Significant population genetic structuring of the holoplanktic scyphozoan Pelagia noctiluca in the Atlantic Ocean

Pelagia noctiluca is thought to have a global distribution, yet our understanding of genetic connectivity across the range of this problem animal is poor. Here, we investigate the genetic structure of populations off southern Africa using mitochondrial COI and nuclear ITS1 and ITS2 genes, and compare the results to recent work conducted in the North-East Atlantic. Analyses showed significant differentiation between the southern and northern Atlantic population groups (COI Φ _st = 0.72, ITS2 Φ _st = 0.23, p < 0.001), which suggests historical rather than contemporary gene flow. Southern African samples showed high haplotypic (h = 1) and low nucleotide (π = 0.008) diversity, similar to those from Europe. Phylogenetic analyses suggest South African samples to have diverged earlier than those from the northern Atlantic.     

Phylogeography of the pelagic fish Seriola lalandi at different scales: confirmation of inter-ocean population structure and evaluation of southern African genetic diversity

The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic structure of this species at inter-and intra-ocean level and on a regional scale. DNA fragments of two mitochondrial genes, cytochrome b (Cytb) and cytochrome c oxidase subunit I (COI) and one nuclear gene, recombination activating gene 1 (RAG1), were sequenced to investigate the global-scale phylogeography of this species. The population genetic structure within the South Pacific, as well as along the South African coastline, was examined further using six microsatellite markers. Three distinct clades were identified for S. lalandi, which correspond with previously described subspecies of the North-East Pacific, North-West Pacific and the Southern Hemisphere. Within the latter, additional divergence was observed between the South Pacific and the South-East Atlantic regions. Divergence estimates were indicative of a Pacific origin for S. lalandi populations, because of Pleistocene vicariant events. Microsatellite analyses revealed overall significant genetic differentiation between South African and South Pacific samples. This corroborates recent findings on the global phylogeography of the species. No population differentiation was observed within South Africa, indicating high levels of gene flow.     

Rhinochimaera africana,a new longnose chimaera from southern Africa,with comments on the systematics and distribution of the genus Rhinochimaera Garman, 1901 (Chondrichthyes,Chimaeriformes, Rhinochimaeridae)

Rhinochimaera africana, a new species (Chondrichthyes, Chimaeriformes, Rhinochimaeridae), is described from five specimens from the Western Cape and KwaZulu coasts of southern Africa and from the Moçambique Channel between South-Western Madagascar and Europa Island. Two more specimens are known from off the Agulhas Bank, South Africa. It differs from the partially sympatric R. atlantica Holt and Byrne, 1909, and the Pacific R. pacifica (Mitsukuri, 1895) in its darker coloration, longer, broader, paddle-shaped snout, tooth plates of different shape, a more elongate-oval clasper glans, a shorter caudal fin with very short filament, and possibly a smaller dorsal fin and longer interdorsal space. R. africana males are mature at 568 mm body length (BDL), females adolescent at 476 mm BDL. A large, probably adult female of 650 mm BDL is larger than any recorded R. atlantica or R. africana. Wounds on two specimens indicate possible "cookie-cutter" bites by squaloid sharks, and one has a possible bite by another Rhinochimaera. Data on R. pacifica and R. atlantica, including 45 specimens from off Namibia and South Africa, are presented for comparison with R. africana. Caudal tubercle counts of R. africana (40–46) are intermediate between those of R. atlantica (most with 19–33, rarely up to 43) and of R. pacifica (41–68, rarely as low as 25–34). Southern African R. atlantica agree with North Atlantic R. atlantica in having few caudal tubercles, but there is slight overlap with R. pacifica in the case of higher counts recorded for R. africana. The systematics and distribution of the genus Rhinochimaera are reviewed, a terminology and abbreviation system for morphometries presented, and a key to species provided. The separation of R. atlantica and R. pacifica on caudal tubercle counts is provisionally accepted but considered problematical until adequate samples of both species can be critically compared. Proportional measurements and counts of caudal tubercles were highly variable in Rhinochimaera, with much allometry in proportions with growth and much individual variation. Selected morphometrics are plotted to show allometric trends in proportions that separate R. africana from other species.     

