Data Assimilation Modeling of the Barotropic Tides in the Korea/Tsushima Strait

During 1999–2000, 13 bottom mounted acoustic Doppler current profilers (ADCPs) and 12 wave/tide gauges were deployed along two lines across the Korea/Tsushima Strait, providing long-term measurements of currents and bottom pressure. Tidally analyzed velocity and pressure data from the moorings are used in conjunction with other moored ADCPs, coastal tide gauge measurements, and altimeter measurements in a linear barotropic data assimilation model. The model fits the vertically averaged data to the linear shallow water equations in a least-squares sense by only adjusting the incoming gravity waves along the boundaries. Model predictions are made for the O₁, P₁, K₁, μ₂, N₂, M₂, S₂, and K₂ tides. An extensive analysis of the accuracy of the M₂ surface-height predictions suggests that for broad regions near the mooring lines and in the Jeju Strait the amplitude prediction errors are less than 0.5 cm. Elsewhere, the analysis suggests that errors range from 1 to 4 cm with the exception of small regions where the tides are not well determined by the dataset. The errors in the model predictions are primarily caused by bias error in the model’s physics, numerics, and/or parameterization as opposed to random errors in the observational data. In the model predictions, the highest ranges in sea level height occur for tidal constituents M₂, S₂, K₁, O₁, and N₂, with the highest magnitudes of tidal velocities occurring for M₂, K₁, S₂, and O₁. The tides exhibit a complex structure in which diurnal constituents have higher currents relative to their sea level height ranges than semi-diurnal constituents.     

Biomarker responses in Macoma nasuta (Bivalvia) exposed to sediments from northern San Francisco Bay

Our study investigates biomarker responses and survival of Macoma nasuta exposed to sediments collected from six locations in northern San Francisco Bay. Biomarkers analyzed were stress proteins (hsp70) in gill, mantle and digestive gland, lysosomal membrane damage and histopathologic lesions. Sediments and clam tissues were analyzed for a comprehensive suite of heavy metals and trace organic pollutants. Sediment grain size and organic carbon content were determined. Clams accumulated metals, polyaromatic hydrocarbons (PAHs) and organochlorine pesticides (aldrin and p,p^′-DDT and its metabolites p,p^′-DDD and p,p^′-DDE). Pearson and Spearman correlation analysis revealed that mortality, hsp70 in gill and histopathologic lesion scores in gonads, and lysosomal membrane damage were significantly correlated with tissue concentrations of DDT and/or its metabolites. Tissue concentrations of metals, in particular nickel, chromium, and copper, were associated with macrophage aggregates in digestive gland and germ cell necrosis. Cadmium was linked to mortality and lysosomal membrane damage.     

Variations in the abundance of fisheries resources and ecosystem structure in the Japan/East Sea

Evidence supports the hypothesis that two climatic regime shifts in the North Pacific and the Japan/East Sea, have affected the dynamics of the marine ecosystem and fisheries resources from 1960 to 2000. Changes in both mixed layer depth (MLD) and primary production were detected in the Japan/East Sea after 1976. The 1976 regime shift appears to have caused the biomass replacement with changes in catch production of major exploited fisheries resources, including Pacific saury, Pacific sardine and filefish. Both fisheries yield and fish distribution are reflected in these decadal fluctuations. In the 1960s and 1990s, common squid dominated the catches whereas in the 1970s and 1980s, it was replaced by walleye pollock. In the post-1988 regime shift, the distribution of horse mackerel shifted westward and southward and its distributional overlap with common mackerel decreased. The habitat of Pacific sardine also shifted away from mackerel habitats during this period. To evaluate changes in the organization and structure of the ecosystem in the Japan/East Sea, a mass-balanced model, Ecopath, was employed. Based on two mass-balanced models, representing before (1970–75) and after (1978–84) the 1976 regime shift, the weighted mean trophic level of catch increased from 3.09 before to 3.28 after. Total biomass of species groups in the Japan/East Sea ecosystem increased by 15% and total catch production increased by 48% due to the 1976 regime shift. The largest changes occurred at mid-trophic levels, occupied by fishes and cephalopods. The dominant predatory species shifted from cephalopods to walleye pollock due to the 1976 regime shift. It is concluded that the climatic regime shifts caused changes in the structure of the ecosystem and the roles of major species, as well as, large variations in biomass and production of fisheries resources.     

What can flatfish ontogenies tell us about pelagic and benthic lifestyles?

