Biomarker responses in Macoma nasuta (Bivalvia) exposed to sediments from northern San Francisco Bay

Our study investigates biomarker responses and survival of Macoma nasuta exposed to sediments collected from six locations in northern San Francisco Bay. Biomarkers analyzed were stress proteins (hsp70) in gill, mantle and digestive gland, lysosomal membrane damage and histopathologic lesions. Sediments and clam tissues were analyzed for a comprehensive suite of heavy metals and trace organic pollutants. Sediment grain size and organic carbon content were determined. Clams accumulated metals, polyaromatic hydrocarbons (PAHs) and organochlorine pesticides (aldrin and p,p^′-DDT and its metabolites p,p^′-DDD and p,p^′-DDE). Pearson and Spearman correlation analysis revealed that mortality, hsp70 in gill and histopathologic lesion scores in gonads, and lysosomal membrane damage were significantly correlated with tissue concentrations of DDT and/or its metabolites. Tissue concentrations of metals, in particular nickel, chromium, and copper, were associated with macrophage aggregates in digestive gland and germ cell necrosis. Cadmium was linked to mortality and lysosomal membrane damage.     

Comparison of β-dimethylsulfoniopropionate (DMSP) levels in two mediterranean ecosystems with different trophic levels

β-dimethylsulfoniopropionate (DMSP) and dimethylsulfide (DMS) concentrations were recorded from September 1999 to September 2000 in two geographically close ecosystems, differently affected by eutrophication: the Little Bay of Toulon and the Niel Bay (N.W. Mediterranean Sea, France). Little Bay had higher nutrient levels ([NO₃⁻]_max. = 30.3 μM; [PO₄³⁻]_max. = 0.46 μM) and higher chlorophyll a concentrations ([chl a]_mean = 2.4 μg/L) compared to Niel Bay ([NO₃⁻]_max. = 19.7 μM; [PO₄³⁻]_max. = 0.17 μM; [chl a]_mean = 0.4 μg/L). In the two sites, we measured dissolved (DMSP_d < 0.2 μm) and particulate DMSP (DMSP_p > 0.2 μm) concentrations. The DMSP_p was particularly analysed in the 0.2–5, 5–90 and > 90 μm fractions. In the eutrophicated Little Bay, DMSP_d concentrations showed a clear seasonality with high values from January to March (124–148 nM). The temporal profile of the DMSP_p concentrations was similar, peaking in February–March (38–59 nM). In the less eutrophic Niel Bay, DMSP_p concentrations were much lower (6–9 nM in March–April), whereas DMSP_d concentrations were relatively high (110–92 nM in February–March). DMS concentrations were elevated from the end of the winter to the spring in Little Bay, ranging from 3 nM in October to 134 nM in March. In the less eutrophic Niel Bay, lower DMS levels were observed, generally not exceeding 20 nM. Each particulate fraction (0.2–5; 5–90; > 90 μm) contained less DMSP in Niel Bay than in Little Bay. At both sites, the 5–90 μm fraction made up most of the DMSP_p. This 5–90 μm fraction consisted of microphytoplankton, principally Dinophyceae and Bacillariophyceae. The 5–90 μm biomass calculated from cell biovolumes, was more abundant in Little Bay where the bloom at the end of the winter (165 μg/L in March) occurred at the same time as the DMSP peaks. The estimated DMSP_p to biomass ratio for the 5–90 μm fraction was always higher in Little Bay than in Niel Bay. This suggests that the high DMSP levels recorded in Little Bay were not only due to a large Dinophyceae presence in this ecosystem. Indeed, the peak of DMSP_p to biomass ratio obtained from cell biovolumes (0.23 nmol/μg in March) was consistent with the proliferation of Alexandrium minutum. This Dinophyceae species may account for between 50% (2894 cells/L) and 63% (4914 cells/L) of the total phytoplankton abundance in the Little Bay of Toulon.     

