5个湖泊河川沙塘鳢(Odontobutis potamophila)种群线粒体细胞色素b基因的遗传变异分析

通过对5个湖泊的河川沙塘鳢种群的线粒体DNA细胞色素b基因进行PCR扩增、测序,获得1141 bp的序列全长.序列分析显示,cyt b基因序列中A+T含量(55.8%)略高于G+C含量(44.2%),共检测到806个多态位点,115个样本得到87个单倍型,平均单倍型多样性为0.969±0.012,核苷酸多样性为0.20081±0.00742,遗传多样性表现高度多样性.太湖种群与大纵湖种群间的遗传距离最近,为0.137,巢湖种群和大纵湖种群之间遗传距离最远,为0.424.分子方差分析表明,群体间遗传分化系数Fst为0.531,变异来自群体内及群体间.cyt b基因序列构建的UPGMA系统进化树显示,5个种群分化成不同的分支系谱,种群间存在的基因交流较少.     

巢湖沉积植硅体组合及中全新世以来的环境演变

尽管以前对眼虫进行过大量的形态发育研究和基于核糖体RNA基因的系统发育分析,但对于株系之间的关系仍然知之甚少．因其形态特征有限并且易变,很难鉴定眼虫的相似种和同种内不同的株．作者利用微卫星DNA指纹图谱,在七株眼虫中扩增了七个微卫星DNA位点,成功扩增的六个微卫星引物都得到了四到八个条带．从微卫星DNA指纹图谱计算得到的相似性系数范围从0．000到0．957．根据相似性系数得到的树状结构,七株眼虫在距离为0．9346处分为三支:E．mutabilis,E．intermedia和E．gracilis．其中,五株E．gracilis分为两组:来自日本的和美国的．不同地区的株得到不同的基因型,并初步分析了它们之间的关系．研究表明七株眼虫根据微卫星DNA指纹图谱被明显区分开．微卫星DNA指纹图谱具有很高的分辨率,是鉴定和区分原生动物相似种和同种内不同株的一种有用的新方法．     

我国五大湖三角帆蚌群体ITS-1序列变异分析

对我国五大淡水湖:鄱阳湖、洞庭湖、太湖、巢湖、洪泽湖,鄱阳湖内包括进贤、余干、珠湖、都昌、湖口、永修,合计10个群体三角帆蚌78个个体核糖体DNA基因转录间隔子ITS-1进行PCR扩增、序列测定,获得78条长度为430 bp的同源序列.同源基因序列分析显示,五大淡水湖10个群体三角帆蚌78条ITS-1序列片段,G C的含量都明显高于A T的含量.都阳湖三角帆蚌的核苷酸多态性指数最高,而巢湖的核苷酸多样性指数最低.基于ITS-1序列片段的遗传距离表明,鄱阳湖内六个点群体间遗传距离很小,在0.071到0.0092之间.五大湖间三角帆蚌群体遗传距离较远,在0.0752到O.1381之间.ITS-1序列片段构建系统树显示,鄱阳湖6个群体聚在了一起为单独一支,并与巢湖群体亲缘关系相近.洞庭湖群体和洪泽湖群体亲缘关系相近,单独为一支.太湖群体从都阳湖、巢湖群体分离开来,单独为一支.     

刀鲚与湖鲚线粒体细胞色素b基因片段多态性及遗传关系

使用线粒体细胞色素6基因片段序列为分子标记,分析了刀鲚和湖鲚的遗传多态性及遗传关系．在两个群体中共检测到5种不同的单倍型．刀鲚和湖鲚的单倍型多样性指数分别为0．9000和0．7000;核苷酸多样性指数分别为0．3763％和0．4301％．分子方差分析显示两者遗传分化的水平很低,群体间的差异对总的变异没有贡献．所以认为它们之间的差异尚未达到亚种水平,这一结果支持湖鲚是刀鲚的一个地理种群的观点．     

