Graph-assisted landscape monitoring

The structure of computational spatial analysis has mostly built on data lattices inherited from cartography, where visualization of information takes priority over analysis. In these framings, spatial relationships cannot easily be encoded into traditional data lattices. This hinders spatial analysis that emphasizes how interactions among spatial entities reflect mutual inter-relationships. This paper explores how graph theoretic principles can support spatiotemporal analysis by enabling assessment of spatial and temporal relationships in landscape monitoring.     

Heliophysics Event Knowledgebase for?the?Solar Dynamics Observatory (SDO) and Beyond

The immense volume of data generated by the suite of instruments on the Solar Dynamics Observatory (SDO) requires new tools for efficient identifying and accessing data that is most relevant for research. We have developed the Heliophysics Events Knowledgebase (HEK) to fill this need. The HEK system combines automated data mining using feature-detection methods and high-performance visualization systems for data markup. In addition, web services and clients are provided for searching the resulting metadata, reviewing results, and efficiently accessing the data. We review these components and present examples of their use with SDO data.     

Effects of salinity on anatomical features and physiology of a semi-mangrove plant Myoporum bontioides

The effect of different concentrations of NaCl, 0, 100, 200, 300 and 400 mM, on the anatomical features and physiology of Myoporum bontioides was investigated. The photosynthetic rates (Pn) were significantly reduced by salt stress, with the lowest values at 400 mM NaCl. The content of malondialdehyde (MDA), proline and soluble sugar, as well as the activities of peroxidase (POD) and catalase (CAT) increased at the beginning, but became similar to the control as the experiment proceeded. The NaCl effect on superoxide dismutase (SOD) was different from the other parameters, with a significant reduction at 400 mM NaCl at Day 7. Salt glands were found in both upper and lower epidermis, and the ratios of the thickness of palisade to spongy mesophyll tissues increased with NaCl concentrations. The medullary ray was clearly damaged by NaCl at levels of 200 and 300 mM. These results demonstrated that M. bontioides could adapt to a relatively low salinity, and was not a halophilous species.     

Structure and function of soil microbial community in artificially planted Sonneratia apetala and S. caseolaris forests at different stand ages in Shenzhen Bay,China

The present study examined the relationships between soil characteristics, microbial community structure and function in the forests artificially planted with exotic Sonneratia apetala at stand ages of 1-, 2-, 7-, 10- and 14-years and Sonneratia caseolaris of 1-, 4-, 7-, 10- and 14-years in Futian National Nature Reserve, Shenzhen Bay, China. The 7-years old forests of both Sonneratia species reached peak growth and had the highest content of nitrogen and phosphorus, enzymatic activities, including dehydrogenase, cellulase, phosphatase, urease and ß-glucosidase, except arylsulphatase which increased continuously with stand ages. The microbial community structure reflected by phospholipid fatty acid (PLFA) profiles also reached the maximum value in the 7-years old forests and soil bacterial PLFAs in both forests were significantly higher than fungal PLFAs. The canonical correlation analysis revealed that differences in microbial structural variables were significantly correlated to the differences in their functional variables, and the highest correlation was found between the soil enzymatic activities and the content of carbon and nitrogen.     

Effects of hypoxia on biofilms and subsequently larval settlement of benthic invertebrates

Biofilms on submerged surfaces are important in determining larval settlement of most marine benthic invertebrates. We investigated if exposure of biofilms to hypoxia would alter the larval settlement pattern and result in a shift in benthic invertebrate community structure in the field. Biofilms were first exposed to hypoxia or normoxia in laboratory microcosms for 7 days, and then deployed in the field for another 7 days to allow for larval settlement and recruitment to occur. Using terminal-restriction fragment length polymorphism of the 16S rRNA gene, this study showed that hypoxia altered the biofilm bacterial community composition, and the difference between the hypoxic and normoxic treatments increased with the time of exposure period. This study also demonstrated significantly different benthic invertebrate community structures as a result of biofilm exposure to hypoxia and that the hypoxic and normoxic treatments were dominated by Hydroides sp. and Folliculina sp., respectively.     