Colonization, succession, and nutrition of macrobenthic assemblages in a restored wetland at Tijuana Estuary, California

Modes of colonization, the successional trajectory, and trophic recovery of a macrofaunal community were analyzed over 19 months in the Friendship marsh, a 20-acre restored wetland in Tijuana Estuary, California. Traditional techniques for quantifying macrofaunal communities were combined with emerging stable isotopic approaches for evaluation of trophic recovery, making comparisons with a nearby natural Spartina foliosa habitat. Life history-based predictions successfully identified major colonization modes, although most taxa employed a variety of tactics for colonizing the restored marsh. The presence of S. foliosa did not seem to affect macrofaunal colonization or succession at the scale of this study. However, soil organic matter content in the restored marsh was positively correlated with insect densities, and high initial salinities may have limited the success of early colonists. Total macrofaunal densities recovered to natural marsh levels after 14 months and diversity, measured as species richness and the Shannon index (H′), was comparable to the natural marsh by 19 months. Some compositional disparities between the natural and created communities persisted after 19 months, including lower percentages of surface-feeding polychaetes (Polydora spp.) and higher percentages of dipteran insects and turbellarians in the Friendship marsh. As surficial structural similarity of infaunal communities between the Friendship and natural habitat was achieved, isotopic analyses revealed a simultaneous trajectory towards recovery of trophic structure. Enriched δ¹³C signatures of benthic microalgae and infauna, observed in the restored marsh shortly after establishment compared to natural Spartina habitat, recovered after 19 months. However, the depletion in δ¹⁵N signatures of macrofauna in the Friendship marsh indicated consumption of microalgae, particularly nitrogen-fixing cyanobacteria, while macroalgae and Spartina made a larger contribution to macrofaunal diets in the natural habitat. Future successional studies must continue to develop and employ novel combinations of techniques for evaluating structural and functional recovery of disturbed and created habitats.     

Stress protein expression in Ampelisca abdita (Amphipoda) exposed to sediments from San Francisco Bay

Stress proteins (heat shock proteins, hsps) form part of the cellular protein repair system, and are induced by a wide variety of Stressors. To determine their suitability as tools for assessing sublethal sediment toxicity, we measured levels of members of the stress protein families hsp60 and hsp70 in benthic estuarine amphipods (Ampelisca abdita) exposed to sediments from 23 different sampling sites in San Francisco Bay for 10 d. Concentrations of sediment-associated xenobiotics were determined. Per cent survival was recorded and surviving animals were analysed for stress proteins using western blotting techniques. An inverse correlation (r² = 0.44) was seen between amphipod survival and hsp64 levels, and hsp64 levels were positively correlated with concentrations of total polycyclic aromatic hydrocarbons (PAHs) (r² = 0.5). Principal component analysis revealed that amphipod mortality was linked to a combination of several PAHs (phenanthrene, fluoranthene, pyrene, benzo(a)pyrene) and di-n-butylphthalate at southern San Francisco Bay sites. At northern San Francisco Bay sites, negative correlations were found between hsp64 levels and organotin compounds (MBT, DBT, TBT), and between hsp71 levels and the PAHs, benzo (b,k)fluoranthene and benzo(G,H,I)perylene, suggesting an inhibitory effect of these compounds on stress protein expression.     

Anthropogenic influences on shoreline and nearshore evolution in the San Francisco Bay coastal system

Analysis of four historical bathymetric surveys over a 132-year period has revealed significant changes to the morphology of the San Francisco Bar, an ebb-tidal delta at the mouth of San Francisco Bay estuary. From 1873 to 2005 the San Francisco Bar vertically-eroded an average of 80 cm over a 125 km² area, which equates to a total volume loss of 100 ± 52 million m³ of fine- to coarse-grained sand. Comparison of the surveys indicates the entire ebb-tidal delta contracted radially, with the crest moving landward an average of 1 km. Long-term erosion of the ebb-tidal delta is hypothesized to be due to a reduction in the tidal prism of San Francisco Bay and a decrease in coastal sediment supply, both as a result of anthropogenic activities. Prior research indicates that the tidal prism of the estuary was reduced by 9% from filling, diking, and sedimentation. Compilation of historical records dating back to 1900 reveals that a minimum of 200 million m³ of sediment has been permanently removed from the San Francisco Bay coastal system through dredging, aggregate mining, and borrow pit mining. Of this total, ∼54 million m³ of sand-sized or coarser sediment was removed from central San Francisco Bay. With grain sizes comparable to the ebb-tidal delta, and its direct connection to the bay mouth, removal of sediments from central San Francisco Bay may limit the sand supply to the delta and open coast beaches.     

