Extremely alkaline (pH > 12) ground water hosts diverse microbial community

Chemically unusual ground water can provide an environment for novel communities of bacteria to develop. Here, we describe a diverse microbial community that inhabits extremely alkaline (pH > 12) ground water from the Lake Calumet area of Chicago, Illinois, where historic dumping of steel slag has filled in a wetland. Using microbial 16S ribosomal ribonucleic acid gene sequencing and microcosm experiments, we confirmed the presence and growth of a variety of alkaliphilic beta-Proteobacteria, Bacillus, and Clostridium species at pH up to 13.2. Many of the bacterial sequences most closely matched those of other alkaliphiles found in more moderately alkaline water around the world. Oxidation of dihydrogen produced by reaction of water with steel slag is likely a primary energy source to the community. The widespread occurrence of iron-oxidizing bacteria suggests that reduced iron serves as an additional energy source. These results extend upward the known range of pH tolerance for a microbial community by as much as 2 pH units. The community may provide a source of novel microbes and enzymes that can be exploited under alkaline conditions.     

Estimation of recharge from floods in disconnected stream-aquifer systems

Stream-aquifer interaction has been the subject of much research for cases of good hydraulic connection (continuous saturated zone) between a river and an aquifer. Under these conditions, floods do not represent a very large net input to the aquifer because most of the water that enters the aquifer during the flood returns to the river when its stage recedes. The situation is different in disconnected stream-aquifer systems, where the streambed lies above the water level in the aquifer, thus preventing return flow from the aquifer. Under these conditions, floods may represent large, but hard to quantify, water inputs. Here, we present a methodology to estimate recharge from floods for disconnected stream-aquifer systems. Recharge is estimated as the product of a flood time function (dependent on the streamflow) and an unknown factor, which is obtained from calibrating a ground water flow model to aquifer heads. The approach can also benefit from concentration data, which can be very informative when river water concentrations vary over time. This methodology is applied to a field situation where recharge from river flooding is found to amount to nearly 15 million m(3)/year on the average, which represents 40% of the total aquifer inputs. Recharge from flooding helps explain major head recoveries, suggesting that basin water management programs should allow some floods to occur.     

A literature review on trace metals and organic compounds of anthropogenic origin in the Wider Caribbean Region

About 30 studies from the published literature were reviewed to determine the pollution status regarding heavy metals and organic compounds of the Wider Caribbean Region (WCR). The literature revealed that most studies were performed in the South and Central American Caribbean Region with sparse reports on the small island states. Collectively, the most frequently analyzed heavy metals were Pb, Cu, Zn, Fe, Cd, Ni, Mn and Cr while DDT and its metabolites were the most frequently reported organic pollutants. The samples which were analyzed vary in terms of sampling schemes, parameters and analytical techniques, as well as differences in data reporting presentation (i.e. dry weight versus wet weight, sediment fraction analyzed, or % lipids). These differences make meaningful comparisons of the available data very difficult. Furthermore, there is limited data available for most of these contaminants from the majority of nations in the WCR. Therefore, any attempt to create a regional scale assessment from contaminants data available in the open literature is limited by the scarcity of available information.     

Physical, chemical and microbiological characterization of the intertidal sediments of Pereque Beach, Guarujá (SP), Brazil

Physical and chemical characteristics of intertidal sediments and their relationships with bacteria and cyanobacteria were analyzed at four stations at Pereque Beach. Granulometric analysis showed that Pereque beach has sediment that is classified as sand. The lowest value of the sediment C/N rates (6.08), mainly due to a higher concentration of organic nitrogen, was found at the northern part of Pereque Beach, where organic matter of marine source was more prominent. In this area, density (9.6x10(6)cells cm(-3)), biomass (1992.04ngC cm(-3)) and activity of bacteria were higher than at the southern end. In contrast, cyanobacteria density varied from 2.0 to 4.0x10(5)cells cm(-3), with biomass and total chlorophyll a of the sediment being higher at the southern part, where there are water input from Pereque River and higher organic matter of continental origin. The variability in the microbial population is discussed in the light of the sediment granulometry, organic matter quality, fresh water inflow and pollution.     

