Integrating process‐based flow and temperature models to assess riparian forests and temperature amelioration in salmon streams

The importance of riparian tree cover in reducing energy inputs to streams is increasingly recognized in schemes to mitigate climate change effects and protect freshwater ecosystems. Assessing different riparian management strategies requires catchment‐scale understanding of how different planting scenarios would affect the stream energy balance, coupled with a quantitative assessment of spatial patterns of streamflow generation. Here, we use the physically based MIKE SHE model to integrate simulations of catchment‐scale run‐off generation and in‐stream hydraulics with a heat transfer model. This was calibrated to model the spatio‐temporal distribution of hourly stream water temperature during warm low flow periods in a Scottish salmon stream. The model was explored as a “proof of concept” for a tool to investigate the effects of riparian management on high stream water temperatures that could affect juvenile Atlantic salmon. Uncertainty was incorporated into the assessment using the generalized likelihood uncertainty estimation approach. Results showed that by decreasing both the warming (daylight hours) and the cooling (night‐time hours) rates, forest cover leads to a reduction of the temperature range (with a delay of the time to peak by up to 2 hr) and can therefore be effectively used to moderate projected climate change effects. The modelling presented here facilitated the quantification of potential mitigating effects of alternative riparian management strategies and provided a valuable tool that has potential to be utilized as an evidence base for catchment management guidance.     

Nutrient budgets and trophic state in a hypersaline coastal lagoon: Lagoa de Araruama, Brazil

Lagoa de Araruama in the state of Rio de Janeiro, Brazil, is a hypersaline lagoon with salinity varying spatially from 45 to 56. We collected water samples during monthly cruises throughout the lagoon, and along the streams feeding the system, from April 1991 to March 1992. Nutrients and other water quality parameters exhibited great spatial and temporal variations. Mass balance calculations indicate large amounts of anthropogenic nutrient inputs. The data indicate that the lagoon currently is oligotrophic but is in a state of transition to become a mesotrophic system. Molar dissolved inorganic nitrogen:dissolved inorganic phosphorus (DIN/DIP) varied between 2.2:1 and 659:1 with a volume-weighted average of 22:1. The high DIN/DIP ratio contrasts with that found in nearby lagoons, suggesting that phytoplankton primary production is limited by phosphorus in Lagoa de Araruama. The major loss of DIP is apparently driven by biological assimilation and diagenic reactions in the sediments. Calculations indicate that the lagoon is slightly net autotrophic at +0.9 mol C m⁻² yr⁻¹. This suggests that the biomass of the primary producers is restricted by phosphorus availability. Phosphorus retention in the sediment and the hypersaline state of the lagoon prevent changes in autotrophic communities and the formation of eutrophic conditions.     

Nonlinear Force-Free Modeling of Coronal Magnetic Fields. II. Modeling a Filament Arcade and Simulated Chromospheric and Photospheric Vector Fields

We compare a variety of nonlinear force-free field (NLFFF) extrapolation algorithms, including optimization, magneto-frictional, and Grad – Rubin-like codes, applied to a solar-like reference model. The model used to test the algorithms includes realistic photospheric Lorentz forces and a complex field including a weakly twisted, right helical flux bundle. The codes were applied to both forced “photospheric” and more force-free “chromospheric” vector magnetic field boundary data derived from the model. When applied to the chromospheric boundary data, the codes are able to recover the presence of the flux bundle and the field’s free energy, though some details of the field connectivity are lost. When the codes are applied to the forced photospheric boundary data, the reference model field is not well recovered, indicating that the combination of Lorentz forces and small spatial scale structure at the photosphere severely impact the extrapolation of the field. Preprocessing of the forced photospheric boundary does improve the extrapolations considerably for the layers above the chromosphere, but the extrapolations are sensitive to the details of the numerical codes and neither the field connectivity nor the free magnetic energy in the full volume are well recovered. The magnetic virial theorem gives a rapid measure of the total magnetic energy without extrapolation though, like the NLFFF codes, it is sensitive to the Lorentz forces in the coronal volume. Both the magnetic virial theorem and the Wiegelmann extrapolation, when applied to the preprocessed photospheric boundary, give a magnetic energy which is nearly equivalent to the value derived from the chromospheric boundary, but both underestimate the free energy above the photosphere by at least a factor of two. We discuss the interpretation of the preprocessed field in this context. When applying the NLFFF codes to solar data, the problems associated with Lorentz forces present in the low solar atmosphere must be recognized: the various codes will not necessarily converge to the correct, or even the same, solution. On 07/07/2007, the NLFFF team was saddened by the news that Tom Metcalf had died as the result of an accident. We remain grateful for having had the opportunity to benefit from his unwavering dedication to the problems encountered in attempting to understand the Sun’s magnetic field; Tom had completed this paper several months before his death, leading the team through the many steps described above.     

