Decadal-scale variation in COD and DIN dynamics during the summer in the inner area of the Ariake Sea,Japan

More than 30 years of chemical oxygen demand (COD) and dissolved inorganic nitrogen (DIN) data for the inner area of the Ariake Sea were analyzed with a box model to show the changes in the average seasonal budget and the decadal-scale variation during the summer. The COD peaked in August and March on average. This summertime peak can be explained by an enhanced riverine load and increased primary production. The peak in March suggested additional organic matter production. There were also two peaks in DIN concentration on average: a summertime peak that could be explained by an enhanced riverine load, and a peak in December that was more complicated to explain. From the 1970s to the early 1990s, the bottom water in this area became increasingly hypoxic due to increased COD during the summer, even though there were minimal increases in terrestrial COD and nutrient loads and there were tidal flats covering a widespread area during this period. The increase in COD was caused by increased net ecosystem production, which was due to enhanced primary production induced by an increased freshwater residence time and decreased bivalve grazing. There was a negative feedback control in which hypoxia progressively increased, leading to declines in bivalve biomass, which in turn decreased the grazing pressure limiting primary production, meaning that primary production increased and the area became even more hypoxic. The net DIN production decreased during the 1980s and the 1990s. This was consistent with the change in net ecosystem production according to the COD.     

Habitability analyses of aquatic bacteria

Habitability is defined as an ability of an organism to inhabit different environments. Habitability of organisms, however, cannot be inferred from analyses such as a whole genome or community structures. A recently developed database, the MetaMetaDB, gives us information from what kind of environments one particular 16S rRNA sequence data has ever been obtained, and thus enables us to infer the habitability of the bacterium in question. In order to check the applicability of this database to study the habitability of aquatic bacteria, samples collected at two Naka River stations, one estuarine station from Naka River Estuary, two coastal stations at Oarai in Ibaraki Prefecture, Japan and one station in the Kuroshio Current of the western North Pacific were examined. The phylotypes were tracked against the MetaMetaDB and it was reasonably found that the low-salinity stations were dominated by sequences with “freshwater and groundwater”, “human” and “wastewater” habitat identities, while the high-salinity stations were dominated by those with a “marine” identity. The phylotypes of low-salinity stations with a particular habitat identity were absent or rare in the high-salinity stations and vice versa. The MetaMetaDB also showed that sequences of Cyanobacteria or related phylogenetic groups may be present in the human gut, as well as the probable distribution of the relatives (ancestors/descendants/siblings) of some bacteria. These overall findings proved that the MetaMetaDB is useful as a new tool to infer microbial habitability and it gives us new information on the possible origin and ecology of microorganisms in the environments.     

High-frequency ocean radar derived characteristics of sea surface currents in the Ariake Sea,Japan

Composite analysis was conducted using high-frequency radar data obtained during 2006–2015 in order to gain a better understanding of the current field in the Ariake Sea. The seasonally averaged surface current in the Ariake Sea was directed southward in all seasons, except around river mouths during summer. Heavy rainfall enhanced the outflow along the eastern coast of the Shimabara Peninsula from Isahaya Bay to the southern area 2–5 days after heavy rainfall. Spring–neap differences were clearly seen in the southward current along the Shimabara Peninsula. Interannual variation in the M₂ tidal current amplitude was synchronized with the lunar nodal cycle.     

Seafloor multibeam backscatter calibration experiment: comparing 45°-tilted 38-kHz split-beam echosounder and 30-kHz multibeam data

Obtaining absolute seafloor backscatter measurements from hydrographic multibeam echosounders is yet to be achieved. We propose a low-cost experiment to calibrate the various acquisition modes of a 30-kHz Kongsberg EM 302 multibeam echosounder in a range of water depths. We use a 38-kHz Simrad EK60 calibrated fisheries split-beam echosounder mounted at 45° angle on the vessel’s hull as a reference for the calibration. The processing to extract seafloor backscatter from the EK60 requires bottom detection, ray tracing and motion compensation to obtain acceptable geo-referenced backscatter measurements from this non-hydrographic system. Our experiment was run in Cook Strait, New Zealand, on well-known seafloor patches in shallow, mid, and deep-water depths. Despite acquisition issues due to weather, our results demonstrate the strong potential of such an approach to obtain system’s absolute calibration which is required for quantitative use of backscatter strength data.     

Equatorial Pacific gravity lineaments: interpretations with basement topography along seismic reflection lines

The central equatorial Pacific is interesting for studying clues to upper mantle processes, as the region lacks complicating effects of continental remnants or major volcanic plateaus. In particular, the most recently produced maps of the free-air gravity field from satellite altimetry show in greater detail the previously reported lineaments west of the East Pacific Rise (EPR) that are aligned with plate motion over the mantle and originally suggested to have formed from mantle convection rolls. In contrast, the gravity field 600 km or farther west of the EPR reveals lineaments with varied orientations. Some are also parallel with plate motion over the mantle but others are sub-parallel with fracture zones or have other orientations. This region is covered by pelagic sediments reaching ~?500–600 m thickness so bathymetry is not so useful for seeking evidence for plate deformation across the lineaments. We instead use depth to basement from three seismic reflection cruises. In some segments of these seismic data crossing the lineaments, we find that the co-variation between gravity and basement depth is roughly compatible with typical densities of basement rocks (basalt, gabbro or mantle), as expected for some explanations for the lineaments (e.g., mantle convection rolls, viscous asthenospheric inter-fingering or extensional deformation). However, some other lineaments are associated with major changes in basement depth with only subtle changes in the gravity field, suggesting topography that is locally supported by varied crustal thickness. Overall, the multiple gravity lineament orientations suggest that they have multiple origins. In particular, we propose that a further asthenospheric inter-fingering instability mechanism could occur from pressure variations in the asthenosphere arising from regional topography and such a mechanism may explain some obliquely oriented gravity lineaments that have no other obvious origin.     

