The effect of extracellular polymers (EPS) on the proton adsorption characteristics of the thermophile Bacillus licheniformis S-86

This study investigated proton adsorption to an extracellular polymeric substance (EPS) producing bacterial strain, Bacillus licheniformis S-86, in order to characterise and quantify the contribution made by EPS to cell surface reactivity. Potentiometric titrations were conducted using both untreated cells and cells from which the EPS layer had been extracted. Surface-complexation modelling indicated the presence of four different functional groups in both untreated and EPS-free cells. These sites are assigned to phosphodiester, (pK_a 3.3–3.4), carboxylic (pK_a 5.3–5.4), phosphoryl/ (pK_a 7.4–7.5) and hydroxyl/amine (pK_a 9.9–10.1) type groups. The pK_a values for the four groups were very similar for untreated and EPS-free cells, indicating no qualitative difference in composition, but site concentrations in the untreated cells were statistically found to be significantly higher than those in the EPS-free cells for the pK_a 3.3–3.4 and pK_a 9.9–10.1 sites. Infrared analysis provided supporting evidence that site 2 is carboxylic in nature but did not reveal any difference in IR absorption between the native and EPS-free cells. Dissolved organic carbon (DOC) analysis conducted during this study indicated that DOC release by cells is significant, and that the EPS layer is the major contributor.     

Clinoform nucleation and growth in coarse-grained deltas, Loreto basin, Baja California Sur, Mexico: a response to episodic accelerations in fault displacement

We investigate the controls on the architecture of coarse‐grained delta progradational units (PUs) in the Pliocene Loreto basin (Baja California Sur, Mexico), a half‐graben located on the western margin of the Gulf of California. Dorsey et al. (1997b) argued that delta progradation and transgression cycles in the basin were driven by episodic fault‐controlled subsidence along the basin‐bounding Loreto fault. Here we test this hypothesis by a detailed analysis of the sedimentary architecture of 11 exceptionally well‐exposed, vertically arranged fluvio‐deltaic PUs, each of which shows lateral facies transition from proximal alluvial facies palaeo‐seaward into distal pro‐delta facies. Of these 11 PUs, seven exhibit a lateral transition from a shoal water to Gilbert‐delta facies associations as they are traced palaeo‐seaward. This transition is characterised by down‐transport development of foresets, which grow in height up to 35 m. Foreset units thicken in a basinward direction, with initially an oblique topset–foreset geometry that becomes increasingly sigmoidal. Each delta is capped by a shell bed that records drowning of the delta top. This systematic transition in delta architecture records increasing water depth through time during individual episodes of progradation. A mechanism that explains this transition is an accelerating rate of fault‐controlled subsidence during each PU. During episodes of low slip rate, shoal‐water deltas prograde across the submerged topography of the underlying delta unit. As displacement rate accelerates, increasing bathymetry at the delta front leads to steepening of foresets and initiation of Gilbert deltas. Subsequent delta drowning results from sediment starvation at the shoreline at high slip rates because of sediment trapping upstream. The observed delta architecture suggests that the long‐term (>100 kyr) history of slip on the Loreto fault was characterised by repetitive episodes of accelerating displacement accumulation. Such episodic fault behaviour is most likely to be because of variations in temporal and spatial strain partitioning between the Loreto fault and other faults in the Gulf of California. A physical explanation for the acceleration phenomenon involves evolving frictional properties on the episodically active Loreto fault.     

Carbohydrate sources in a coastal marine environment

Individual neutral sugars in sediments, sediment trap materials and major biological sources of a coastal marine environment (Dabob Bay, Washington State) were analyzed by capillary gas chromatography of equilibrated isomeric mixtures. Plankton, bacteria, and vascular plant tissues of different types yielded reproducible and biochemically consistent compositional patterns. These patterns, when expressed in simple parameters, allowed distinctions between marine and terrestrial carbohydrate sources as well as among the major different types of vascular plant tissues. Plankton and bacteria, due to their compositional diversity, were not further distinguishable by carbohydrate compositions alone. Carbohydrate compositions of Dabob Bay sediments and sediment trap materials, interpreted using source-indicator parameters, indicate a predominantly marine origin with increased relative input of terrestrially-derived carbohydrates in winter periods of low phytoplankton productivity. Both plankton and grasses are indicated as major carbohydrate sources during spring. Glucose yield enhancement factors, determined by comparative acid pretreatments, confirm the general predominance of α-cellulose-poor marine polysaccharides and increased levels of α-cellulose-rich vascular plant remains in winter sediment trap samples.     

The effect of maturation on the configurations of acyclic isoprenoid acids in sediments

Within a variety of sedimentary rocks of differing maturity, the configurations of a suite of acyclic isoprenoid acids have been examined by gas Chromatographic (in a few cases also by combined gas chromatography-mass spectrometry) analysis of their diastereoisomeric methyl and (?)-menthyl esters. The samples include the Eocene Messel (Germany) and Green River (U.S.) shales, the Permian Irati shale (Brazil) and a number of Lower Toarcian shales from the Paris Basin. The isomer distributions show that isomerisation occurs at the chiral centres with increasing maturation (to increase the number of isomers) and that the rate of isomerisation increases for centres (C-2,C-3) closest to the carboxyl group. These results suggest that adsorption of the carboxyl group to a catalyst surface may control the isomerisation rates by way of access to the catalyst.     

Towards a normative concept of settlements: the development process and theoretical and conceptual problems in the “Lower limb”

This paper critically evaluates theories of settlement pattern and change which have commonly been employed by geographers. Those discussed include central place, growth pole and modernization theories, as well as notions of settlements as a product of adaptation to environmental conditions, as central places, or as nodes of retail distribution. In all instances criticism centres on the applicability of those notions to the African rural scene. It is suggested that not only are most concepts inappropriate in this context, but they are also partial and historically relative. More suitable, normative concepts of settlements and settlement systems are suggested.     