Reconstructing estuarine conditions: oyster shells as recorders of environmental change, Southwest Florida

Live-collected shells of the oyster, Crassostrea virginica, contain geochemical records of modern temperature and salinity, so records of prehistoric conditions may be obtained from subfossil shells. Restoration of channelized watersheds in Florida is receiving much attention, and plans for targeted watersheds require information about estuarine conditions before channelization. Lack of historical records necessitates alternative methods to understand pre-disturbance conditions. A ¹⁴C-calibrated, amino-acid geochronology based on racemization of glutamic acid yielded ages ranging from 190–1220 AD and from 1270–1860 AD for subfossil oysters from Blackwater River (near-natural watershed) and for Faka-Union Bay (channelized watershed), respectively. δ¹⁸O and δ¹³C values of subfossil shells from Blackwater River indicate salinity and summer temperatures similar to present. Winter temperatures recorded in shells from 190, 590, 720, and 1050 AD appear 1–5 °C colder than present winter temperatures, whereas the shell from 1220 AD records winter temperatures similar to modern winter temperatures. These temperature shifts may indicate change in climate or natural seasonal variation of winter temperature from year to year. Subfossils from Faka-Union Bay may reflect a complicated hydrology, which cannot be evaluated by isotopic compositions alone and demonstrates the need for development of independent elemental proxies for temperature and salinity. Decreases in δ¹³C from subfossil to modern shells may in part result from CO₂ added to the atmosphere from fossil fuel burning (the Suess effect). Subfossil δ¹³C that is >1‰ more positive than modern shells suggest a change in the dominant carbon sources from terrestrial C₄ or aquatic plants to C₃ plants (mangroves).     

Strong pathways for incorporation of terrestrially derived organic matter into benthic communities

In Fiordland, New Zealand, large volumes of organic matter are deposited into the marine environment from pristine forested catchments. Analyses of δ¹⁵N, δ¹³C and δ³⁴S were employed to determine whether these inputs were contributing to marine food webs via assimilation by common macroinvertebrates inhabiting the inner reaches of the fjords. Terrestrially derived organic matter (TOM) had values of δ¹⁵N, δ¹³C and δ³⁴S that were distinct from other carbon source pools, providing sufficient power to quantify the contribution of TOM to the benthic food web. Isotopic values among macroinvertebrates varied significantly, with consistently low values of δ¹⁵N, δ¹³C and δ³⁴S for the abundant deposit feeders Echinocardium cordatum (Echinodermata) and Pectinaria australis (Annelida), indicating assimilation of TOM. High concentrations of bacterial fatty acid biomarkers in E. cordatum, and values of δ¹³C of these biomarkers similar to TOM (−27 to −30‰) confirmed that TOM is indirectly assimilated by these sea urchins via heterotrophic bacteria. TOM was also found to enter the infaunal food web via chemoautotrophic bacteria that live symbiotically within Solemya parkinsonii (Bivalvia). Echinocardium cordatum, Pectinaria australis and S. parkinsonii comprised up to 33.5% of the biomass of the macroinfaunal community, and thus represent strong pathways for movement of organic matter from the forested catchments into the benthic food web. This demonstration of connectivity among adjacent marine and terrestrial habitats has important implications for coastal land management, and highlights the importance of intact coastal forests to marine ecosystem function.     

Sources and preservation of organic matter in Plum Island salt marsh sediments (MA, USA): long-chain n-alkanes and stable carbon isotope compositions

Elemental (TOC, TN, C/N) and stable carbon isotopic (δ¹³C) compositions and n-alkane (nC_16–38) concentrations were measured for Spartina alterniflora, a C₄ marsh grass, Typha latifolia, a C₃ marsh grass, and three sediment cores collected from middle and upper estuarine sites from the Plum Island salt marshes. Our results indicated that the organic matter preserved in the sediments was highly affected by the marsh plants that dominated the sampling sites. δ¹³C values of organic matter preserved in the upper fresh water site sediment were more negative (−23.0±0.3‰) as affected by the C₃ plants than the values of organic matter preserved in the sediments of middle (−18.9±0.8‰) and mud flat sites (−19.4±0.1‰) as influenced mainly by the C₄ marsh plants. The distribution of n-alkanes measured in all sediments showed similar patterns as those determined in the marsh grasses S. alterniflora and T. latifolia, and nC₂₁ to nC₃₃ long-chain n-alkanes were the major compounds determined in all sediment samples. The strong odd-to-even carbon numbered n-alkane predominance was found in all three sediments and nC₂₉ was the most abundant homologue in all samples measured. Both δ¹³C compositions of organic matter and n-alkane distributions in these sediments indicate that the marsh plants could contribute significant amount of organic matter preserved in Plum Island salt marsh sediments. This suggests that salt marshes play an important role in the cycling of nutrients and organic carbon in the estuary and adjacent coastal waters.     

