Molecular expression of opsin gene in growing juvenile mackerel (<Emphasis Type="Italic">Scomber japonicus</Emphasis> Houttuyn)

Fish have developed color vision that is closely adapted to their photic environments, where both spectral sensitivity and the number of visual opsins are influenced. The mackerel used in this study is one of the most important fishery stocks in Korea. The opsin gene of the mackerel juveniles after 20 days in hatching was isolated and characterized based on the molecular study of visual photoreceptor. The full-length mackerel opsin gene was obtained by PCR amplification of genomic DNA, as well as cDNA synthesis. Sequence analysis of the opsin gene showed that it contained a 1,080 bp open reading frame encoding 360 amino acids. Based on Schiff’s base formation (S114, K119), glycosylation (E3, F37) and palmitoylation (S281, 282), the deduced amino acid sequence had a typical rod opsin. The mackerel and Gempylus serpens showed 73.7% DNA homology on opsin gene, which was higher than any other of investigated species. In the analysis of phylogenetic relationship, the genetic placement of the mackerel is closer to that of Scombroidei than Labroidei, with supporting somewhat strong bootstrap value. In the analysis of Northern and RT-PCR, the probed products were observed only in rapidly growing juveniles. These findings indicate that in mackerel opsin mRNA expression can be detected in day-20 hatching larvae. It may play an important role in stimulating growth hormone.     

Rare earth elements in bottom sediments of major rivers around the Yellow Sea: implications for sediment provenance

Rare earth elements (REEs) of 91 fine-grained bottom sediment samples from five major rivers in Korea (the Han, Keum, and Yeongsan) and China (the Changjiang and Huanghe) were studied to investigate their potential as source indicator for Yellow Sea shelf sediments, this being the first synthetic report on REE trends for bottom sediments of these rivers. The results show distinct differences in REE contents and their upper continental crust (UCC)-normalized patterns: compared to heavy rare earth elements (HREEs), light rare earth elements (LREEs) are highly enriched in Korean river sediments, in contrast to Chinese river sediments that have a characteristic positive Eu anomaly. This phenomenon is observed also in primary source rocks within the river catchments. This suggests that source rock composition is the primary control on the REE signatures of these river sediments, due largely to variations in the levels of chlorite and monazite, which are more abundant in Korean bottom river sediments. Systematic variations in ΣLREE/ΣHREE ratios, and in (La/Yb)–(Gd/Yb)_UCC but also (La/Lu)–(La/Y)_UCC and (La/Y)–(Gd/Lu)_UCC relations have the greatest discriminatory power. These findings are consistent with, but considerably expand on the limited datasets available to date for suspended sediments. Evidently, the REE fingerprints of these river sediments can serve as a useful diagnostic tool for tracing the provenance of sediments in the Yellow Sea, and for reconstructing their dispersal patterns and the circulation system of the modern shelf, as well as the paleoenvironmental record of this and adjoining marginal seas.     

Effect of wave amplitude on turbulent flow in a wavy channel by direct numerical simulation

The present study numerically investigates the characteristics of three-dimensional turbulent flow in a wavy channel. For the purpose of a careful observation of the effect of the wave amplitude on the turbulent flow, numerical simulations are performed at a various range of the wave amplitude to wavelength ratio (0.01?α/λ?0.05), where the wavelength is fixed with the same value of the mean channel height (H). The immersed boundary method is used to handle the wavy surface in a rectangular grid system, using the finite volume method. The Reynolds number (Re=U_bH/ν) based on the bulk velocity (U_b) is fixed at 6760. The present computational results for a wavy surface are well compared with those of references. When α/λ=0.02, the small recirculating flow occurs near the trough at the instant, but the mean reverse flow is not observed. In the mean flow field, the reverse flow appears from α/λ=0.03 among the wave amplitude considered in this study. The domain of the mean reverse flow defined by the locations of separation and reattachment depends strongly on the wave amplitude. The pressure drag coefficient augments with increasing the wave amplitude. The friction drag coefficient shows the increase and decrease behavior according to the wave amplitude. The quantitative information about the flow variables such as the distribution of pressure and shear stress on the wavy surface is highlighted.     

