Investigating a Hierarchy of Eulerian Closure Models for Scalar Transfer Inside Forested Canopies

Modelling the transfer of heat, water vapour, and CO₂ between the biosphere and the atmosphere is made difficult by the complex two-way interaction between leaves and their immediate microclimate. When simulating scalar sources and sinks inside canopies on seasonal, inter-annual, or forest development time scales, the so-called well-mixed assumption (WMA) of mean concentration (i.e. vertically constant inside the canopy but dynamically evolving in time) is often employed. The WMA eliminates the need to model how vegetation alters its immediate microclimate, which necessitates formulations that utilize turbulent transport theories. Here, two inter-related questions pertinent to the WMA for modelling scalar sources, sinks, and fluxes at seasonal to inter-annual time scales are explored: (1) if the WMA is to be replaced so as to resolve this two-way interaction, how detailed must the turbulent transport model be? And (2) what are the added predictive skills gained by resolving the two-way interaction vis-à-vis other uncertainties such as seasonal variations in physiological parameters. These two questions are addressed by simulating multi-year mean scalar concentration and eddy-covariance scalar flux measurements collected in a Loblolly pine (P. taeda L.) plantation near Durham, North Carolina, U.S.A. using turbulent transport models ranging from K-theory (or first-order closure) to third-order closure schemes. The multi-layer model calculations with these closure schemes were contrasted with model calculations employing the WMA. These comparisons suggested that (i) among the three scalars, sensible heat flux predictions are most biased with respect to eddy-covariance measurements when using the WMA, (ii) first-order closure schemes are sufficient to reproduce the seasonal to inter-annual variations in scalar fluxes provided the canonical length scale of turbulence is properly specified, (iii) second-order closure models best agree with measured mean scalar concentration (and temperature) profiles inside the canopy as well as scalar fluxes above the canopy, (iv) there are no clear gains in predictive skills when using third-order closure schemes over their second-order closure counterparts. At inter-annual time scales, biases in modelled scalar fluxes incurred by using the WMA exceed those incurred when correcting for the seasonal amplitude in the maximum carboxylation capacity (V _{cmax, 25}) provided its mean value is unbiased. The role of local thermal stratification inside the canopy and possible computational simplifications in decoupling scalar transfer from the generation of the flow statistics are also discussed.

“The tree, tilting its leaves to capture bullets of light; inhaling, exhaling; its many thousand stomata breathing, creating the air”. Ruth Stone, 2002, In the Next Galaxy

     

A comparison of unsupervised segmentation parameter optimization approaches using moderate- and high-resolution imagery

Unsupervised segmentation optimization methods have been proposed to aid in selecting an “optimal” set of scale parameters quickly and objectively for object-based image analysis. The goal of this study was to qualitatively assess three unsupervised approaches using both moderate-resolution Landsat and high-resolution Ikonos imagery from two study sites with different landscape characteristics to demonstrate the continued need for analyst intervention during the segmentation process. The results demonstrate that these methods selected parameters that were optimal for the scene which varied with method, image type, and site complexity. Several takeaways from this exercise are as follows: (1) some methods do not work as intended, (2) single-scale unsupervised optimization procedures cannot be expected to properly segment all the features of interest in the image every time, and (3) many multi-scale approaches require subjectively chosen weights or thresholds or additional testing to determine those values that meet the objective. Visual inspection of segmentation results is still required in order to assess over and under-segmentation as no method can be expected to select the best parameters for land cover classifications every time. These approaches should instead be used to narrow down parameter values in order to save time.     

Integrating Stalagmite, Vertebrate, and Pollen Sequences to Investigate Holocene Vegetation and Climate Change in the Southern Midwestern United States

Speleothem carbon and oxygen isotopic records from Onondaga Cave, south-central Missouri, and Beckham Creek Cave, north-central Arkansas, are compared with the Cupola Pond and Oldfield Swamp pollen series from southeastern Missouri and the Rodgers Shelter and Modoc Shelter vertebrate biostratigraphic sequences from central Missouri and southwestern Illinois. Similar, and roughly contemporaneous, shifts between deciduous forest and steppe indicators throughout the Holocene are revealed in each database. These independent proxies record steppe conditions between approximately 9000 and 1500 cal yr B.P. A shift toward lighter speleothem carbon may reflect a change from warm and dry to cool and dry conditions between 4500 and 3000 yr B.P. The sensitive response of speleothem δ¹³C to changes in vegetation emphasizes their importance as paleoclimate records in an area containing few other millenial-scale climate proxies.     

History of scoria-cone eruptions on the eastern shoulder of the Kenya–Tanzania Rift revealed in the 250-ka sediment record of Lake Chala near Mount Kilimanjaro

Reconstructions of the timing and frequency of past eruptions are important to assess the propensity for future volcanic activity, yet in volcanic areas such as the East African Rift only piecemeal eruption histories exist. Understanding the volcanic history of scoria-cone fields, where eruptions are often infrequent and deposits strongly weathered, is particularly challenging. Here we reconstruct a history of volcanism from scoria cones situated along the eastern shoulders of the Kenya–Tanzania Rift, using a sequence of tephra (volcanic ash) layers preserved in the ~250-ka sediment record of Lake Chala near Mount Kilimanjaro. Seven visible and two non-visible (crypto-) tephra layers in the Lake Chala sequence are attributed to activity from the Mt Kilimanjaro (northern Tanzania) and the Chyulu Hills (southern Kenya) volcanic fields, on the basis of their glass chemistry, textural characteristics and known eruption chronology. The Lake Chala record of eruptions from scoria cones in the Chyulu Hills volcanic field confirms geological and historical evidence of its recent activity, and provides first-order age estimates for seven previously unknown eruptions. Long and well-resolved sedimentary records such as that of Lake Chala have significant potential for resolving regional eruption chronologies spanning hundreds of thousands of years.     