Eye migration, asymmetrical pigmentation, and a 90° rotation in posture are developmental changes that unify all flatfishes and facilitate a transition from a pelagic to a benthic existence. Settlement places the fish in new environmental conditions which may require different types and levels of performance for survival compared to those needed in the water column. Since structure and performance vary as a consequence of ontogeny, it is likely that natural selection has acted on the ontogeny of flatfishes differently from fishes that do not settle (pelagic fishes) to provide different survival skills by the time flatfishes settle. This paper provides examples of quantitative methods for comparing fish ontogenies in the context of three predictions: (1) different flatfish species undergo settlement at a common ontogenetic state; (2) they have a common set of skills at settlement that differ from those of pelagic species of the same ontogenetic state; and (3) skills or features that appear earlier in the ontogenetic program of flatfishes than in pelagic fishes suggest attributes that are important to survival in a benthic habitat. Preliminary comparisons suggest that flatfishes may have accelerated development of their mechanosensory system relative to pelagic species. Firm conclusions about ecologically important differences between the pelagic and benthic habitats derived from analyses of ontogenetic events will require more kinds of data from a broader selection of species.     

Processing and attenuation of noise in deep seismic-reflection data from the Gulf of Maine

The U.S. Geological Survey deep crustal studies reflection profile across the Gulf of Maine off southeastern New England was affected by three sources of noise: side-scattered noise, multiples, and 20-Hz whale sounds. The special processing most effective in minimizing this noise consisted of a combination of frequency-wavenumber (F-K) filtering, predictive deconvolution, and spectral whitening, each applied in the shot domain (prestack). Application of the F-K filter to remove side-scatter noise in the poststack domain resulted in a much poorer quality profile. The prestack noise suppression processing techniques resulted in a reflection profile with good signal-to-noise ratios and reliable strong reflections, especially at depths equivalent to the lower crust (24–34 km). Certain geologic features, such as a buried rift basin and a crustal fault are resolved much better within the upper crust after this processing. Finite difference migration of these data using realistic velocities produced excellent results. Migration was essential to distinguish between abundant dipping and subhorizontal reflections in the lower crust as well as to show an essentially transparent upper mantle.     

Observations of upwelling around the Izu Peninsula,Japan: May 1982

Hydrographic observations between the Izu Peninsula and Oshima Island, Japan, in May 1982, showed upwelling around the tip of the Peninsula and possibly also in the lee of Oshima Island. The upwelling introduced water as cold as 18 C with nitrate concentrations of 3M to the surface. Temperature/salinity analyses indicated that the upwelled water was of Kuroshio characteristics. Slightly fresher water was advected out of Sagami Bay in a coastal counter current.Contribution number 470 from the Shimoda Marine Research Center, University of Tsukuba.     

Wave characteristics past a flexible fishnet

The scattering of surface waves by a flexible fishnet is studied analytically. The fishnet is modelled as a porous flexible barrier displaced solely by hydrodynamic force like a catenary. The objective is to investigate how a flexible permeable barrier affects the passing waves in the way they are transmitted and reflected, as observed by the fact that the water inside a fishfarm surrounded by fishnets is significantly calmer than that outside. The boundary value problems are solved by defining the reflection coefficient in terms of velocity potential and then the full solutions are obtained by suitable application of the eigenfunction expansion method and the least squares approximation method. The variations of the reflection coefficient, hydrodynamic pressure, barrier deformation and surface wave elevation are determined with respect to the barrier length, porosity and stiffness. It is observed that as the fishnet gets more flexible, its deformation increases and the reflection coefficient decreases, whereas as the fishnet gets more porous, more water can pass through it and thus the reflection coefficient, barrier deformation and the hydrodynamic force are reduced. The flexibility of the barrier behaves like its porosity by allowing more wave energy to act on it through its deformation and hence reduce the reflection and hydrodynamic force of the incident waves acting on the barrier.     

Real-time video mosaicking of the ocean floor

An approach was developed for real-time creation of video mosaics of the ocean floor. The approach uses visual correspondence during both image acquisition and consolidation to insure that there are no gaps in the mosaic. The use of visual information for mosaic creation offers an accuracy previously unachievable in real time. A complete mosaicking approach was developed, including a technique for image registration and several strategies for image acquisition control. The approach was implemented and tested experimentally. Ocean-floor mosaics were created in real time using a remotely-operated vehicle. In addition, extensive mosaicking experiments were conducted in a test-tank environment using a semiautonomous underwater robot