Potential climate change effects on warm-season livestock production in the Great Plains

Projected production responses were derived for confined swine and beef and for milk-producing dairy cattle based on climate change projections in daily ambient temperature. Milk production from dairy cattle and the number of days to grow swine and beef cattle were simulated. Values were obtained for three central United States transects and three climate scenarios which were based on projected mean daily ambient temperatures associated with a baseline, doubling, and tripling of atmospheric greenhouse gas (CO₂) levels for the period June 1 to October 31. For swine, a slight northwest to southeast gradient is evident. Transect 1 (west side) shows no losses under the doubling scenario and losses up to 22.4% under the tripling scenario. Transect 3 (east side) displays losses of over 70% under the tripling scenario. For beef, positive benefits were simulated in Transect 1 with increasing temperatures, although a northwest to southeast gradient was also evident. For dairy, no positive benefits in milk production were found due to climate effects. Projected production declines ranged from 1% to 7.2%, depending on location. However, ranges in predicted differences were less than those simulated for beef and swine. These simulations suggest regional differences in animal production due to climate change will be apparent. For small changes in climate conditions, animals will likely be able to adapt, while larger changes in climate conditions will likely dictate that management strategies be implemented. Exploration of the effects of climate changes on livestock should allow producers to adjust management strategies to reduce potential impact and economic losses due to environmental changes.     

Seafloor bioalteration of sulfide minerals: results from in situ incubation studies

We present results of incubation studies conducted at low temperatures (∼4°C) in the vicinity of a seafloor hydrothermal vent system. We reacted Fe-, S-, Cu-, and Zn-bearing minerals including pyrite, marcasite, chalcopyrite, sphalerite, elemental sulfur, and a portion of a natural chimney sulfide structure for 2 months at the Main Endeavour Segment of the Juan de Fuca Ridge in the Pacific Ocean. Our study utilizes Fluorescent In Situ Hybridizations (FISH), Scanning and Transmission Electron Microscopy (SEM, TEM), and light microscopic analysis. The surfaces of these minerals are solely colonized by Bacteria and not by Archaea. Colonization densities vary over an order of magnitude with the following sequence: elemental sulfur > chimney sulfide > marcasite > pyrite > sphalerite > chalcopyrite, and correspond well with the abiotic oxidation kinetics of these materials, excepting elemental sulfur, which is both the least reactive to oxidizing species and the most heavily colonized. Colonization densities also correspond with apparent degree of reaction (dissolution pitting + accumulation of secondary alteration products). Heavy accumulations of secondary Fe oxides on Fe-bearing minerals, most notably on the chimney sulfide, form in situ as the result of mineral dissolution and the activity of neutrophilic Fe-oxidizing bacteria. Results suggest that mineral-oxidizing bacteria play a prominent role in weathering of seafloor sulfide deposits, and that microbial utilization of mineral substrates contributes to biomass production in seafloor hydrothermal environments.     

Diatom-inference models for surface-water temperature and salinity developed from a 57-lake calibration set from the Sierra Nevada, California, USA

Physical, chemical, and biological data were collected from a suite of 57 lakes that span an elevational gradient of 1360 m (2115 to 3475 m a.s.l.) in the eastern Sierra Nevada, California, USA as part of a multiproxy study aimed at developing transfer functions from which to infer past drought events. Multivariate statistical techniques, including canonical correspondence analysis (CCA), were used to determine the main environmental variables influencing diatom distributions in the study lakes. Lakewater depth, surface-water temperature, salinity, total Kjeldahl nitrogen, and total phosphorus were important variables in explaining variance in the diatom distributions. Weighted-averaging (WA) and weighted-averaging partial least squares (WA-PLS) were used to develop diatom-based surface-water temperature and salinity inference models. The two best diatom-inference models for surface-water temperature were developed using simple WA and inverse deshrinking. One model covered a larger surface-water temperature gradient (13.7 °C) and performed slightly poorer (r² = 0.72, RMSE = 1.4 °C, RMSEP_jack = 2.1 °C) than a second model, which covered a smaller gradient (9.5 °C) and performed slightly better (r² = 0.89, RMSE = 0.7 °C, RMSEP_jack = 1.5 °C). The best diatom-inference model for salinity was developed using WA-PLS with three components (r² = 0.96, RMSE = 4.06 mg L^–1, RMSEP_jack = 11.13 mg L^–1). These are presently the only diatom-based inference models for surface-water temperature and salinity developed for the southwestern United States. Application of these models to fossil-diatom assemblages preserved in Sierra Nevada lake sediments offers great potential for reconstructing a high-resolution time-series of Holocene and late Pleistocene climate and drought for California.     

Free vibration of frame shear wall structures on flexible foundations

The finite strip method is used to study the effect of an elastic foundation on the natural frequencies of coupled frame shear wall structures. The solid wall in the structure is divided into several strip elements, the column is treated as a line element and the effect of the connecting beams is dealt with through the compatibility matrices which transfer their structural properties to the adjacent strip or line elements. The comparison functions which satisfy the boundary conditions of being free at the top and being spring supported at the bottom are used for the displacement field in the longitudinal direction. A series of numerical examples is presented to show the accuracy and applicability of the proposed method.