The invasive Asian green mussel Perna viridis in South Africa: all that is green is not viridis

The Asian green mussel Perna viridis is an invasive Indo-Pacific species recently reported from South African harbours. To verify the invasion, a phylogenetic (and morphological) analysis of green-shelled mussels (n = 39), found in six South African harbours, was conducted using the mitochondrial cytochrome c oxidase subunit I gene (COI). Estimates of genetic distances using the neighbour-joining analysis identified P. viridis only from Durban Harbour. All other green mussels were more than 3.2% divergent from P. viridis and were identified as green-shelled variants of indigenous P. perna. The only reliable morphological differences distinguishing the two species were the poorly developed mantle papillae and the wavy pallial line in P. viridis. The confirmed occurrence of P. viridis in a South African harbour suggests that there is a possible threat of the species becoming established and then spreading onto the open coast and competing with indigenous P. perna.     

Myosotella myosotis (Mollusca: Ellobiidae) — an overlooked,but well-established introduced species in South Africa

Myosotella myosotis is shown to be a well-established alien species in South Africa. Discovered in Port Elizabeth more than 100 years ago, it was initially thought to be indigenous and was described under two different names, but subsequent taxonomic work has demonstrated that these are synonyms of the variable and widely introduced European M. myosotis. This information, published in a revision of western Atlantic Ellobiidae, has escaped the attention of the South African marine science community. There has been no recent mention of M. myosotis or its two pseudoindigenous synonyms in the literature pertaining to either the estuaries or the malacofauna of South Africa, or to marine bioinvasions in the region. This example serves to demonstrate that invasion biology has a global context and that taxonomic literature is an important source of pertinent data. The fact that a species, which evidently occurs in abundance, can be overlooked for so long is both surprising and sobering.     

Oceanic distribution and life cycle of Calanus species in the Norwegian Sea and adjacent waters

The distribution and demography of Calanus finmarchicus, C. glacialis and C. hyperboreus were studied throughout their growth season on a basin scale in the Norwegian Sea using ordination techniques and generalized additive models. The distribution and demographic data were related to the seasonal development of the phytoplankton bloom and physical characteristics of water masses. The resulting quantified relationships were related to knowledge on life cycle and adaptations of Calanus species. C. finmarchicus was the numerically dominant Calanus species in Coastal, Atlantic and Arctic waters, showing strong association with both Atlantic and Arctic waters. C. hyperboreus and C. glacialis were associated with Arctic water; however, C. glacialis was occasionally observed in the Norwegian Sea and is probably an expatriate advected into the area from various origins. Demography indicated one generation per year of C. finmarchicus, a two-year life cycle of C. hyperboreus, and both one- and two-year life cycles for C. glacialis in the water masses where they were most abundant. For the examined Calanus species, young copepodites of the new generation seemed to be tuned to the phytoplankton bloom in their main water mass. The development of C. finmarchicus was delayed in Arctic water, and mis-match between feeding stages and the phytoplankton bloom may reduce survival and reproductive success of C. finmarchicus in Arctic water. Based on low abundances of C. hyperboreus CI–III in Atlantic water and main recruitment to CI prior to the phytoplankton bloom, we suggest that reproduction of C. hyperboreus in Atlantic water is not successful.     

Evidence of deep genetic divergence between populations of an important recreational fishery species,Lichia amia L. 1758, around southern Africa

Lichia amia is an important coastal recreational fishery species with a cosmopolitan distribution in the eastern Atlantic. In southern Africa, it is distributed from southern Angola to northern KwaZulu-Natal in South Africa. A recent biological survey revealed differences between Angolan and South African individuals suggesting that they may represent separate stocks. As fishery management decisions should be based on accurate knowledge of population structure, an initial survey of the genetic substructuring of L. amia was conducted on samples collected in southern Angola and South Africa. Assessment of genetic diversity and population structure was conducted using a fragment of the mitochondrial Control Region. Obtained genetic diversity levels were within the expected range for marine teleosts (h = 0.867, π = 0.007), and two deeply divergent (southern Angolan and South African) populations were identified (average φ _ST = 0.78) across the Benguela Current system. These results suggest that Angolan and South African L. amia should be managed as two independent stocks. This work represents the first assessment of population genetic substructuring across the Benguela Current of a valuable coastal fishery resource, and has application for future fisheries management.     

