要形式为悬移质(概率为81%~87%),而淤积细化时床沙补给主要来源于推移质(概率为8%~12%).通过验证,本文概率模型的计算结果与实测资料符合较好,能够应用于长江中游沙质河段年际床沙粗化及年内床沙级配调整过程预报,为进一步开展三峡工程下游非均匀悬移质泥沙沿程恢复机理的研究提供理论基础.     

Survivorship of coral juveniles in a fish farm environment

Intensive fish farming is an emerging coastal activity that can potentially enhance sedimentation and promote eutrophication in fringing coral reefs. Here, we investigate the effect of fish farm effluent on the juvenile survivorship of the reef-building coral Seriatopora caliendrum. One-month old juvenile corals (on terracotta tiles) were deployed in fish farm and reference (reef) sites in Bolinao, the Philippines at a depth of 2m. After forty days, no survivor was recovered in the fish farm, while survivorship was low (11%) in the reference site, with the survivors' growth rate at 3.3polypsmo(-1) or 1.3mm(2)mo(-1). The fish farm deployed tiles were covered with muddy sediment and were colonized by barnacles, whereas those in the reference site were overgrown by a short stand of filamentous macroalgae. Environmental monitoring revealed higher nutrient levels (ammonia and phosphate), sedimentation rate, and organic matter flux, as well as diminished water transparency and dissolved oxygen levels in the fish farm compared to the reference site. Hence, intensive fish farming offers a suite of physical, chemical and biological modifications of the coastal marine environment which have a detrimental effect on the survivorship of coral juveniles.     

No apparent lock-in depth of the Laschamp geomagnetic excursion: Evidence from the Malan loess

Developing an accurate chronological framework is always a key issue in paleoclimatic studies. Magneto- stratigraphy has been a routine tool for such purposes. However, complexities arise for inter-profile correla- tions of magnetostratigraphy due to effects of the lock-in process. One good example is the “mystery” of the mismatching of stratigraphic locations of the Matuyama/Brunhes boundary (MBB) (occurred at ~780 ka) recorded in Chinese loess and marine sedi- ments. Tauxe et al.[1] con…     

MODFLOW-Style parameters in underdetermined parameter estimation

In this article, we discuss the use of MODFLOW-Style parameters in the numerical codes MODFLOW_2005 and MODFLOW_2005-Adjoint for the definition of variables in the Layer Property Flow package. Parameters are a useful tool to represent aquifer properties in both codes and are the only option available in the adjoint version. Moreover, for overdetermined parameter estimation problems, the parameter approach for model input can make data input easier. We found that if each estimable parameter is defined by one parameter, the codes require a large computational effort and substantial gains in efficiency are achieved by removing logical comparison of character strings that represent the names and types of the parameters. An alternative formulation already available in the current implementation of the code can also alleviate the efficiency degradation due to character comparisons in the special case of distributed parameters defined through multiplication matrices. The authors also hope that lessons learned in analyzing the performance of the MODFLOW family codes will be enlightening to developers of other Fortran implementations of numerical codes.     

An assembly model for simulation of large-scale ground water flow and transport

When managing large-scale ground water contamination problems, it is often necessary to model flow and transport using finely discretized domains--for instance (1) to simulate flow and transport near a contamination source area or in the area where a remediation technology is being implemented; (2) to account for small-scale heterogeneities; (3) to represent ground water-surface water interactions; or (4) some combination of these scenarios. A model with a large domain and fine-grid resolution will need extensive computing resources. In this work, a domain decomposition-based assembly model implemented in a parallel computing environment is developed, which will allow efficient simulation of large-scale ground water flow and transport problems using domain-wide grid refinement. The method employs common ground water flow (MODFLOW) and transport (RT3D) simulators, enabling the solution of almost all commonly encountered ground water flow and transport problems. The basic approach partitions a large model domain into any number of subdomains. Parallel processors are used to solve the model equations within each subdomain. Schwarz iteration is applied to match the flow solution at the subdomain boundaries. For the transport model, an extended numerical array is implemented to permit the exchange of dispersive and advective flux information across subdomain boundaries. The model is verified using a conventional single-domain model. Model simulations demonstrate that the proposed model operated in a parallel computing environment can result in considerable savings in computer run times (between 50% and 80%) compared with conventional modeling approaches and may be used to simulate grid discretizations that were formerly intractable.     

准噶尔盆地南缘侏罗系泥岩黏土矿物组合及地球化学特征

对准噶尔盆地南缘玛纳斯河剖面泥岩中黏土矿物的组合类型、微观形貌和地球化学特征进行了综合分析,讨论了侏罗纪古气候、古环境演化过程。结果表明,泥岩中主要矿物为黏土矿物、石英、长石,以及少量的方解石、赤铁矿等。黏土矿物组合类型分为两类。一类为伊利石-蒙脱石混层矿物、伊利石、高岭石和绿泥石组合,主要分布在下侏罗统泥岩中;另一类为伊利石和蒙脱石组合,主要分布在上侏罗统泥岩中。扫描电子显微镜分析表明,黏土矿物结晶度较低,伊利石常呈丝状、叶片状,蒙脱石呈不规则板状分布在碎屑颗粒表面,片状伊利石/蒙脱石混层矿物存在于孔隙之中。其δCe为0.9~1.3,Eu呈负异常,La/Sc、La/Th、Th/Sc值则较高,指示源区母岩为长英质岩石类型。研究认为准南地区侏罗纪气候和沉积环境演化可划分为3个阶段:早侏罗世属于温暖湿润气候条件,以湖泊-三角洲沉积为主;中侏罗世早期属于温干偏湿润气候条件,以湖泊沉积为主;中侏罗世中后期至晚侏罗世属于相对较冷干旱的气候条件,属于宽浅氧化湖盆沉积环境类型。