Bias estimation and correction for triangle-based surface area calculations

The calculation of surface area is meaningful for a variety of space-filling phenomena, e.g., the packing of plants or animals within an area of land. With Digital Elevation Model (DEM) data we can calculate the surface area by using a continuous surface model, such as by the Triangulated Irregular Network (TIN). However, just as the triangle-based surface area discussed in this paper, the surface area is generally biased because it is a nonlinear mapping about the DEM data which contain measurement errors. To reduce the bias in the surface area, we propose a second-order bias correction by applying nonlinear error propagation to the triangle-based surface area. This process reveals that the random errors in the DEM data result in a bias in the triangle-based surface area while the systematic errors in the DEM data can be reduced by using the height differences. The bias is theoretically given by a probability integral which can be approximated by numerical approaches including the numerical integral and the Monte Carlo method; but these approaches need a theoretical distribution assumption about the DEM measurement errors, and have a very high computational cost. In most cases, we only have variance information on the measurement errors; thus, a bias estimation based on nonlinear error propagation is proposed. Based on the second-order bias estimation proposed, the variance of the surface area can be improved immediately by removing the bias from the original variance estimation. The main results are verified by the Monte Carlo method and by the numerical integral. They show that an unbiased surface area can be obtained by removing the proposed bias estimation from the triangle-based surface area originally calculated from the DEM data.     

Molecular characterization of sulfate-reducing bacteria community in surface sediments from the adjacent area of Changjiang Estuary

Sulfate-reducing bacteria (SRB), which obtain energy from dissimilatory sulfate reduction, play a vital role in the carbon and sulfur cycles. The dissimilatory sulfite reductase (Dsr), catalyzing the last step in the sulfate reduction pathway, has been found in all known SRB that have been tested so far. In this study, the diversity of SRB was investigated in the surface sediments from the adjacent area of Changjiang Estuary by PCR amplification, cloning and sequencing of the dissimilatory sulfite reductase beta subunit gene (dsrB). Based on dsrB clone libraries constructed in this study, diversified SRB were found, represented by 173 unique OTUs. Certain cloned sequences were associated with Desulfobacteraceae, Desulfobulbaceae, and a large fraction (60%) of novel sequences that have deeply branched groups in the dsrB tree, indicating that novel SRB inhabit the surface sediments. In addition, correlations of the SRB assemblages with environmental factors were analyzed by the linear model-based redundancy analysis (RDA). The result revealed that temperature, salinity and the content of TOC were most closely correlated with the SRB communities. More information on SRB community was obtained by applying the utility of UniFrac to published dsrB gene sequences from this study and other 9 different kinds of marine environments. The results demonstrated that there were highly similar SRB genotypes in the marine and estuarine sediments, and that geographic positions and environmental factors influenced the SRB community distribution.     

Tide and current observations in the central Chukchi Sea during the summer of 2012

Current data from a moored Acoustic Doppler Current Profiler(ADCP) deployed at 69?30.155′N,169?00.654′W in the central Chukchi Sea during 2012 summertime is analyzed in the present paper.Characteristics of tidal and residual currents are ob-tained with Cosine-Lanczos filter and cross-spectral analyses.The main achievements are as follows:1) Along with the local inertial frequency of 12.8 h,two other peaks at ~12-h and ~10-d dominate the time series of raw velocity;2) The M_2 dominates the 6 resolved tide constituents with significant amplitude variations over depth and the ratios of current speed of this constituent to that of the total tidal current are 54% and 47% for u and v components,respectively.All the resolved tidal constituents rotate clockwise at depth with the exception of MM and O1.The constituents of M_2 and S_2 with the largest major semi-axes are similar in eccentricity and orientation at deeper levels;3) The maximum of residual currents varies in a range of 20–30 cms~(-1) over depth and the current with lower velocities flow more true north with smaller magnitudes compared to the current in surface layer.The ~10 d fluctuation of residual current is found throughout the water column and attributed to the response of current to the local wind forcing,with an approximate 1.4 d lag-time at the surface level and occurring several hours later in the lower layer;4) Mean residual currents flow toward the north with the magnitudes smaller than 7 cms~(-1) in a general agreement with previous studies,which suggests a relatively weaker but stable northward flow indeed exists in the central Chukchi Sea.     