长江中下游5个湖泊黄颡鱼(Pelteobagrus fulvidraco)种群线粒体细胞色素b基因的遗传变异分析

对长江中下游5个湖泊的黄颡鱼种群的线粒体DNA细胞色素b基因进行了PCR扩增、测序,获得了955 bp的序列.分析显示,cyt b序列中A+T含量略高于G+C含量,共检测到54个变异位点,60个样本得到37个单倍型,平均单倍型多样性为0.945±0.018,核苷酸多样性为0.00419±0.00043,遗传多样性表现中等.太湖种群与滆湖种群间的遗传距离最远为0.00651,鄱阳湖种群和巢湖种群之间遗传距离最近为0.00375.分子方差分析(AMOVA)表明,群体间遗传分化系数F_st为0.0684,几乎所有变异都来自群体内,群体间遗传分化极小.cyt b序列构建UPGMA系统进化树显示,5个种群没有分化成不同的分枝谱系,种群间存在广泛的基因交流.     

基于COI基因序列的太湖新银鱼遗传多样性

利用线粒体细胞色素C氧化酶I(COI)分子标记分析长江中下游太湖新银鱼(Neosalanx taihuensis)8个地理种群132个样本的遗传多样性.该基因630 bp片段的碱基序列共检出8个核苷酸变异位点(变异率1.27%),其中局域性单倍型居多(75%),群体单倍型多样性较高(h=0.576±0.036),而核苷酸多样性较低(π=0.00112±0.00204).不同地理种群遗传多样性差异显著:有人工移植历史种群遗传多样性较高、隔离度较高的种群遗传多样性较低,但大部分的遗传变异来自于种群内(54.83%),反映出地理隔离和人为干扰对太湖新银鱼遗传格局影响显著.研究表明COI基因适于银鱼科鱼类物种鉴别和系统发育研究,同时可为同种种群间遗传关系分析提供一定的信息.     

基于线粒体DNA控制区的南四湖湖鲚(Coilia ectenes taihuensis)群体遗传结构和种群扩散

为推断南四湖湖鲚种群来源,采用线粒体控制区(D-loop)基因序列测定技术,对3个不同水域湖鲚(Coilia ectenes taihuensis)种群的遗传结构特征及其变异进行研究,并分析它们之间的系统发育关系.结果表明3个不同湖鲚种群的平均单倍型多样性和核苷酸多样性分别为0.9646和0.0097,除3个单倍型共享外,不同地理单元中具有较高的单倍型多样性.AMOVA和成对Fst值分析均表明,不同湖泊群体间未发现明显的遗传分化,各地理单元中的单倍型相互散布在不同的种群中.系统发育分析结果显示,不同湖泊湖鲚种群的单倍型形成3个分支,但每一地理群体没有显示出明显的地理位置与单倍型间的对应关系.结合南四湖历史资料和当前渔业监测结果,推测湖鲚为2002年实施长江向南四湖应急补水时洪泽湖湖鲚迁移扩散进而在南四湖建群的.     

五个湖泊中华刺鳅(Mastacembelus sinensis)种群线粒体细胞色素b遗传多样性分析

采用特异性引物对中华刺鳅基因组DNA进行扩增和测序,获得了江苏省5个湖泊的中华刺鳅种群线粒体cyt b基因767 bp的序列.分析表明,cyt b基因中A+T含量略高于G+C含量,144个中华刺鳅共获得cyt b基因单倍型28个,变异位点38个,其中单倍型Hap1分布最为广泛,可能为祖先型单倍型.平均单倍型多样性和平均核苷酸多样性指数分别为0.58751和0.00214,遗传多样性较低.群体间遗传分化系数为0.0356,绝大多数的遗传变异都来自群体内部,而群体间的遗传分化极小.构建的系统进化树未出现明显的以单个湖泊群体的聚簇,5个湖泊的种群间基因交流极其强烈.研究结果表明,当前5个湖泊的中华刺鳅遗传多样性水平比较低,亟待加强保护.     