Size-dependent distribution and feeding habits of Terebralia palustris in mangrove habitats of Gazi Bay, Kenya

The gastropod Terebralia palustris often dominates the surface of muddy to sandy substrates of intertidal mudflats and mangrove forests, where they clearly destabilize the sediment. In the present study, it was investigated whether and to what extent the behaviour of juvenile and adult snails differs among habitats (mudflat vs. mangrove stand) in a Sonneratia alba mangal at Gazi Bay, Kenya. For this purpose we: (1) examined their distribution along three land–sea transects; and (2) applied stable isotope analysis to determine the feeding patterns of different-sized snails from the mangrove and mudflat habitats. Additionally, we investigated if these gastropods exert an impact on microphytobenthic (diatom) biomass, and whether this is size-dependent. The latter objective was met by either enclosing or excluding different-sized snails from experimental cages on the intertidal mudflat and the subsequent assessment of a change in pigment concentration of the sediment surface. In agreement with several previous studies conducted in other mangroves and geographical locations, a spatial segregation was demonstrated between juveniles (more common on the mudflat) and adults (more common in the mangrove forest). On the intertidal mudflat juveniles avoided sediment patches characterized by highly saline water in intertidal pools and a high mud content, while adults tended to dwell on substrates covered by a high amount of leaf litter. Stable carbon isotope analysis of the foot tissue of snails sampled from the S. alba stand and the mudflat indicated a transition in food source when a shell length of 51 mm is reached. Considering the δ¹³C value of juveniles, it seems they might be selecting for microphytobenthos, which might explain their preference for the mudflat. The diet of size classes found in both habitats did not differ significantly, although juveniles inhabiting the mangrove forest were slightly more depleted in ¹³C compared to those residing on the mudflat. Assuming juveniles feed on benthic microalgae and considering the lower microalgal biomass inside the mangrove forest, this may be a consequence of a higher contribution of other, more ¹³C depleted organic carbon sources, like phytoplankton, to their diet. Experimental results indicate a negative, but insignificant, impact on benthic diatom biomass by juveniles (due to grazing) and adults (due to physical disturbance). This finding seems to be in agreement with the results of the stable carbon isotope analysis, strongly suggesting the selective feeding of juvenile T. palustris on benthic diatoms.     

Observations of a mass occurrence of Macoma balthica larvae in midsummer

In 1995 the seasonal development of concentrations of both phytoplankton and larvae of the bivalve Macoma balthica was studied in the coastal zone behind the back-barrier island of Spiekeroog (German Wadden Sea). In July/August larvae reached maximum concentrations of about 1000 to 4200 ind. m⁻³ (depending on the sampling site and tidal period), probably in relation to a phytoplankton bloom in July. This observation of an unusually late maximum of Macoma larvae is discussed in detail in connection with the recent literature available about spawning of M. balthica in the Wadden Sea.     

Does transported seagrass provide an important trophic link in unvegetated, nearshore areas?

The contribution of detritus from seagrass and other primary producers to faunal production in unvegetated nearshore areas was examined primarily using stable isotopes. Fish, macroinvertebrates, meiofauna and primary producers (seagrasses, macroalgae, seston and benthic microalgae) were sampled from sites in south-western Australia. All samples were analysed for δ¹³C and δ¹⁵N values and fish gut contents were determined. δ¹³C values for seagrasses in the region were high compared to other macrophytes, ranging from 49.9 to −8.2‰ compared to −19.8 to −12.6‰ for macroalgae. The δ¹⁵N values ranged between 4.0 and 7.7‰ for the red, brown and green algae, and between 3.2 and 5.9‰ for seagrasses. Seston and benthic microalgae samples had a mean δ¹³C value of −12.8 and −14.0‰, respectively, and their δ¹⁵N values were comparable to the macroalgae. All invertebrate fauna had mean δ¹³C values considerably lower than seagrasses. However, individual samples harpacticoid copepods and polychaetes had a value as high as −11.7‰. δ¹⁵N values for consumers were higher than those of the primary producers, except for copepods and amphipods. The δ¹³C values for fish had a relatively small range, between −16.6 and −13.1‰, and the δ¹⁵N values of fish were elevated compared to the invertebrates and primary producers, ranging mostly between 10.0 and 12.6‰. Mixing model analysis based on δ¹³C values indicated that seagrass ranked low as a likely carbon source for all invertebrates other than harpacticoid copepods at a single site and some samples of polychaetes. The δ¹³C values for fish were similar to those of a combination of harpacticoid and calanoid copepods, amphipods and polychaetes. The consumption of harpacticoid copepods by some fish species indicates that Amphibolis and Posidonia species in south-western Australia can contribute to the food web of unvegetated nearshore areas as detritus, but brown algae is likely to make a greater contribution. At least for the time of year that was sampled, the flow of detrital seagrass material into the foodweb may be mediated by specific detrivores, in this case harpactacoid copepods, rather than by all detritivores.     