Bacterial contribution to mitigation of iron and manganese in mangrove sediments

The Mandovi and Chapora are two tropical estuaries lying in close geographic proximity on the west coast of India. Seasonal changes in down core variation of Fe, Mn and Total Organic Carbon (TOC) in the mangrove sediments adjoining these estuaries were studied to assess their influence on some of the representative benthic bacteria belonging to heterotrophic and autotrophic groups. Heterotrophic bacteria (HB) cultured on different nutrient concentrations (0.01%, 0.1% and 25%) together with nitrifiers (NtB; representating autotroph) were chosen to assess the influence of the above-mentioned abiotic parameters on the former. The experimental site located along the Mandovi is under the influence of extensive ferromanganese ore mining, while the control site at Chapora is relatively free from such influences. Geoaccumulation index computed for Mandovi showed that sediments (0-10cm) were 'uncontaminated to moderately contaminated' by Fe during the pre monsoon and monsoon seasons, while in the post monsoon season the 4-10cm fraction was almost completely restored from contamination. Similar computations for Mn showed that in pre monsoon, sediments fell in the 'moderately contaminated' and 'moderately to strongly contaminated' categories, while in the monsoon and post monsoon seasons all the sections were 'Uncontaminated'. The difference observed in correlation between Fe and Mn with the various fractions of heterotrophs and nitrifiers indicated that though these two elements shared a similar chemistry in the environment, microbes involved in biogeochemical processes might prefer them differentially. The relationship between TOC and HB enumerated on 0.01% dilute nutrient agar remained at r=0.50, p<0.05 throughout the year. Hence, it could be apparently linked to their preferred concentration of organic carbon requirement. A relationship of r=0.61, p<0.01 between manganese concentration and heterotrophs recovered on different strengths of nutrient agar is suggestive of their response to the metal enrichment. They could thus contribute towards maintaining the level of Mn at par with reference levels at Chapora. A positive correlation between Mn with NtB (n=10, p<0.05, r=0.58) at the experimental site during the non-monsoon months is suggestive of the latter's contribution to regulation of the metal concentration in the sediment probably through anaerobic nitrification at the expense of manganese. The study therefore supports our hypothesis that both autochthonous autotrophs and heterotrophs work in tandem to mitigate concentration of Mn and related metals in mangrove sediments.     

An investigation into intersex amphipods and a possible association with aquaculture

The amphipod, Echinogammarus marinus, is common in sheltered coastal inlets, such as estuaries and sea lochs, in Scotland and exhibits increased levels of intersex in some contaminated areas. Sea lochs are commonly the location for coastal aquaculture development, and some chemicals used in fish-farming are specifically designed to target the crustacean nervous system. Therefore it was hypothesised that these chemicals may also affect neuro-endocrine pathways, causing morphological and reproductive abnormalities in non-target Crustacea. Based upon this hypothesis, Echinogammarus marinus amphipods from two different Scottish sea lochs containing salmon farms were investigated. Morphology, intersexuality, and the incidence of microsporidian parasites were recorded at sites close and at distance from fish-farms. Results suggest a higher incidence of intersexuality at sites within sea lochs, comparable to that observed in industrially contaminated sites elsewhere in Scotland. The data suggest that fish farming activity may influence the observed distributions of intersexuality within lochs. Intersex specimens were more likely to be infected by microsporidian parasites than non-intersex specimens. Normal females were found more likely to be infected by microsporidian parasites at sites associated with high intersexuality, suggesting the parasite as the probable feminiser. The cause(s) for the observed patterns of intersexuality are unclear, although suggestions relating to discharges from fish farms are discussed.     

Neuroendocrine disruption in Mya arenaria clams during gametogenesis at sites under pollution stress