在墨西哥修订的麦加利地震烈度随距离的衰减

本文对墨西哥地震提出了两个预测修订麦加利地震烈度（Ⅰ）随距离（D）衰减的关系式：1nI=B0 B11n(D/D′) B2(D-D′) B31nMs 1nI=B0 B1(D/D′) B21n(D-D′) B31nMs.Ms为地震面波震级，D′是与图中地震最大烈度I′（或与Ms)有关的距离。系数Bi(i=0,1,2,3)是用最小二乘观念将32次地震的烈度图中的资料与这两人关系式相似合得来的。这些震例根据其震中位置、震源机制及深度分为三组，即消减带地震、墨西哥中南部的中源地震及沿横贯墨西哥火山带的浅源壳内地震。用所提出的关系式预测的（I）值可以和为似合中没有包括的历史地震测得的（I）值很好地加以比较。从参数研究中得出的结果表明，（I）随（D）的衰减对于上述三组震型中的每一组都是不同的。当距离不超过200公里时，与消减带有关的地震比墨西哥中南部地震有更大的衰减；当距离大于200公里时，观测结果则相反。在横贯墨西哥火山带上发生的地震随距离的衰减比其它两个地区的地震更大。根据这些结果，在墨西哥应用几个衰减关系式去估计场地地震灾害似乎是可行的，这要取决于考虑之中的特殊发震地质构造与地震路径。     

基于多维度指数的雅鲁藏布江鱼类多样性评价及群落构建过程分析

雅鲁藏布江是我国西藏地区最大的河流,孕育着独特的水生生物资源。近年来随着人类活动的干扰与河流开发的推进,亟待对该流域水生生物多样性进行全面调查评估。本研究基于雅鲁藏布江全流域的鱼类资源调查数据,整合物种多样性、功能多样性和系统发育多样性3个维度12项指数,对该流域鱼类多样性进行评价分析。结果显示,24个调查样点中共采集到37种鱼类,隶属于3目7科24属;其中土著鱼类27种,外来鱼类10种;鲤形目鲤科鱼类为优势类群。基于Bray-Curtis相异度的层次聚类可将雅鲁藏布江鱼类群落划分为4组,表现为帕隆藏布汇口以上/以下江段及两个江段内干支流间存在较大差异,这与区域生物地理学过程及河流环境梯度密切相关。利用12项多样性指数对各组群的鱼类多样性进行评估,结果表明,除Simpson多样性指数、Pielou均匀度指数、平均配对种间系统发育距离指数和平均最近种间系统发育距离(MNTD)指数外,其他指数检测到组间的显著性差异。不同多样性指数之间的相关关系表现各异:与丰富度相关的多项指数间存在显著或极显著的正相关,功能离散度指数和MNTD指数与其他指数间多存在显著或极显著的负相关,表明不同类别的多样性指数各自具有独特的指示价值。基于群落功能性状结构和系统发育结构的检验结果显示,大多数样点驱动鱼类群落聚合的过程为种间竞争排斥,推测与雅鲁藏布江水体营养贫瘠、食物来源稀缺导致的种间营养竞争关系紧张有关。本文整合多维度多样性指数对雅鲁藏布江流域鱼类多样性及群落构建过程进行探究,以期为该流域鱼类资源保护和管理提供科学依据,也为应用多维度指数评价淡水鱼类多样性提供参考借鉴。     

四个鲤鱼种群ITS-1序列的遗传变异分析

对我国四个鲤鱼种群的核糖体DNA内转录间隔区ITS-1进行了PCR扩增、测序.序列分析显示,370bp的ITS-1序列中GC含量明显高于AT含量,共检测到34个变异位点,96个样本得到14个单倍型,平均单倍型多样性为0.637±0.055,核苷酸多样性为0.00857±0.00200,遗传多样性表现较低.黑龙江野鲤种群...     