Molluscan assemblages of seagrass-covered and bare intertidal flats on the Banc d'Arguin, Mauritania, in relation to characteristics of sediment and organic matter

The Banc d'Arguin, a non-estuarine area of shallows and intertidal flats off the tropical Saharan coast of Mauritania, is characterised by extensive intertidal and subtidal seagrass beds. We examined the characteristics of intertidal seagrass (Zostera noltii) meadows and bare areas in terms of the presence and abundance of molluscs (gastropods and bivalves). To explain observed differences between molluscan assemblages in seagrass and bare patches, some aspects of the feeding habitat (top-5 mm of the sediment) and of food (organic materials) of molluscs were examined. The novelty of this study is that phytopigments were measured and identified to assess source and level of decay (freshness) of organic material in the sediment and to study their importance as an explanatory variable for the distribution of molluscs. Over an area of 36 km² of intertidal flats, at 12 sites, paired comparisons were made between seagrass-covered and nearby bare patches. Within seagrass meadows, dry mass of living seagrass was large and amounted to 180 ±10 g AFDM m^− 2 (range 75–240). Containing twice the amount of silt per unit dry sediment mass, seagrass sediments were muddier than bare areas; the relative amount of organic material was also larger. The total number of species of bivalves and gastropods amounted to 27, 14 of which were found only in seagrass areas, 4 only in bare and 9 in both types of habitat. Among the three numerically most abundant species, the bivalves Anadara senilis, Dosinia hepatica and Loripes lacteus, the first was numerically most abundant in bare and the other two in seagrass-covered areas. Bare intertidal areas had greater mean total biomass of molluscs (80.5 g AFDM m^− 2) than seagrass meadows (30.0 g AFDM m^− 2). In both habitats, the bulk of the biomass was made up by A. senilis. Excluding this species, bare mudflats contained on average only 3.1 g AFDM m^− 2 and seagrass meadows 6.9 g AFDM m^− 2. As compared to previous surveys in 1980–1986, the biomass of A. senilis had increased almost 10-fold and D. hepatica, previously found in very small numbers, had become the most numerous species. However, the total biomass excluding that of A. senilis was similar. Concentrations of phytopigments were similar to those observed at temperate mudflats, indicating that the Banc d'Arguin might not be as oligotrophic as previously thought. Per unit of dry sediment mass, smaller amounts of phytopigments were found in bare than in seagrass areas. Per unit of dry organic material, bare sediments contained most (fresh) phytopigments. This suggests that in seagrass-covered meadows the organic material is more degraded than in bare sediments. Overall, the composition of phytopigments, quite surprisingly, indicated a benthic-diatom-dominated trophic system. Multivariate statistics revealed that patterns of zoobenthic assemblages were correlated with patterns of a combination of four environmental parameters: grain size of the sediment, amount of fresh phytopigments and amounts of leaves and roots of seagrass.     