The coast and shelf of east and northeast Brazil and material transport

The east and northeast Brazil shelves of the Southwest Atlantic harbor some unique conditions for tropical passive margins with western boundary currents. The narrow and open shelf is almost entirely covered by carbonate sediments due to little freshwater input and the coast is impacted by the South Equatorial Current (SEC). The wide Abrolhos bank of the east Brazil shelf, presents more diverse conditions, as it forms a physical barrier to the Brazil Current, and upwelling and land input become more significant. The main characteristics of the coast and shelf and findings on biogeochemical, sedimentation, and paleoceanographical processes, addressed by the Joint Oceanographic Projects (JOPS) campaigns, are summarized.     

Combined tidal velocity and duration asymmetries as a determinant of water transport and residual flow in Paranaguá Bay estuary

Net transports of water, salt and suspended particulate matter (SPM) for a cross-section in front of the Paranaguá Harbour (Paranaguá Bay, Brazil) are presented for eight distinct tidal cycles. Data include measurements over single spring and neap tidal cycles, during both wet and dry seasons. The main drive forces of circulation and SPM dynamics are identified. Advective transport dominated under moderate to high vertical salinity stratification and weak currents, while mixing processes dominated under well-mixed conditions generated by high currents and low freshwater input. Under partially mixed conditions, both advective and mixing processes were important. The tide-induced residual circulation dictated the magnitude and direction of residual currents and net transports of water and salt, but not of SPM transport. The SPM dynamics was intrinsically related to cyclical processes of erosion, resuspension and deposition driven by tidal currents. The turbulent mixing intensity conditioned the vertical mixing of SPM. Resuspension and vertical mixing were conspicuous in spring cycles, while the horizontal advection preponderated in the neaps. Lags between maximum currents and SPM peak concentrations occurred, with more pronounced hysteresis during ebb periods.     

Effects of the substratum on the formation of glacial tunnel valleys: an example from the Middle Pleistocene of the southern North Sea Basin

Tunnel valleys are elongated incisions formed by meltwater underneath ice sheets that rest on unlithified bed materials. The formation of tunnel valleys is commonly believed to be influenced by the properties of the preglacial bed; however, a detailed analysis of this relationship has not been performed to date. To determine whether tunnel‐valley location and morphology are controlled by the substratum, a 3D seismic survey was combined with lithological data from the Wadden Sea area in the Dutch sector of the southern North Sea Basin. This study shows that tunnel‐valley floors often coincide with seismic reflectors that mark lithological boundaries in the substratum, and that the location and depth of tunnel‐valley incision vary as a function of the properties of the substratum as expressed by lithological and geophysical‐log variations. Tunnel valleys are incised preferentially into fine‐grained layers, while the top of coarser‐grained units commonly coincide with the tunnel‐valley floor. These observations indicate that the geometry and orientation of tunnel valleys in the study area are controlled by contrasts in lithological properties of the bed. An explanation for the observed lithological control might lie in large water‐pressure differences over fine‐grained and impermeable layers along the flow‐path of subglacial meltwater flowing through the substratum, from areas with high pore‐water pressure towards areas with relatively low pressures in the vicinity of meltwater channels. These pressure differences might have been sufficient for the fracturing and fluidization of these layers. The concepts presented here have implications for existing genetic models and for the prediction of tunnel‐valley morphology in understudied areas.     