Evidence for multiple paternity and confirmation of an Indo-Pacific origin of blacktip shark Carcharhinus limbatus occurring in South Africa

The blacktip shark Carcharhinus limbatus is a cosmopolitan species found in warm-temperate, subtropical and tropical waters around the world. The research here aimed to assess whether multiple paternity exists in South African C. limbatus and to confirm phylogeographic patterns previously observed within the species. A minimum and maximum frequency of 50% and 71% multiple paternity, respectively, were observed in 14 litters genotyped with five microsatellite markers. Based on the mitochondrial control region, relatively high nucleotide and haplotype diversity characterised the South African sampling population, and pairwise φ_ST values indicated that it significantly differed from the populations of the Pacific and the western Atlantic oceans. The haplotype network showed that the South African samples were grouped closely with the Australian, Indo-Pacific and West African C. limbatus samples, which is suggestive of an Indo-Pacific origin for this population. This study is the first to report multiple paternity in this species. Furthermore, the results reveal that C. limbatus from South Africa is genetically diverse and phylogeographically distinct from most other C. limbatus populations.     

Distribution of Calanus finmarchicus in the northern North Atlantic and Arctic Ocean—Expatriation and potential colonization

The distribution of Calanus finmarchicus was studied on a transect across the central Greenland Sea, and on five transects from the Eurasian shelves across the Atlantic Inflow in the Arctic Ocean. Stage composition was used as an indicator for successful growth; gonad maturity and egg production were taken as indicators for reproductive activity. On the Arctic Ocean transects, these parameters were measured simultaneously from the sibling species Calanus glacialis. Response of egg production rate to different temperatures at optimal food conditions was very similar between both species in the laboratory. C. finmarchicus was present at all stations studied, but young developmental stages were only present close to the regions of submergence of Atlantic water under the Polar water. This together with a decreasing abundance and biomass from west to east along the Atlantic Inflow in the Arctic Ocean and reproductive failure indicates that C. finmarchicus is expatriated in the Arctic Ocean. We hypothesize that the late availability of food in the Arctic Ocean, rather than low temperature per se, limits reproductive success. Better reproductive success in the very low temperature regions of the Return Atlantic Current and the marginal ice zone in the Greenland Sea supports this hypothesis. The possibility for a replacement of C. glacialis by C. finmarchicus and consequences for the ecosystem after increasing warming of the Arctic are discussed.     

Comparative genetic structure in two high-dispersal prawn species from the south-west Indian Ocean

The penaeid prawns Fenneropenaeus indicus and Metapenaeus monoceros support shallow-water prawn fisheries in the south-west Indian Ocean. They are sympatric and have similar life histories, including developmental stages that depend on estuarine and marine habitats and a short dispersal duration. Nevertheless, M. monoceros juveniles display a more generalist habitat preference in estuaries and recruit to offshore habitats during a different season than F. indicus. We hypothesised that these differences would affect dispersal patterns, leading to dissimilar geographic genetic structure between the two taxa. Given their short dispersal phase, we also hypothesised that the Mozambique Channel would form a barrier to dispersal between the southeastern African mainland and Madagascar sites. Population differentiation was assessed based on analysis of mitochondrial DNA control-region sequences. Both species displayed high haplotype and low nucleotide diversity. Pairwise ?_ST statistics supported the existence of admixed populations along the African mainland sites for both species, with geographic distance isolating populations at the extremes of the sampled range (Kenya and east coast of South Africa). The Madagascar population differed significantly from African mainland populations. The concordant patterns in population differentiation suggest that F. indicus and M. monoceros can be considered as single African stocks, or fisheries management units.     

Diagnosis of a new species of neolithodes (Crustacea: Anomura: Lithodidae) from New Zealand (note)

A new stone crab, Neolithodes brodiei sp.nov., known from an ovigerous female taken in 455 fm (832 m) on the Campbell Plateau, is characterised and distinguished from the five species previously recognised. It is morphologically close to the North Atlantic N. agassizii and the South African N. asperrimus.     

Establishment and closure of the directed Florida whiting (Menticirrhus americanus) fishery and implications for North Atlantic right whale (Eubalaena glacialis) conservation and management

Today, ocean and coastal marine resource management is extremely complex. Marine resource managers are charged with conserving and managing many diverse species. Southern kingfish (Menticirrhus americanus), commonly known as whiting, are found from southern New England to Florida. During the fall through winter, western North Atlantic right whales (Eubalaena glacialis) are primarily found in the coastal nearshore waters off South Carolina, Georgia, and Florida, overlapping the whiting's range and habitat.     