Association of picophytoplankton distribution with ENSO events in the equatorial Pacific between 145°E and 160°W

Climatological variability of picophytoplankton populations that consisted of >64% of total chlorophyll a concentrations was investigated in the equatorial Pacific. Flow cytometric analysis was conducted along the equator between 145°E and 160°W during three cruises in November–December 1999, January 2001, and January–February 2002. Those cruises were covering the La Niña (1999, 2001) and the pre-El Niño (2002) periods. According to the sea surface temperature (SST) and nitrate concentrations in the surface water, three regions were distinguished spatially, viz., the warm-water region with >28 °C SST and nitrate depletion (<0.1 μmol kg⁻¹), the upwelling region with <28 °C SST and high nitrate (>4 μmol kg⁻¹) water, and the in-between frontal zone with low nitrate (0.1–4 μmol kg⁻¹). Picophytoplankton identified as the groups of Prochlorococcus, Synechococcus and picoeukaryotes showed a distinct spatial heterogeneity in abundance corresponding to the watermass distribution. Prochlorococcus was most abundant in the warm-water region, especially in the nitrate-depleted water with >150×10³ cells ml⁻¹, Synechococcus in the frontal zone with >15×10³ cells ml⁻¹, and picoeukaryotes in the upwelling region with >8×10³ cells ml⁻¹. The warm-water region extended eastward with eastward shift of the frontal zone and the upwelling region during the pre-El Niño period. On the contrary, these regions distributed westward during the La Niña period. These climatological fluctuations of the watermass significantly influenced the distribution of picophytoplankton populations. The most abundant area of Prochlorococcus and Synechococcus extended eastward and picoeukaryotes developed westward during the pre-El Niño period. The spatial heterogeneity of each picophytoplankton group is discussed here in association with spatial variations in nitrate supply, ambient ammonium concentration, and light field.     

Population structure, density and food sources of Terebralia palustris (Potamididae: Gastropoda) in a low intertidal Avicennia marina mangrove stand (Inhaca Island, Mozambique)

Population structure and distribution of Terebralia palustris were compared with the environmental parameters within microhabitats in a monospecific stand of Avicennia marina in southern Mozambique. Stable carbon and nitrogen isotope analyses of T. palustris and potential food sources (leaves, pneumatophore epiphytes, and surface sediments) were examined to establish the feeding preferences of T. palustris. Stable isotope signatures of individuals of different size classes and from different microhabitats were compared with local food sources. Samples of surface sediments 2.5–10 m apart showed some variation (−21.2‰ to −23.0‰) in δ¹³C, probably due to different contributions from seagrasses, microalgae and mangrove leaves, while δ¹⁵N values varied between 8.7‰ and 15.8‰, indicating that there is a very high variability within a small-scale microcosm. Stable isotope signatures differed significantly between the T. palustris size classes and between individuals of the same size class, collected in different microhabitats. Results also suggested that smaller individuals feed on sediment, selecting mainly benthic microalgae, while larger individuals feed on sediment, epiphytes and mangrove leaves. Correlations were found between environmental parameters and gastropod population structure and distribution vs. the feeding preferences of individuals of different size classes and in different microhabitats. While organic content and the abundance of leaves were parameters that correlated best with the total density of gastropods (>85%), the abundance of pneumatophores and leaves, as well as grain size, correlated better with the gastropod size distribution (>65%). Young individuals (height < 3 cm) occur predominantly in microhabitats characterized by a low density of leaf litter and pneumatophores, reduced organic matter and larger grain size, these being characteristic of lower intertidal open areas that favour benthic microalgal growth. With increasing shell height, T. palustris individuals start occupying microhabitats nearer the mangrove trees characterized by large densities of pneumatophores and litter, as well as sediments of smaller grain size, leading to higher organic matter availability in the sediment.     

Short-term under-ice variability of prokaryotic plankton communities in coastal Antarctic waters (Cape Hallett, Ross Sea)

During the 2006 Italian Antarctic expedition a diel sampling was performed close to Cape Hallett (Ross Sea) during the Austral summer. Under-ice seawater samples (4 m) were collected every 2 h for 28 h in order to estimate prokaryotic processes' variability and community structure dynamics. Prokaryotic and viral abundances, exoenzymatic activities (β-glucosidase, chitinase, lipase, alkaline phosphatase and leucine aminopeptidase), prokaryotic carbon production (³H-leucine incorporation) and community structure (Denaturing Gradient Gel Electrophoresis – DGGE fingerprints) were analysed. Results showed that the diel variability of the prokaryotic activity followed a variation in salinity, probably as a consequence of the periodical thawing of sea ice (driven by solar radiation and air temperature cycles), while negligible variation in viral and prokaryotic abundances occurred. The Bacterial and Archaeal community structures underwent an Operational Taxonomic Units (OTUs) temporal shift from the beginning to the end of the sampling, while Flavobacteria-specific primers highlighted high variations in this group possibly related to sea ice melting and substrate release.     