Sources, distribution and variability of hydrocarbons in total atmospheric suspended particulates of two Brazilian areas influenced by sugarcane burning

Polycyclic aromatic hydrocarbons (PAHs) and aliphatic hydrocarbons (AHs), such as n-alkanes, hopanes and steranes, were studied in relation to total atmospheric suspended particulates (TSP). Two representative Brazilian cities affected by sugarcane monoculture practices, with their rural surroundings, were chosen for the study. The cities chosen were Maceió (state of Alagoas, NE-Brazil) and Campos dos Goytacazes (state of Rio de Janeiro, SE-Brazil). Samples were collected during the harvesting period, when sugarcane burning occurs, and during the non-harvesting period. The aliphatic hydrocarbon fingerprints suggest a marked contribution of biogenic inputs and a slight contamination by aliphatics in areas far from the urban regions. In the urban areas, some petroleum contributions were observed, marked by the presence of hopanes (m/z 191) and steranes (m/z 217) in the mass chromatographic profiles. A marked increase in PAH concentrations was detected during the sugarcane burning periods, mainly at Campos dos Goytacazes. In a similar approach, n-alkane concentrations and BaP/nC₂₄ ratios were higher during the sugarcane burning periods. These increases were mainly associated with PAH production by the pyrogenic process in relation to aliphatic hydrocarbons with the same carbon numbers. The PAH isomeric ratios and the mixture of petrogenic and pyrogenic compounds of the TSP suggest atmospheric contamination for all regions as a whole, but the more elevated pyrogenic contribution during the sugarcane burning period implies that the impact of this activity is relevant.     

Changing hillslope and fluvial Holocene sediment dynamics in a Belgian loess catchment

Floodplain deposition is an essential part of the Holocene sediment dynamics of many catchments and a thorough dating control of these floodplain deposits is therefore essential to understand the driving forces of these sediment dynamics. In this paper we date floodplain and colluvial deposition in the Belgian Dijle catchment using accelerator mass spectrometric radiocarbon and optical stimulated luminescence dating. Relative mass accumulation curves for the Holocene were constructed for three colluvial sites and 12 alluvial sites. A database was constructed of all available radiocarbon ages of the catchment and this database was analysed using relative sediment mass accumulation rates and cumulative probability functions of ages and site‐specific sedimentation curves. Cumulative probability functions of ages were split into different depositional environments representing stable phases and phases of accelerated clastic deposition. The results indicate that there is an important variation between the different dated sites. After an initial stable early and middle Holocene phase with mainly peat growth in the floodplains, clastic sedimentation rates increased from 4000 BC on. This first phase was more pronounced and started somewhat earlier for colluvial deposits then for alluvial deposits. The main part of the Holocene deposits, both in colluvial and alluvial valleys, was deposited during the last 1 ka. The sedimentation pattern of the individual dated sites and the catchment‐wide pattern indicate that land use changes are responsible for the main variations in the Holocene sediment dynamics of this catchment, while the field data do not provide indications for a climatological influence on the sediment dynamics. Copyright © 2011 John Wiley & Sons, Ltd.     

Suspended matter transport in coral reef waters of the Abrolhos Bank, Brazil

The coral reef system of the Abrolhos Bank, Brazil, is located between 10 and 65 km off the coast. Suspended particulate matter between the coast and the inner arc of the reef was mainly composed of kaolinite clay and reworked fossil carbonate fragments, resuspended from nearshore shoals. Strong permanent and tidal alongshore currents in the nearshore channel together with the geomorphological configuration of the inner arc formed an efficient hydrodynamic and topographic barrier to offshore transport of land-derived material. Most of the material was being transported alongshore. Suspended particulate matter between the inner and outer arcs was dominated by carbonate shells, coral fragments, and needle-shaped biogenic opal, and the reef system was in large part being dominated by the oligotrophic waters of the Brazil Current.