First record of a Vestimentifera (Polychaeta: Siboglinidae) from chemosynthetic habitats in the western Mediterranean Sea—Biogeographical implications and future exploration

A new population of vestimentiferan tubeworms was discovered during a recent expedition to a mud volcano field in the Alboran Sea, western Mediterranean Sea. Morphological data and mitochondrial cytochrome-c-oxidase subunit 1 (COI) sequences show that the Alboran tubeworm is essentially identical to Lamellibrachia sp. found in the eastern Mediterranean. This is the first record of a vestimentiferan species in the western basin of the Mediterranean, an area with direct connection to the Atlantic via the Strait of Gibraltar and therefore of great importance to the study of distributional patterns and evolution of Mediterranean species. We examine the current hypotheses on the biogeographic distribution of vestimentiferan species in the eastern Atlantic and Mediterranean Sea and conclude that independently of when Lamellibrachia colonized the Mediterranean, neither the present hydrological settings of both Mediterranean Sea and Atlantic Ocean, nor vestimentiferans reproductive biology are impeditive to the presence of the Mediterranean species of Lamellibrachia in the NE Atlantic. The West African and Lusitanian margins are the most likely places to find living populations of this species in the NE Atlantic.     

A pilot study of genetic differentiation between two phenotypes of a Mediterranean population of the bivalve Cerastoderma glaucum and genetic discrimination with other Cerastoderma glaucum and Cerastoderma edule populations outside the Mediterranean

The internal transcribed spacer 1 (ITS1) region of 29 individuals of Cerastoderma glaucum (from the Mediterranean Sea, the Atlantic and the North Sea) and 18 individuals of Cerastoderma edule (from the Atlantic and the North Sea) and the cytochrome c oxidase subunit I (COI) region of 43 individuals of C. glaucum (from the Mediterranean Sea, the Atlantic and the North Sea) and 9 individuals of C. edule (from the Atlantic and the North Sea) were PCR amplified and sequenced. The ITS1 sequences led us to describe 27 genetic haplotypes, while 21 genetic haplotypes were determined via the COI sequences. The ITS1 and the COI sequences revealed an important genetic variability within the Mediterranean population of C. glaucum, which contained two different phenotypes: orange foot and yellow foot. A genetic differentiation between the two phenotypes was revealed by the nucleotide diversity index (π) and is strengthened by the AMOVA analysis. This result leads us to suspect the presence of two different groups in the same population of C. glaucum. Nevertheless to be confirmed this hypothesis requires further studies using more locations and a larger number of sample sizes.     

Phylogeographic patterns in Maguimithrax spinosissimus (Decapoda: Mithracidae) from Colombian Caribbean

The Caribbean king crab Maguimithrax spinosissimus is an important artisanal fisheries resource with a distribution range that includes the Florida Keys and Caribbean Sea islands. We carried out a phylogeographic analysis of M. spinosissimus in one oceanic (Old Providence) and two continental islands (Rosario and Tintipán). We analysed 89 and 49 Control Region (CR) and Cytochrome Oxidase I (COI) sequences, respectively. We found genetic differentiation between Old Providence and Rosario?+?Tintipán units (F_ST values of 0.84 for CR and 0.91 for COI gene), and gene flow between Rosario and Tintipán (F_ST values ?0.0085 for CR, P?>?.88; ?0.01 for COI gene, P?>?.99). Our analysis showed two genetic stocks and possibly an isolated biogeographic unit of M. spinosissimus. We suggest managing the species as different populations, and conducting more ecological and biological studies for the determination of possible cryptic species.     

Different effects of increased water temperature on egg production of Calanus finmarchicus and C. glacialis

Two copepod species, Calanus finmarchicus (a widespread North Atlantic species) and C. glacialis (an Arctic species), are dominant in the zooplankton of Arctic seas. We hypothesized that the anticipated warming in the Arctic might have different effects on the arctic and boreal species. The effect of temperature on egg production rate (EPR) in these species at temperatures of 0, 2.5, 5, 7.5, and 10°C under contrasting feeding conditions was assessed in 5-day-long experiments. The EPR of the fed C. finmarchicus increased with temperature over the entire tested range. On the contrary, the EPR of C. glacialis increased only in the range of 0–5°C and dropped with further temperature growth. The difference in the influence of temperature on reproduction of these two species is statistically significant. Feeding conditions have a considerable effect on the C. finmarchicus EPR. The EPRs of the female C. glacialis that fed or starved for 5 days displayed no significant difference. These results suggest that the C. finmarchicus EPR increases with temperature under favorable feeding conditions, whereas the C. glacialis EPR decreases at a temperature over 5°C independently of the feeding conditions. This allows for prediction of the shift in abundances of these two species in pelagic communities of Arctic seas in the case of a warming scenario.     