Accumulation features of arsenic species in various fishes collected from coastal cities in Korea

In this study, 36 fish species were collected from three coastal cities in Korea to investigate levels and patterns of six arsenicals (arsenite: As (III), arsenate: As (V), arsenocholine: AsC, arsenobetaine: AsB, monomethylarsonic acid: MMA, and dimethylarsinic acid: DMA). The levels of ∑₆ As in the different fish species varied substantially, ranging from 0.02 μg As/g ww (Islaeli carp) to 9.65 μg As/g ww (Skate ray) with a median of 0.40 μg As/g ww. All the arsenicals in marine fishes showed higher levels than those in freshwater fishes due to fish feed living in saline water. Overall, marine carnivorous fishes seem to be more contaminated with arsenic. For all the fish samples, AsB (mean fraction: 90.6%) was dominant among the six arsenicals, indicating biomethylation of inorganic arsenic and accumulation of AsB. Fish species with high water contents showed elevated levels of As (III), but there was no further significant correlations between arsenicals and water/lipid contents. Concentrations of As (V) were significantly lower than those of As (III), which implies that As (V) is reduced during biomethylation of inorganic arsenic. Consequently, we hypothesize that the toxicity of arsenic (mainly derived from As (III)) can be increased by the reduction of As (V), especially for the fish species with higher water contents.     

Classification of precipitation types using fall velocity-diameter relationships from 2D-video distrometer measurements

Fall velocity-diameter relationships for four different snowflake types (dendrite, plate, needle, and graupel) were investigated in northeastern South Korea, and a new algorithm for classifying hydrometeors is proposed for distrometric measurements based on the new relationships. Falling ice crystals (approximately 40 000 particles) were measured with a two-dimensional video disdrometer (2DVD) during a winter experiment from 15 January to 9 April 2010. The fall velocity-diameter relationships were derived for the four types of snowflakes based on manual classification by experts using snow photos and 2DVD measurements: the coefficients (exponents) for different snowflake types were 0.82 (0.24) for dendrite, 0.74 (0.35) for plate, 1.03 (0.71) for needle, and 1.30 (0.94) for graupel, respectively. These new relationships established in the present study (PS) were compared with those from two previous studies. Hydrometeor types were classified with the derived fall velocity-diameter relationships, and the classification algorithm was evaluated using 3× 3 contingency tables for one rain-snow transition event and three snowfall events. The algorithm showed good performance for the transition event: the critical success indices (CSIs) were 0.89, 0.61 and 0.71 for snow, wet-snow and rain, respectively. For snow events, the algorithm performance for dendrite and plate (CSIs = 1.0 and 1.0, respectively) was better than for needle and graupel (CSIs = 0.67 and 0.50, respectively).     

Retrieval of outgoing longwave radiation from COMS narrowband infrared imagery

Hourly outgoing longwave radiation(OLR) from the geostationary satellite Communication Oceanography Meteorological Satellite(COMS) has been retrieved since June 2010. The COMS OLR retrieval algorithms are based on regression analyses of radiative transfer simulations for spectral functions of COMS infrared channels. This study documents the accuracies of OLRs for future climate applications by making an intercomparison of four OLRs from one single-channel algorithm(OLR12.0using the 12.0 μm channel) and three multiple-channel algorithms(OLR10.8+12.0using the 10.8 and 12.0 μm channels; OLR6.7+10.8using the 6.7 and 10.8 μm channels; and OLR All using the 6.7, 10.8, and 12.0 μm channels). The COMS OLRs from these algorithms were validated with direct measurements of OLR from a broadband radiometer of the Clouds and Earth's Radiant Energy System(CERES) over the full COMS field of view [roughly(50°S–50°N, 70°–170°E)] during April 2011.Validation results show that the root-mean-square errors of COMS OLRs are 5–7 W m-2, which indicates good agreement with CERES OLR over the vast domain. OLR6.7+10.8and OLR All have much smaller errors(～ 6 W m-2) than OLR12.0and OLR10.8+12.0(～ 8 W m-2). Moreover, the small errors of OLR6.7+10.8and OLR All are systematic and can be readily reduced through additional mean bias correction and/or radiance calibration. These results indicate a noteworthy role of the6.7 μm water vapor absorption channel in improving the accuracy of the OLRs. The dependence of the accuracy of COMS OLRs on various surface, atmospheric, and observational conditions is also discussed.     