Two new species of the genus <Emphasis Type="Italic">Cobitis</Emphasis> Linnaeus (Teleostei: Cobitidae) from southern China

Two new species of the genus Cobitis from southern China, C. hereromacula from the Luohe River in Guangdong Province and C. baishagensis from the Nandujiang River in Hainan Province, are described and illustrated here. C. hereromacula can be distinguished from its congeners by possessing the following combination of characteristics: absence of the second and third pigmentary zones of Gambetta; 13–16 oval blotches on the dorsum and 10–13 vertical, elongated triangular blotches below the midlateral line with more than 20 vertical dark brown bars between them; 6–7 narrow rows of dark spots on the caudal fin; a vertical oval spot smaller than the eye diameter on the upper part of the caudal peduncle; pointed mental lobes of the lower lip pointed with a slightly filiform tip; one slender and long needle-shaped lamina circularis at the base of the first branched ray of the male pectoral fins. C. baishagensis can be distinguished from its congeners by the fourth Gambetta zone being covered by 10–12 transverse elongated blotches; 4–5 narrow rows of dark spots on the caudal fin; a vertical blotch smaller than the eye diameter on the upper part of the caudal peduncle; males with a slender and long needle-shaped lamina circularis at the second branched pectoral fin ray in males; large scales with a slightly large focal zone; undeveloped mental lobes with a lower lip that does not end posteriorly in a filiform tip.     

Phylogenetic diversity of culturable bacteria in surface seawater from the Drake Passage,Antarctica

The Drake Passage is located between the Antarctic Peninsula and Tierra del Fuego in the south of South America. Surface seawater samples were collected at seven sites in the Drake Passage during the austral summer of 2012. The 16S rRNA sequences were analyzed from 187 isolated bacterial strains. Three phyla, 29 genera and 56 species were identified. The three phyla were Actinobacteria, Firmicutes and Proteobacteria; the Proteobacteria included α-Proteobacteria, β-Proteobacteria and γ-Proteobacteria. γ-Proteobacteria, Actinobacteria and Firmicutes were the dominant class or phyla in terms of quantity and species. Gram-positive bacteria (Actinobacteria and Firmicutes) accounted for 57.8% of all types identified. There were nine dominant genera, including Curtobacterium, Staphylococcus, and Halomonas, and 14 dominant species including Curtobacterium flaccumfaciens, Curtobacterium pusillum, and Staphylococcus sciuri. Of the strains identified, 87.2% were catalase positive or weakly positive.     

鄂尔多斯盆地南部地区延长组深水沉积构造特征及地质意义

鄂尔多斯盆地南部地区上三叠统延长组长7段发育有典型的重力流沉积。对野外露头剖面进行大量调查研究,发现研究区重力流沉积发育丰富的沉积构造,底层面构造、软沉积变形构造是主要的两种类型。这种深水沉积构造组合能够很好地揭示研究区广泛发育的一定坡度背景下深水重力流沉积体系。滑移-滑塌沉积、砂质碎屑流沉积、浊流沉积是研究区发育最为广泛的深水重力流沉积类型,滑移-滑塌及软沉积变形构造为触发机制沉积响应,底层面构造为砂质碎屑流沉积及浊流沉积响应。综合分析研究区地层发育的大量凝灰岩夹层、深水泥岩中发育的植物碎屑、深水砂岩中发育的大量浅黄色泥砾等沉积特征,认为地震、火山喷发及季节性洪水为研究区深水重力流沉积最有利的触发因素。     

Preparation of integrative cubes as a novel biological permeable reactive barrier medium for the enhancement of in situ aerobic bioremediation of nitrobenzene-contaminated groundwater

Recent studies have indicated that in situ aerobic bioremediation is one of the most effective methods for remediating groundwater contaminated with nitrobenzene (NB). Aerobic bioremediation is largely dependent on the maintenance of adequate dissolved oxygen (DO) levels in the groundwater. Traditional in situ aeration has various disadvantages, such as high operational costs and nonuniform aeration. In this study, integrative cubes were prepared and utilized as a novel biological permeable reactive barrier (bio-PRB) medium to enhance the aerobic bioremediation of NB-contaminated groundwater. The results revealed an NB removal rate greater than 98.68% after 15–20 days of continuous oxygen release from the bio-PRB medium. DO concentrations reached 8.0 mg/L during treatment, and NB-degrading bacteria were able to tolerate a range of pH conditions. This multifaceted bio-PRB medium can simultaneously adsorb and biodegrade NB, release oxygen, and neutralize the pH with phosphate buffer. The results of this study suggest that this bio-PRB medium represents a highly effective in situ bioremediation method for NB-contaminated groundwater.