Oxygen and Sulfides in Bottom Sediments of the Coastal Sevastopol Region of Crimea

Spatial variations in the distribution and fluxes of dissolved oxygen and sulfide in bottom sediments of Omega and Sevastopol bays have been studied. The results of analysis reveal that the distribution of dissolved oxygen and sulfide in pore water depends mostly on seasonal variations in the oxygen concentration in bottom water, grain size, the organic carbon content in bottom sediments, and, additionally for Sevastopol Bay, the iron content. The oxygen flux at the bottom of Sevastopol Bay is 20 times larger in winter–spring compared to that of Omega Bay. Anaerobic conditions in Sevastopol Bay sediments are observed much closer to the surface, with their subsequent development in bottom water.     

Wave Interactions with Multiple Semi-Immersed Jarlan-Type Perforated Breakwaters

This study examines wave interactions with multiple semi-immersed Jarlan-type perforated breakwaters. A numerical model based on linear wave theory and an eigenfunction expansion method has been developed to study the hydrodynamic characteristics of breakwaters. The numerical results show a good agreement with previous analytical results and experimental data for limiting cases of double partially immersed impermeable walls and double and triple Jarlan-type breakwaters. The wave transmission coefficient C_T; reflection coefficient C_R, and energy dissipation coefficient C_E coefficients and the horizontal wave force exerted on the front and rear walls are examined. The results show that C_R reaches the maximum value when B/L = 0.46n while it is smallest when B/L=0.46n+0.24 (n=0, 1, 2,...). An economical triple semi-immersed Jarlan-type perforated breakwater can be designed with B/L = 0.25 and C_R and C_T ranging from 0.25 to 0.32 by choosing a relative draft d/h of 0.35 and a permeability parameter of the perforated front walls being 0.5 for an incident wave number kh nearly equal to 2.0. The triple semi-immersed Jarlan-type perforated breakwaters with significantly reduced C_R, will enhance the structure’s wave absorption ability, and lead to smaller wave forces compared with the double one. The proposed model may be used to predict the response of a structure in the preliminary design stage for practical engineering.     

In situ sampling reveals rapid uptake and depuration of polycyclic aromatic hydrocarbons by surf clams (Paphies subtriangulata) affected by the Rena oil spill

ABSTRACT

To investigate the uptake and depuration of polycyclic aromatic hydrocarbons associated with the Rena oil spill we sampled the surf clam Paphies subtriangulata at two open coast locations (6?km apart) just prior to oil coming ashore (7 October 2011), then at 1–3 week intervals for the next 4 months. Total polycyclic aromatic hydrocarbons (tPAH) increased at both sites from 1 to 96–124?µg?kg^?1 (wet weight) by 18 October before declining to low levels (<4?µg?kg^?1) by February 2012. Ongoing sampling throughout 2012–2014 included three additional sites to the north east (up to 30?km away) and a site 5?km to the south east revealing tPAH levels generally <10?µg?kg^?1 except in October 2013 where levels ranged between 39–45?µg?kg^?1 at all sites. A comparison of PAH component profiles with oil-contaminated beach sediment indicated that the high levels observed in surf clams between October–December 2011 were clearly associated with the Rena spill. However, the October 2013 peak had a PAH profile inconsistent with weathered Rena oil, suggesting an alternative source of contamination. Our results highlight the potential for P. subtriangulata as a PAH monitoring tool but recognise more study is needed to better quantify baseline levels and uptake and depuration dynamics.     

Holocene Faunal Trends in West Siberia and Their Causes

Based on an analysis of the transformation of vertebrate and invertebrate fauna of West Siberia in the Holocene, the classification and periodization of the main faunal trends are presented. Against the background of changing environmental conditions, the key regularities of the faunal dynamics, and the ways some species penetrate into the territory of the region and others disappear from the beginning of the Holocene to the present time have been indicated. Three global and four fluctuating trends are identified. The anthropogenic trend is ascertained separately. A conclusion is made about the prevailing causes of these changes, associated primarily with periodic climatic processes of different levels, determined by planetary geological and cosmic cycles. It is emphasized that, in the historical period, anthropogenic factors play a significant role in the regional faunal dynamics.     

Hydrochemical structure of the waters in the eastern part of the Laptev Sea in autumn 2015

The study of the Laptev Sea was a part of a comprehensive program for investigating Arctic seas during the cruise 63 of the R/V Akademik Mstislav Keldysh. On a transect along 130° E (September 8–14, 2015) from the estuary area of the Lena River on the traverse of the city of Tiksi to the continental slope (over 700 km), water samples were taken to study the hydrochemical structure of waters and the influence of the Lena River flow. From the obtained data, it was found that the effect of fresh water on the sea surface layer was very high and can be traced to a great distance from the river delta. An unconservative distribution of some hydrochemical parameters in the mixing zone was recorded. The concentration of nutrients in the surface layer, and a high turbidity can serve as limiting factors in the development of the phytoplankton community.