Effect of snow cover on pan-Arctic permafrost thermal regimes

This study quantitatively evaluated how insulation by snow depth (SND) affected the soil thermal regime and permafrost degradation in the pan-Arctic area, and more generally defined the characteristics of soil temperature (T_SOIL) and SND from 1901 to 2009. This was achieved through experiments performed with the land surface model CHANGE to assess sensitivity to winter precipitation as well as air temperature. Simulated T_SOIL, active layer thickness (ALT), SND, and snow density were generally comparable with in situ or satellite observations at large scales and over long periods. Northernmost regions had snow that remained relatively stable and in a thicker state during the past four decades, generating greater increases in T_SOIL. Changes in snow cover have led to changes in the thermal state of the underlying soil, which is strongly dependent on both the magnitude and the timing of changes in snowfall. Simulations of the period 2001–2009 revealed significant differences in the extent of near-surface permafrost, reflecting differences in the model’s treatment of meteorology and the soil bottom boundary. Permafrost loss was greater when SND increased in autumn rather than in winter, due to insulation of the soil resulting from early cooling. Simulations revealed that T_SOIL tended to increase over most of the pan-Arctic from 1901 to 2009, and that this increase was significant in northern regions, especially in northeastern Siberia where SND is responsible for 50 % or more of the changes in T_SOIL at a depth of 3.6 m. In the same region, ALT also increased at a rate of approximately 2.3 cm per decade. The most sensitive response of ALT to changes in SND appeared in the southern boundary regions of permafrost, in contrast to permafrost temperatures within the 60°N–80°N region, which were more sensitive to changes in snow cover. Finally, our model suggests that snow cover contributes to the warming of permafrost in northern regions and could play a more important role under conditions of future Arctic warming.     

Radio Emission from Masuda Sources

We note that different models, providing comparably good interpretation of the hard X-ray properties of so-called Masuda sources, can make distinctly different predictions for the radio emission produced at the Masuda source by the same population of accelerated electrons. Accordingly, we calculate the radio emission within a few competing models, i.e., those involving magnetic, turbulent, and collisional trapping of the fast electrons in the coronal source. We show that even available incomplete radio observations of the classical Masuda event and a Masuda-like event on 31 December 2007, recently reported by Krucker et al. (Astrophys. J. 714, 1108, 2010) are highly valuable in restricting the physical model of the source. Furthermore, our study proposes that combination of more complete high-resolution X-ray and radio observations can allow unambiguous distinction between the competing Masuda source models.     

Aerobic oxidation of mackinawite (FeS) and its environmental implication for arsenic mobilization

Oxidation of mackinawite (FeS) and concurrent mobilization of arsenic were investigated as a function of pH under oxidizing conditions. At acidic pH, FeS oxidation is mainly initiated by the proton-promoted dissolution, which results in the release of Fe(II) and sulfide in the solution. While most of dissolved sulfide is volatilized before being oxidized, dissolved Fe(II) is oxidized into green rust-like precipitates and goethite (α-FeOOH). At basic pH, the development of Fe(III) (oxyhydr)oxide coating on the FeS surface inhibits the solution-phase oxidation following FeS dissolution. Instead, FeS is mostly oxidized into lepidocrocite (γ-FeOOH) via the surface-mediated oxidation without dissolution. At neutral pH, FeS is oxidized via both the solution-phase oxidation following FeS dissolution and the surface-mediated oxidation mechanisms. The mobilization of arsenic during FeS oxidation is strongly affected by FeS oxidation mechanisms. At acidic pH (and to some extent at neutral pH), the rapid FeS dissolution and the slow precipitation of Fe (oxyhydr)oxides results in arsenic accumulation in water. In contrast, the surface-mediated oxidation of FeS at basic pH leads to the direct formation of Fe (oxyhydr)oxides, which provides effective adsorbents for As under oxic conditions. At acidic and neutral pH, the solution-phase oxidation of dissolved Fe(II) accelerates the oxidation of the less adsorbing As(III) to the more adsorbing As(V). This study reveals that the oxidative mobilization of As may be a significant pathway for arsenic enrichment of porewaters in sulfidic sediments.