Trophic position of Calanus finmarchicus (Copepoda, Calanoida) in the Trondheim Fjord

The trophic position of Calanus finmarchicus in the Trondheim Fjord in 2004 was determined through stable isotope analyses. Wild specimens were sampled monthly in the fjord and δ¹³C and δ¹⁵N signatures of the developmental stages from CIII to adults were measured. There were statistically significant differences in the δ¹³C and δ¹⁵N signatures of three identified groups: overwintered parental generation, developing new generation and new generation preparing for overwintering. C. finmarchicus individuals raised in a laboratory on a pure algal diet (Dunaliella tertiolecta and Isochrysis galbana) provided stable isotope signatures for purely herbivorous copepods. With these signatures as comparison, the trophic position of C. finmarchicus in the Trondheim Fjord in 2004 was determined as trophic level 2.4, thus indicating omnivory under natural conditions. Additionally, our data suggest that seasonal differences in the δ¹³C signatures of C. finmarchicus are due to the varying lipid content of the different developmental stages.     

Distribution of nitrogenous nutrients and denitrifiers strains in estuarine sediment profiles of the Tanshui River, northern Taiwan

Chemical profiles of both oxidized (nitrate and sulfate) and reduced (ammonium, sulfide, acid-volatile sulfide [AVS], and pyrite) materials and the corresponding distribution of denitrifier microbial communities were measured at low tide in sediments at Guandu in the estuary of the Tanshui River, northern Taiwan in August 2002. Denitrifier strains were isolated for physiological and phylogenic analyses. Based on the distribution of nitrogenous compounds and denitrifier abundances, the vertical profile of Guandu sediments could be separated into four layers: a mixed layer (the top 1 cm of depth, respectively containing 0.82–2.37 and 535.9–475.0 μM of nitrate and ammonium), a nitrate-concentrated layer (1–5 cm in depth, 2.37–0.53 and 475.0–1192.1 μM, respectively), a denitrifier-aggregation layer (5–7 cm in depth, 0.53–0.72 and 1192.1–1430.1 μM, respectively), and an ammonium-enriched layer (7–12 cm in depth, 0.72–0.78 and 1430.1–2196.6 μM, respectively). Denitrifier strains were detected in all layers except for the mixed layer. A variety of metabolic processes by these strains may occur in different layers. Bacillus jeotgali-, Bacillus sphaericus-, and Bacillus firmus-related strains isolated from the nitrate-concentrated layer may be involved in the nitrification-denitrification coupling process due to the relatively low nitrate concentrations (maximum = 2.37 μM), and may contribute to denitrification not nitrification. Bacillus bataviensis- and B. jeotgali-related strains isolated from the denitrifier-aggregation layer comprised the predominant denitrifier population (3.64 × 10⁴ cells/g of denitrifier abundance). They possess the ability of dissimilatory nitrate reduction to ammonium (DNRA). Bacillus jeotgali-related strains and two newly identified strains of GD0705 and GD0706 isolated from the ammonium-enriched layer possibly use fermentative processes as the main metabolic pathway instead of denitrification when nitrate is scarce, and this further supports the high ammonium concentrations (up to 2.20 mM) found in the Guandu sediments. In addition, spore formation also enhances the chance of survival of these strains in the face with such a nitrate-deficient environment.     

The blooms of a cyanobacterium, Microcystis cf. aeruginosa in a severely polluted estuary, the Golden Horn, Turkey

The distribution of toxic cyanobacterium Microcystis cf. aeruginosa in the severely polluted Golden Horn Estuary was studied from 1998 to 2000. Microcystis persisted at the upper estuary where the water circulation was poor and values ranged between 2.9 × 10⁴ and 2.7 × 10⁶ cells ml⁻¹ throughout the study. Simultaneously measured physical (salinity, temperature, rainfall and secchi disc) and chemical parameters (nutrients and dissolved oxygen) were evaluated together with Microcystis data. Although the Microcystis blooms generally occur in summer due to the increase in temperature, the blooms were recorded in winter in the present study. The abundance of Microcystis depended on the variations in salinity and both blooms were recorded below S = 2. A moderate partial correlation between Microcystis abundance and salinity was detected in the presence of temperature, dissolved oxygen and precipitation data (r = −0.561, p = 0.002). The M. cf. aeruginosa abundance was low in the summer when the salinity was higher than winter. A remarkable increase in the eukaryotic phytoplankton abundance following the improvements in the water quality of the estuary occurred, whilst the Microcystis abundance remained below bloom level.     