Elucidation of the Alum Shale kerogen structure using a multi-disciplinary approach

The significance and validity of integrating data obtained from a variety of analytical techniques to understand, elucidate and model kerogen's complex chemical structure is reported here using degradative (open and closed system pyrolysis, chemical oxidation), non-degradative (¹³C CP/MAS NMR) and optical (incident white light and blue light) methods. Seven Cambrian Alum Shale samples, ranging in maturity from immature to post-mature with respect to petroleum generation, were studied and were chosen for their simple geological history, uniform organic matter type and high organic carbon content. The Alum Shale kerogens, which primarily consist of algal organic matter, liberate low molecular weight gaseous and aromatic compounds on pyrolysis and give mostly branched dicarboxylic acids on chemical oxidation. ¹³C NMR spectroscopy shows that the Alum Shale kerogens are anomalously rich in oxygen-bearing functional groups (such as C = O, ArCO, CHO, CH_xO), most of which apparently remain intact within the kerogen macro-molecule (KMM) through the diagenetic and catagenetic stages. Fragments released by different degradative techniques are quantified and the aromaticity (f_a), O/C and relative proportions of various carbon types estimated by ¹³C NMR. A synthesis of these data has allowed us to better understand the chemistry of the Alum Shale kerogen.     

The effect of maturation on the configuration of pristane in sediments and petroleum

The absolute stereochemistry of pristane in a sample of contemporary marine Zooplankton, Messel shale (Germany) and Djatibarang (Java) crude has been determined by gas Chromatographic methods. The relative stereochemistry in Irati shale (Brazil), Green River (U.S.) crude, Halibut (Australia) crude has also been determined, and confirmed for a sample of the Green River shale. The stereoisomer distributions indicate a loss of stereospecificity of the phytol-derived 6(R),10(S) pristane with increasing geological maturation. For example, the least mature geological sample, the Eocene Messel shale, contains solely the 6(R),10(S) isomer, whereas a mature sample, Djatibarang crude, contains 50% of the 6(R),10(S) isomer and 25% of each of the 6(R),10(R) and 6(S),10(S) isomers.     

Carbon isotope fractionation in phospholipid fatty acid biomarkers of bacteria and fungi native to an acid mine drainage lake

This study identifies isotope signatures associated with autotrophic and heterotrophic microbial communities that may provide a means to determine carbon cycling relationships in situ for acid mine drainage (AMD) sites. Stable carbon isotope ratios (δ¹³C) of carbon sources, bulk cells, and membrane phospholipids (PLFA) were measured for autotrophic and heterotrophic microbial enrichment cultures from a mine tailings impoundment in northern Ontario, Canada, and for pure strains of the sulfur oxidizing bacteria Acidithiobacillus ferrooxidans and Acidithiobacillus thiooxidans. The autotrophic enrichments had indistinguishable PLFA distributions from the pure cultures, and the PLFA cyc-C_19:0 was determined to be a unique biomarker in this system for these sulfur oxidizing bacteria. The PLFA distributions produced by the heterotrophic enrichments were distinct from the autotrophic distributions and the C_18:2 PLFA was identified as a biomarker for these heterotrophic enrichments. Genetic analysis (16S, 18S rRNA) of the heterotrophic cultures indicated that these communities were primarily composed of Acremonium fungi.Stable carbon isotope analysis revealed that bulk cellular material in all autotrophic cultures was depleted in δ¹³C by 5.6–10.9‰ relative to their atmospheric CO₂ derived carbon source, suggesting that inorganic carbon fixation in these cultures is carbon limited. Individual PLFA from these autotrophs were further depleted by 8.2–14.6‰ compared to the bulk cell δ¹³C, which are among the largest biosynthetic isotope fractionation factors between bulk cell and PLFA reported in the literature. In contrast, the heterotrophic bulk cells were not significantly fractionated in δ¹³C relative to their carbon source and heterotrophic PLFA ranged from 3‰ enriched to 4‰ depleted relative to the isotopic composition of their total biomass. These distinct PLFA biomarkers and isotopic fractionations associated with autotrophic and heterotrophic activity in this laboratory study provide potential biomarkers for delineating autotrophic and heterotrophic carbon cycling in AMD environments.     

The optical–infrared colour distribution of a statistically complete sample of faint field spheroidal galaxies

In hierarchical models, where spheroidal galaxies are primarily produced via a continuous merging of disc galaxies, the number of intrinsically red systems at faint limits will be substantially lower than in 'traditional' models where the bulk of star formation was completed at high redshifts. In this paper we analyse the optical–near-infrared colour distribution of a large flux-limited sample of field spheroidal galaxies identified morphologically from archival Hubble Space Telescope data. The I ₈₁₄− HK ' colour distribution for a sample jointly limited at I ₈₁₄<23 mag and HK '<19.5 mag is used to constrain their star formation history. We compare visual and automated methods for selecting spheroidals from our deep HST images and, in both cases, detect a significant deficit of intrinsically red spheroidals relative to the predictions of high-redshift monolithic-collapse models. However, the overall space density of spheroidals (irrespective of colour) is not substantially different from that seen locally. Spectral synthesis modelling of our results suggests that high-redshift spheroidals are dominated by evolved stellar populations polluted by some amount of subsidiary star formation. Despite its effect on the optical–infrared colour, this star formation probably makes only a modest contribution to the overall stellar mass. We briefly discuss the implications of our results in the context of earlier predictions based on models where spheroidals assemble hierarchically.