Molecular phylogeny of the families Pleuronectidae and Poecilopsettidae (PISCES,Pleuronectiformes) from Korea,with a Proposal for a new classification

A new classification of the Korean pleuronectids was proposed based on a molecular phylogeny using specimens collected from Korea (including some Japanese specimens) between 2008 and 2013. A molecular phylogeny based on partial sequences of the two mitochondrial DNA regions (COI and 16S rRNA) supported the reciprocal monophyly of the three genera, Cleisthenes, Pleuronectes and Pseudopleuronectes. We also found that the genus Poecilopsetta is clearly distinct from Pleuronectidae at the family level. Therefore, the previous classification of the Korean pleuronectids should be changed as follows; two families (Pleuronectidae and Poecilopsettidae), 18 genera, and 26 species. Further research is required to resolve the taxonomic uncertainty of the five species in the genus Limanda, which clustered into two clades in our analysis.     

Genetic stock identification of immature chum salmon (<Emphasis Type="Italic">Oncorhynchus keta</Emphasis>) in the western Bering Sea, 2004

Genetic stock identification studies have been widely applied to Pacific salmon species to estimate stock composition of complex mixed-stock fisheries. In a September-October 2004 survey, 739 chum salmon (Oncorhynchus keta) specimens were collected from 23 stations in the western Bering Sea. We determined the genetic stock composition of immature chum salmon based on the previous mitochondria DNA baseline. Each regional estimate was computed based on the conditional maximum likelihood method using 1,000 bootstrap resampling and then pooled to the major regional groups: Korea - Japan - Primorie (KJP) / Russia (RU) / Northwest Alaska (NWA) / Alaska Peninsula - Southcentral Alaska - Southeast Alaska - British Columbia - Washington (ONA). The stock composition of immature chum salmon in the western Bering Sea was a mix of 0.424 KJP, 0.421 RU, 0.116 NWA, and 0.039 ONA stocks. During the study period, the contribution of Asian chum salmon stocks gradually changed from RU to KJP stock. In addition, North American populations from NWA and ONA were small but present near the vicinity of the Russian coast and the Commander Islands, suggesting that the study areas in the western Bering Sea were an important migration route for Pacific chum salmon originating both from Asia and North America during the months of September and October. These results make it possible to better understand the chum salmon stock composition of the mixed-stock fisheries in the western Bering Sea and the stock-specific distribution pattern of chum salmon on the high-seas.     

Responses of meiofauna and nematode communities to crude oil contamination in a laboratory microcosm experiment

We examined the effects of crude oil contamination on community assemblages of meiofauna and nematodes after exposure to total petroleum hydrocarbons in the laboratory. We administered a seawater solution that had been contaminated with total petroleum hydrocarbons to seven treatment groups at different concentrations, while the control group received uncontaminated filtered seawater. The average density of total meiofauna in the experimental microcosms diluted with 0.5%, 1%, 2%, and 4% contaminated seawater was higher than the density in the control. The average density of total meiofauna in the 8%, 15%, and 20% microcosms was lower than the density in the control. The density of nematodes was similar to that of the total meiofauna. Cluster analysis divided the microcosms into group 1 (control, 0.5%, 1%, 2%, and 4% microcosms) and group 2 (8%, 15%, and 20% microcosms). However, SIMPROF analysis showed no significant difference between the two groups (p > 0.05). Bolbolaimus spp. (37.1%) were dominant among the nematodes. Cluster analysis showed similar results for nematode and meiofaunal communities. The total meiofaunal density, nematode density, and number of Bolbolaimus spp. individuals were significantly negatively associated with the concentration of total petroleum hydrocarbons (Spearman correlation coefficients, p < 0.05). Within the nematodes, epistrate feeders (group 2A: 46%) were the most abundant trophic group. Among the treatment groups, the abundance of group 2A increased in low-concentration microcosms and decreased in high-concentration microcosms. Thus, our findings provide information on the effects of oil pollution on meiofauna in the intertidal zones of sandy beaches.     

Distribution of chaetognaths (Aphragmophora: Sagittidae) in Korean waters

The distribution of chaetognaths was investigated at 10 stations in the southern part of Korean waters (line S), at six stations in the eastern part of Korean waters (line E) and at 8 stations in the western part of Korean waters (line W). Ten species were present at the stations at line S and Flaccisagitta enflata and Zonosagitta bedoti were dominant among these species. Mean densities at line S ranged from 7 inds.m^-3 to 27 inds.m^-3. Five chaetognath species were found at the stations at line E and Zonosagitta nagae and Parasagitta elegans were the most abundant. Mean densities ranged from 1 to 10 inds.m-3. Four chaetognath species were present at line W and Aidanosagitta crassa and chaetognath juveniles were dominant in this line. Mean densities ranged from 21 to 199 inds.m^-3. The density of chaetognaths was highest at line W while the diversity of chaetognaths was highest at line S. Individuals of chaetognaths were divided into two groups, a group of line E and a mixed group of lines W and E. This study suggests that F. enflata is a warm water species; Z. nagae is a mixed water species; P. elegans is a cold water species; and A. crassa is a less saline water species. The mtCOI of F. enflata, which was a dominant species in the sampling area, was analyzed. F. enflata that are present in waters around Korean were genetically divided into two groups, which may be influenced by various oceanic factors.     