This study examined the neuroendocrine status of clams on intertidal mud flats in the St. Lawrence Estuary and Saguenay Fjord areas during late gametogenesis. The impact of pollution was determined by a test battery of early stress markers (metallothioneins, heme levels, glutathione S-transferase activity), tissue damage (lipid peroxidation and DNA damage) and morphologic characteristics (age, soft-tissue weight ratio and growth index). Neuroendocrinal status was examined by tracking serotonin and dopamine metabolism, monoamine adenylate cyclase activity in synaptosomes, monoamine oxidase and arachidonate cyclooxygenase activities in relation to gametogenetic activity: pyrimidine synthesis, (aspartate transcarbamoylase activity or ATC), vitellogenin-like proteins and gonado-somatic index. The results show that clam soft tissue weights were reduced at sites close to harbours and higher at sites near domestic wastewater outfalls. The age-to-length ratio of clams was generally higher at impacted sites, suggesting reduced growth. The biomarkers of stress or damage confirmed that oxidative stress, DNA damage, metallothioneins and glutathione S-transferase activity were significantly increased at varying degrees, at the polluted sites. Vitellogenin-like proteins and gametogenetic activity were significantly increased at sites influenced by domestic wastewaters. Furthermore, the clams were still in active gametogenesis and not ready for spawning, as indicated by the concordance of the serotonin/dopamine ratio with vitellogenin-like proteins and pyrimidine synthesis. However, gonadal cyclooxygenase activity was increased at polluted sites and significantly correlated with most of the stress biomarkers, suggesting that the clams were in a state of inflammation rather than at the spawning stage. Finally, a multivariate analysis revealed that the sites were readily discriminated with high efficiency (>71%) and that both neuroendocrine physiological markers and stress responses were identified as the major components, thus explaining the global physiological response of the clams. We conclude that the effects of pollution compromise the clams' health status and that the initiation of gametogenesis in environments contaminated by municipal wastewaters or harbours contributes to the toxic effects of pollution.     

Exoplanet status report: Observation, characterization and evolution of exoplanets and their host stars

After the discovery of more than 400 planets beyond our Solar System, the characterization of exoplanets as well as their host stars can be considered as one of the fastest growing fields in space science during the past decade. The characterization of exoplanets can only be carried out in a well coordinated interdisciplinary way which connects planetary science, solar/stellar physics and astrophysics. We present a status report on the characterization of exoplanets and their host stars by reviewing the relevant space- and ground-based projects. One finds that the previous strategy changed from space mission concepts which were designed to search, find and characterize Earth-like rocky exoplanets to: A statistical study of planetary objects in order to get information about their abundance, an identification of potential target and finally its analysis. Spectral analysis of exoplanets is mandatory, particularly to identify bio-signatures on Earth-like planets. Direct characterization of exoplanets should be done by spectroscopy, both in the visible and in the infrared spectral range. The way leading to the direct detection and characterization of exoplanets is then paved by several questions, either concerning the pre-required science or the associated observational strategy.     

Long-Term Trends in Intertidal and Subtidal Benthic Communities in Response to Water Quality Improvement Measures

Long-term monitoring studies are needed to understand changes in ecosystem status when restoration measures are implemented. A long-term data series (1996–2007) of the Tagus estuary (Portugal) intertidal and subtidal benthic communities was collected in a degraded area where mitigation measures were implemented. Multivariate analysis was used to analyze spatial and temporal patterns in benthic community composition and trends in five benthic community metrics (i.e., taxonomic richness, density, biomass, Shannon–Wiener diversity and the AMBI index) were also examined. The results revealed a clear separation between intertidal and subtidal assemblages, although they had 50% of taxa in common, including the most abundant. Significant positive trends were found for all metrics showing that both intertidal and subtidal communities responded to the restoration measures implemented. Nevertheless, biotic indices need some adaptation before being universally applied to intertidal and subtidal habitats.     

On the water and energy cycles in the Tropics

The water and energy cycles are major elements of the Earth climate. These cycles are especially active in the intertropical belt where satellites provide the most suitable observational platform. The history of Earth observations of the water cycle and of the radiation budget viewed from space reveals that the fundamental questions from the early times are still relevant for today's research. The last 2 decades have seen a number of milestones regarding the documentation of rainfall, mesoscale convective systems (MCS), water vapour and radiation at the top of the atmosphere (TOA). Beyond dedicated missions that provided enhanced characterizations of some elements of the atmospheric water cycle and field campaigns that allowed the gathering of validation data, the advent of the long record of meteorological satellites lead to new questioning on the homogenisation of the data time series, etc. The use of this record to document the tropical climate brought new results of the distribution of humidity and reinforced the understanding of some robust features of the African monsoon. Challenges for the immediate future concerns the deepening of the understanding of the role of cloud systems in the monsoon circulation, the downscaling of the documentation of the water and energy cycle at the scale of these cloud systems, the research of better adequation between the users and the satellite estimate of rainfall and finally a much needed methodological effort to build exploitable time series for the estimation of climatic trends in the water and energy cycle in the Tropics. The required observations to address these challenges are rapidly presented with emphasis on the upcoming Megha-Tropiques (MT) mission.