Temporal estimates of genetic diversity in some Mytilus galloprovincialis populations impacted by the Prestige oil-spill

The sinking of the tanker Prestige in November 2002 off the coast of Galicia resulted in the release of about 60,000 tons of heavy oil. The oil-spill provoked a serious environmental impact in Spanish and French coasts, which biological consequences are still being assessed. In this study we address the temporal dynamics of genetic diversity in some mussel populations impacted by the oil-spill. Changes in genetic diversity can be measured in natural populations provided that serial samples are available from before (year 2000) and after (years 2003, 2005) the oil-spill. Analyses of seven microsatellites indicate a weak but significant increase of genetic variation after the spill. This phenomenon is interpreted herein in terms of a balance between a enhanced genome mutability on microsatellite variation and a low genetic drift due to toxicants and asphyxia although other stochastic phenomena cannot be ruled out. Per locus annotation showed that in spite of the allelic changes observed in the period 2000-2005, the final size of most allelic series remained quite alike to those of year 2000. Present genetic data suggest that the genotoxic impact of the Prestige spill did not compromise the genetic diversity of studied mussel populations, at least regarding the genetic markers analysed.     

Molecular and morphometric characterisation of the invasive signal crayfish populations in Croatia

The signal crayfish Pacifastacus leniusculus (Dana, 1852) is a native species to North America. It was introduced to Europe and Japan where it rapidly spread as an invasive species. In Croatia, it is recorded in the rivers Mura and Drava, where it spread downstream from Slovenia, and in the Korana River, where it has been recently illegally introduced. In the invaded areas, signal crayfish outcompetes native crayfish species. Since the knowledge on the genetic diversity of this invasive species is limited, microsatellite markers and sequences of mitochondrial gene for 16S rRNA were analysed to explore the genetic relations between the two Croatian populations (Mura and Korana rivers) as well as their relation to other already studied European populations. Moreover, 16S rRNA sequence fragments of Croatian samples were compared with those from the native range in the west North America. Morphometric characteristics were also studied to determine if there are significant differences between studied populations and if these are concordant with the genetic analyses results. Also, morphometric data were used to assign Croatian signal crayfish into subspecies classification according to Miller’s discriminant function formula, and to compare claw surface area among Croatian, Japanese and North American populations. Based on the results of morphometric characteristics Croatian samples showed Pacifastacus leniusculus leniusculus-like morphology. Phylogenetic reconstruction based on 16S rRNA, positioned Croatian samples into P. leniusculus sensu Larson et al. (2012). Results on microsatellite markers showed that the genetic diversity of P. leniusculus in the Mura River population is slightly higher compared to the Korana River population, but these two populations do not form separated genetic clusters. This study contributes to the knowledge on genetic variability and morphometric characteristics of signal crayfish in Europe and further understanding of its success as an invasive species.     

Genetic impact of the Prestige oil spill in wild populations of a poor dispersal marine snail from intertidal rocky shores

In November 2002, the sinking of the Prestige cargo ship produced an oil spill of 60,000 tons that affected many areas along the Galician coast (in the northwest of Spain). In a number of rocky shore sites, most organisms (particularly marine mollusks) were nearly extinct at a local scale. We tested whether the local bottleneck/extinction that occurred in affected localities caused any detectable reduction of the genetic diversity in the marine snail Littorina saxatilis, an ovoviviparous rocky shore model species characterized by a low dispersal ability, high population density, and wide distribution range. We compared the level of genetic variation and population differentiation between affected (polluted) and control sites located in seven geographical areas (three sites per area, one impacted and two controls, and two replicates per site) one and a half years after the spill. The analysis included molecular marker variation (microsatellite and AFLP loci) and quantitative trait genetic variation for shell variables in embryos extracted from pregnant females. Our results indicate that the affected populations did not show a significant overall reduction in genetic diversity when compared to the controls, suggesting that the species is highly resistant to losing genetic variability as a consequence of a local short-term pollution process in spite of its low dispersal ability and direct development. However, some genetic effects were detected in the polluted populations, particularly for quantitative shell traits and AFLPs, consistent with local adaptations resulting from the fuel contamination.