Numerical Studies on Piled Gravity Base Foundation for Offshore Wind Turbine

This study aims to investigate a hybrid gravity base foundation to support offshore wind tower. A new hybrid gravity base foundation considered in this study has five component piles, referred to as ‘piled gravity base foundation’. The three-dimensional finite element analyses were carried out for the piled gravity base foundation subjected to a combined load with a lateral load and overturning moment. The parametric analyses were undertaken varying the loading height and direction, the rigidity of the piled gravity base foundation, the field soil layers, and the clay strength. Overall, the response of the piled gravity base foundation was significantly influenced by the interaction between the cone base piles and the surrounding soil. The increased strength of the soil led to a significant reduction of the pile and gravity base foundation responses, in terms of the bending moments, axial forces, lateral displacements, and rotations.     

Field Evaluation of the Vertical Bearing Capacity of a Screw Pretensioned Spun High-Strength Concrete Pile

This study has evaluated the vertical bearing capacity by conducting static load tests for noise-free and vibration-free screw pretensioned spun high-strength concrete (PHC) piles installed using two different methods (end-squirting shoe and pre-boring methods). Vertical bearing capacity differences seem to occur due to the displacement of soils near the external circumference of a pile, depending on the installation method. A method by which to evaluate the bearing capacity of screw concrete piles is suggested by considering the equations that already have been used to calculate the bearing capacity of piles. Based on static load tests and analysis, the pile installed using the end-squirting shoe method was assumed to be a bored pile and it was reasonable to use the equation proposed by the Japanese Geotechnical Society. At the same time, the pile installed using the pre-boring method was deemed a low soil displacement pile and so it was reasonable to apply the equations proposed for calculating the bearing capacity of the driven pile suggested by the Architectural Institute of Japan.     

The Effect of Concrete Deformation on Displacement of an Axially Loaded Drilled Shaft

This article presents the settlement of drilled shafts resulting from their structural deformations. Although drilled shafts are widely used as foundations for settlement-sensitive structures such as bridges and high-rise buildings, the structural deformations of drilled shafts are not typically taken into account in the design process. However, if unexpected structural deformations of drilled shafts cause additional settlement to the foundation, the serviceability of the superstructure can be jeopardized. Unfortunately, very few research efforts have been made to quantify the structural deformation of drilled shafts; this needs to be addressed to accurately predict the settlement of drilled shafts. In this study, we investigate the effect of structural deformation on displacement of axially loaded drilled shafts. Finite element analyses were performed to quantify the structural deformation of drilled shafts. The analysis results indicated that the structural deformation of drilled shafts could be quite significant for long drilled shafts. The main factors that affected the structural deformation of drilled shafts were found to be pile length, the material properties of drilled shafts, and the relative humidity of surrounding soil. An approximate equation is proposed to estimate the long-term deformation of drilled shafts.     

Seasonal variation and principle of cyanobacterial biomass and forms in the water source area of Chaohu City,China

We investigated seasonal variations in cyanobacterial biomass and the forms of its dominant population(M. aeruginosa) and their correlation with environmental factors in the water source area of Chaohu City,China from December 2011 to October 2012. The results show that species belonging to the phylum Cyanophyta occupied the maximum proportion of phytoplankton biomass,and that the dominant population in the water source area of Chaohu City was M. aeruginosa. The variation in cyanobacterial biomass from March to August 2012 was well fitted to the logistic growth model. The growth rate of cyanobacteria was the highest in June,and the biomass of cyanobacteria reached a maximum in August. From February to March 2012,the main form of M.aeruginosa was the single-cell form; M.aeruginosa colonies began to appear from April,and blooms appeared on the water surface in May. The maximum diameter of the colonies was recorded in July,and then gradually decreased from August. The diameter range of M. aeruginosa colonies was 18.37–237.77 μm,and most of the colonies were distributed in the range 20–200 μm,comprising 95.5% of the total number of samples. Temperature and photosynthetically active radiation may be the most important factors that influenced the annual variation in M. aeruginosa biomass and forms. The suitable temperature for cyanobacterial growth was in the range of 15–30°C. In natural water bodies,photosynthetically active radiation had a significant positive influence on the colonial diameter of M.aeruginosa(P0.01).     

Identification and bioinformatics analysis of microRNAs from the sporophyte and gametophyte of <Emphasis Type="Italic">Pyropia haitanensis</Emphasis>

Pyropia haitanensis (T. J. Chang et B. F. Zheng) N. Kikuchi et M. Miyata (Porphyra haitanensis) is an economically important genus that is cultured widely in China. P. haitanensis is cultured on a larger scale than Pyropia yezoensis, making up an important part of the total production of cultivated Pyropia in China. However, the majority of molecular mechanisms underlying the physiological processes of P. haitanensis remain unknown. P. haitanensis could utilize inorganic carbon and the sporophytes of P. haitanensis might possess a PCK-type C₄-like carbon-fixation pathway. To identify microRNAs and their probable roles in sporophyte and gametophyte development, we constructed and sequenced small RNA libraries from sporophytes and gametophytes of P. haitanensis. Five microRNAs were identified that shared no sequence homology with known microRNAs. Our results indicated that P. haitanensis might posses a complex sRNA processing system in which the novel microRNAs act as important regulators of the development of different generations of P. haitanensis.