Distribution, condition, and growth of newly settled southern flounder (Paralichthys lethostigma) in the Galveston Bay Estuary, TX

Several flatfish species, including southern flounder (Paralichthys lethostigma) recruit to estuaries during early life. Therefore, evaluation of estuarine sites and habitats that serve as nurseries is critical to conservation and management. The present study used density data in conjunction with biochemical condition and growth measurements to evaluate settlement sites used by southern flounder in the Galveston Bay Estuary (GBE). In 2005, beam-trawl collections were made in three major sections of the GBE (East Bay, Galveston Bay, West Bay). Three sites were sampled in each bay. Within each sampling site, replicate collections were taken from three habitats: 1) marsh edge (< 1 m depth), 2) intermediate zone (10–20 m from marsh interface;  1 m depth), and 3) bay zone (typically > 100 m from marsh interface; depth > 1 m). Average size of southern flounder collected was 12–19 mm standard length, and peak densities occurred in January and February. Catch data indicated that densities of southern flounder were significantly greater in East Bay (2.75 per 100 m²) than in Galveston Bay (0.91 per 100 m²) or in West Bay (0.45 per 100 m²). Densities were statistically similar among habitats. Otolith-based estimates of age indicated that the majority of southern flounder collected were 35–45 days old and derived from early December to early January hatch-dates. Growth rates were similar among bays and among habitats, with the average growth rate being 0.40 mm day^− 1 (range: 0.21–0.76 mm day^− 1). RNA:DNA was above the established baseline value for nutritional stress, indicating that newly settled southern flounder in the GBE were in relatively high condition. Habitat-specific differences in RNA:DNA ratios were not observed; however, ratios were significantly lower in West Bay (average 8.0) than in East Bay (average 9.5) or in Galveston Bay (average 9.8), suggesting the condition of new recruits may vary spatially within the GBE. Findings from the current study suggest density and condition of newly settled southern flounder vary at the bay scale, suggesting that parts of GBE do not function equally as nurseries.     

Ba, Si, U, Al, Sc, La, Th, C and C/C in a sediment core in the western subarctic Pacific as proxies of past biological production

A sediment core covering the last 145 kyrs was collected in the western subarctic Pacific (WSAP), and analyzed for Ba, U, Al, Sc, La, Yb, Th, biogenic opal (Opal) and organic carbon (C_org) as well as its isotopic ratio (δ¹³C). This study examined the change of past biological production in WSAP with multiple proxies, together with understanding the relation between Loess from the Asian continent and the biological production. The Loess content was estimated from the metal components, Al, Sc, La, Yb and Th. In this high latitude core (50°N), the Loess content was generally high during the glacial periods, but it was also high even in some interglacial periods. The excess amount of Ba relative to the detrital material composition, Ba_ex, showed the best correlation with the Vostok δD (r = 0.72, p < 0.001), indicating that the biological production was lower in the glacial periods than in the interglacials. This corroborates the pervasive correlation between Ba_ex in the polar region, WSAP and the Antarctic Sea, and Antarctic temperature, combined with previous research. This correlation might be explained by the stratification caused by cooling. In addition, the time variations of Ba_ex in WSAP were similar to those of Ba_ex in the Okhotsk Sea and of other proxies (C_org and Opal) in both the Okhotsk and the Bering Sea, indicating the spatial homogeneity of Ba_ex in WSAP including proximal marginal seas. The Opal content was more weakly correlated with the Vostok δD (r = 0.46, p < 0.001) than Ba_ex, reflecting that Opal in WSAP including proximal marginal seas was spatially heterogeneous compared to Ba_ex. While both the C_org content and U_ex, the excess amount of U relative to the detritus composition, were not positively correlated with the Vostok δD, they behaved similarly in the sediments. The positive correlation between δ¹³C and the Vostok δD (r = 0.42, p < 0.001), between δ¹³C and Ba_ex (r = 0.60, p < 0.001) and between δ¹³C and Opal (r = 0.36, p < 0.01) indicates that δ¹³C in WSAP may give some information on the phytoplankton growth rate. There was not a significant correlation between the spatially homogeneous Ba_ex in WSAP and Loess (r = − 0.16, p > 0.01), suggesting that the increase of biological production with the increase of Loess supply during the glacial periods did not occur.