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Modeling of karstic basins can provide a better understanding of the interactions between surface water and groundwater, a more accurate estimation of infiltrated water amount, and a more reliable water balance calculation. In this study, the hydrological simulation of a karstic basin in a semiarid region in Iran was performed in three different stages. In the first stage, the original SWAT model was used to simulate surface-water flow. Then, the SWAT-MODFLOW conjunctive model was implemented according to the groundwater characteristics of the study area. Finally, due to the karstic characteristics of the region and using the CrackFlow (CF) package, the SWAT-MODFLOW-CF conjunctive model was developed to improve the simulation results. The coefficient of determination (R2) and the Nash-Sutcliffe efficiency coefficient (NSE) as error evaluation criteria were calculated for the models, and their average values were 0.63 and 0.57 for SWAT, 0.68 and 0.61 for SWAT-MODFLOW, 0.73 and 0.7 for SWAT-MODFLOW-CF, respectively. Moreover, the mean absolute error (MAE) and root mean squared error (RMSE) of the calibration for groundwater simulation using the SWAT-MODFLOW model were 1.23 and 1.77 m, respectively. These values were 1.01 and 1.33 m after the calibration of the SWAT-MODFLOW-CF model. After modifying the CF code and keeping the seams and cracks open in both dry and wet conditions, the amount of infiltrated water increased and the aquifer water level rose. Therefore, the SWAT-MODFLOW-CF conjunctive model can be proposed for use in karstic areas containing a considerable amount of both surface water and groundwater resources.

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