An overview of the ecosystems of the Barents and Norwegian Seas and their response to climate variability

The principal features of the marine ecosystems in the Barents and Norwegian Seas and some of their responses to climate variations are described. The physical oceanography is dominated by the influx of warm, high-salinity Atlantic Waters from the south and cold, low-salinity waters from the Arctic. Seasonal ice forms in the Barents Sea with maximum coverage typically in March–April. The total mean annual primary production rates are similar in the Barents and Norwegian Seas (80–90 g C m⁻²), although in the Barents, the production is higher in the Atlantic than in the ice covered Arctic Waters. The zooplankton is dominated by Calanus species, C. finmarchicus in the Atlantic Waters of the Norwegian and Barents Seas, and C. glacialis in the Arctic Waters of the Barents Sea. The fish species in the Norwegian Sea are mostly pelagics such as herring (Clupea harengus) and blue whiting (Micromesistius poutassou), while in the Barents Sea there are both pelagics (capelin (Mallotus villosus Müller), herring, and polar cod (Boreogadus saida Lepechin)) and demersals (cod (Gadus morhua L.) and haddock (Melanogrammus aeglefinus)). The latter two species spawn in the Norwegian Sea along the slope edge (haddock) or along the coast (cod) and drift into the Barents Sea. Marine mammals and seabirds, although comprising only a relatively small percentage of the biomass and production in the region, play an important role as consumers of zooplankton and small fish. While top-down control by predators certainly is significant within the two regions, there is also ample evidence of bottom-up control. Climate variability influences the distribution of several fish species, such as cod, herring and blue whiting, with northward shifts during extended warm periods and southward movements during cool periods. Climate-driven increases in primary and secondary production also lead to increased fish production through higher abundance and improved growth rates.     

A cryptic species of Mytilus (Mollusca: Bivalvia) on the west coast of South Africa

A biochemical genetic study of the mussels Perna perna and Choromytilus meridionalis on the west coast of South Africa revealed the presence of an unreported mytilid mussel that had previously been mistaken, because of its shell colour polymorphism, for either P. perna or a hybrid between P. perna and C. meridionalis. The gene products of 19 protein-coding loci in P. perna. C. meridionalis and in the newly recognized mussel were examined by means of horizontal starch-gel electrophoresis. The results showed that there was no allele-frequency overlap between any of these mussel taxa, thus implying little or no genetic relatedness between them. A morphological examination showed that the previously unreported mytilid has a pitted resilial ridge (similar to that of Perna), an anterior adductor muscle (unlike either Perna or Choromytilus), and an undivided posterior foot retractor-muscle scar (unlike Perna). Such features are diagnostic of the genus Mytilus. The South African Mytilus has morphological traits that are more characteristic of M. galloprovincialis of the Mediterranean Sea than of the more cosmopolitan M. edulis. which occurs in the northern and southern Pacific and Atlantic oceans. A large heterozygosity in Mytilus sp. argues against a recent dispersal from the Mediterranean Sea via a small founder population. Rather, the presence of Mytilus sp. in South Africa may represent a relict population of a wider geographic distribution of M. galloprovincialis resulting from Pleistocene cooling. However, the warmer water at lower latitudes could have still prevented dispersal of M. edulis, a species adapted to colder waters.     

A note on the stomach contents of fur seals Arctocephalus pusillus pusillus beached on the south-east coast of South Africa

The stomach contents of 36 South African fur seals beached over a 20 year period along the south-east coast of South Africa were examined. In all, 15 fish and nine cephalopod prey types were identified. Five species of fish (Merluccius capensis, Trachurus trachurus capensis, Cynoglossus zanzibarensis, Pterogymnus laniarius, Austroglossus pectoralis) and two cephalopods (Loligo vulgaris reynaudii, Octopus sp.) were of major importance in the diet. The proportion of demersal species in the diet is higher than previously reported, suggesting that the seals forage extensively on the sea floor. The most important fish species in the diet was M. capensis, and the most important cephalopod was L. v. reynaudii. Male and female seals showed distinct prey selection, suggesting possible intraspecific resource partitioning. There is no evidence of competition between seals and other top predators.