<Emphasis Type="Italic">Spartina alterniflora</Emphasis> Biomass Allocation and Temperature: Implications for Salt Marsh Persistence with Sea-Level Rise

To predict the impacts of climate change, a better understanding is needed of the foundation species that build and maintain biogenic ecosystems. Spartina alterniflora Loisel (smooth cordgrass) is the dominant salt marsh-building plant along the US Atlantic coast. It maintains salt marsh elevation relative to sea level by the accumulation of aboveground biomass, which promotes sediment deposition and belowground biomass, which accretes as peat. Peat accumulation is particularly important in elevation maintenance at high latitudes where sediment supply tends to be limited. Latitudinal variation in S. alterniflora growth was quantified in eight salt marshes from Massachusetts to South Carolina. The hypothesis that allocation to aboveground and belowground biomass is phenotypically plastic was tested with transplant experiments among a subset of salt marshes along this gradient. Reciprocal transplants revealed that northern S. alterniflora decreased allocation to belowground biomass when grown in the south. Some northern plants also died when moved south, suggesting that northern S. alterniflora may be stressed by future warming. Southern plants that were moved north showed phenotypic plasticity in biomass allocation, but no mortality. Belowground biomass also decomposed more quickly in southern marshes. Our results suggest that warming will lead northern S. alterniflora to decrease belowground allocation and that belowground biomass will decompose more quickly, thus decreasing peat accumulation. Gradual temperature increases may allow for adaptation and acclimation, but our results suggest that warming will lower the ability of salt marshes to withstand sea-level rise.     

Paleoflood events recorded by speleothems in caves

Speleothems are usually composed of thin layers of calcite (or aragonite). However, cemented detrital materials interlayered between laminae of speleothemic carbonate have been also observed in many caves. Flowstones comprising discontinuous carbonate layers form due to flowing water films, while flood events introduce fluviokarstic sediments in caves that, on occasion, are recorded as clayey layers inside flowstones and stalagmites. This record provides a potential means of understanding the frequency of palaeofloods using cave records. In this work, we investigate the origin of this type of detrital deposit in El Soplao Cave (Northern Spain). The age of the lowest aragonite layer of a flowstone reveals that the earliest flood period occurred before 500 ka, though most of the flowstone formed between 422 +69/‐43 ka and 400 +66/‐42 ka. This suggests that the cave was periodically affected by palaeoflood events that introduced detrital sediments from the surface as a result of occasional extreme rainfall events, especially at around 400 ka. The mineralogical data enable an evolutionary model for this flowstone to be generated based on the alternation of flood events with laminar flows and carbonate layers precipitation that can be extrapolated to other caves in which detrital sediments inside speleothems have been found. Copyright © 2014 John Wiley & Sons, Ltd.     

Exploring the influence of biofilm on short‐term expansion and contraction of supratidal rock: an example from the Mediterranean

Previous geomorphological investigations using the traversing micro‐erosion meter (TMEM) have identified daily and hourly contractions and expansions of littoral rock on a range of lithologies. While organic influences on these patterns have been inferred, this has rarely been tested in a controlled way. Here, a TMEM was used to measure micro‐scale (<mm) topographic changes on supratidal limestone of the Massif des Calanques, southern France. Four TMEM monitoring sites (each 64 cm²) were set up in total, two in the Calanque de Morgiou and two in the Presqu'ile de Cassis. On both shores one TMEM bolt site was positioned on bare rock and the other on colonized rock. TMEM data were collected and the surface micro‐topography mapped for each site at two‐hourly intervals from early morning to late evening across one day in mid‐summer. Significant relative expansion and contraction was observed between measurement periods at all four sites, regardless of biofilm colonization (P < 0.001 in all instances), and sometimes between adjacent zones on the rock surface (at a scale of centimetres). Rock with and without biofilm behaved broadly similarly, but the magnitude of topographic change varied: average movement from one interval to the next was 0.03 mm on bare sites and 0.06 mm on biofilm‐colonized sites. As expected, patterns of surface change related largely to insolation, with greatest movement occurring in the morning and evening when thermal gradients were steepest. Interestingly, the presence of a biofilm intensified rock expansion, but delayed surface response to microclimatic variability. We largely attribute this effect to biofilm influences on surface albedo, and hypothesize that episodes of contraction and expansion are superimposed onto longer (annual to decadal) episodes of surface movement and downwearing. Short‐term TMEM studies therefore need to be coupled with longer‐term seasonal and annual measurements to improve understanding of rock surface dynamics. Copyright © 2014 John Wiley & Sons, Ltd.     

Formation of radical species in photolyzed CH4:N2 ices

We report photochemical studies of thin cryogenic ice films composed of N₂, CH₄ and CO in ratios analogous to those on the surfaces of Neptune’s largest satellite, Triton, and on Pluto. Experiments were performed using a hydrogen discharge lamp, which provides an intense source of ultraviolet light to simulate the sunlight-induced photochemistry on these icy bodies. Characterization via infrared spectroscopy showed that C₂H₆ and C₂H₂, and HCO are formed by the dissociation of CH₄ into H, CH₂ and CH₃ and the subsequent reaction of these radicals within the ice. Other radical species, such as C₂, , CN, and CNN, are observed in the visible and ultraviolet regions of the spectrum. These species imply a rich chemistry based on formation of radicals from methane and their subsequent reaction with the N₂ matrix. We discuss the implications of the formation of these radicals for the chemical evolution of Triton and Pluto. Ultimately, this work suggests that , CN, HCO, and CNN may be found in significant quantities on the surfaces of Triton and Pluto and that new observations of these objects in the appropriate wavelength regions are warranted.