印度洋深海沉积物样品纯培养细菌的分离鉴定

为探索印度洋深海沉积物中纯培养细菌的多样性,本文对采自印度洋12个沉积物样品进行细菌纯培养分离,共获得343株细菌.所有细菌采用16S?rRNA基因进行比对分析,鉴定为4个门:厚壁菌门(Firmicutes)、变形菌门(Proteobacteria)、放线菌门(Actinobacteria)和拟杆菌门(Bacteroi...     

白令海和楚科奇海表层沉积物中多环芳烃降解微生物多样性

为了研究白令海(海盆及陆架)至楚科奇海陆架表层沉积物中多环芳烃(PAHs)降解菌的多样性,并获得新的PAHs降解菌资源。在GC-MS分析沉积物中PAHs种类和含量的基础上,以萘、菲和芘的混合物为唯一碳源和能源对表层沉积物样品进行富集,通过平板分离鉴定可培养菌株,并验证其降解能力;同时利用变性梯度凝胶电泳(DGGE)和Illumina高通量测序技术分析降解菌群结构。GC-MS测定结果表明,14个表层沉积物中PAHs总干质量介于32.99~276.97ng/g。富集菌群中共分离获得51株可培养细菌,平板纯培养、PCR-DGGE及Illumina测序结果均表明,菌群中优势的降解菌是γ-proteobacteria的Marinobacter,Pseudoalteromonas,Pseudomonas和Actinobacteria门的Dietzia菌。此外,Illumina测序结果还表明14个降解菌群在菌群结构组成上,可分为海盆区和陆架区两种类群;同时检测到一些低丰度的海洋专属PAHs降解菌,如Cycloclasticus,Alteromonas和Neptunomonas等。本文结果将加深对白令海及楚科奇海表层沉积物中PAHs降解菌资源与生物多样性的认识。     

Sedimentary characteristics and the implications of cobalt-rich crusts resources at Caiwei Guyot in the Western Pacific Ocean

Abstract

Cobalt-rich crust has attracted increased attention due to their economic value. Studies have indicated that seamounts in the Western Pacific Ocean are rich in cobalt-rich crust resources. The Caiwei Guyot in Western Pacific Ocean is one of the cobalt-rich crust exploration areas contracted between China and the International Seabed Authority. A large volume of research has been conducted to elucidate the tectonic evolution, basement type, sediment type, gravity and magnetic anomaly characteristics, and geochemical characteristics of shallow surface sediments at Caiwei Guyot. However, a research gap exists on the sedimentary strata below the pelagic deposits and above the volcanic basement of the Caiwei Guyot. This paper summarizes that two main types of sediments existing on the top of Caiwei Guyot. The deposition thickness on the top of Caiwei Guyot is characterized by three sedimentary centers and exposed periphery. Pelagic sediments are difficult to form at the northeastern portion and edge area of Caiwei Guyot due to the strong bottom current environment, which makes these areas suitable for crust growth. This paper delineated three cobalt-rich crust prospective areas at the Caiwei Guyot with of significant implications for exploration and mining-lease-block selections at Caiwei Guyot.     

南麂列岛附近海域表层水及沉积物中细菌的丰度及其在环境中的作用

本文描述了南麂列岛附近海域中各类细菌的数量分布状况及其与环境之间的关系，现场调查和实验结果表明：该海区氨化细菌数量极高，对水化学的变化起了重要作用；在所设的站位中有８０％的站位可以检出石油降解细菌；而大肠菌群几乎没有检出。     

东太平洋不同海域多金属结核差异的主控因素

本文以ＤＹ８５－４ 航次在东太平洋的调查为基础,概述了多金属结核在东西两海区的差异;分析了影响这种差异的因素;着重探讨了多金属结核的丰度、品位、覆盖率、Ｍｎ／Ｆｅ、与伴生沉积物、断裂带、火山、侵入岩的关系。发现造成两区结核差异的因素很多,但起主控作用的是断块、火山、岩浆、热液等活动所带来的物质及对海底物理化学环境的影响。     

Lipid biomarker composition in surface sediments from the Carlsberg Ridge near the Tianxiu Hydrothermal Field

Hydrothermal venting has a profound effect on the chemical and biological properties of local and distal seawater and sediments. In this study, lipid biomarkers were analyzed to examine the potential influence of hydrothermal activity on the fate of organic matter(OM) in surface sediments around Tianxiu Hydrothermal Field in the Carlsberg Ridge(CR), Northwest Indian Ocean. By comparing the biomarker distributions of the samples with that of other typical hydrothermal sediments in the mid ocean ridge, it is shown that the location of the samples is not affected by the hydrothermal activity. The relatively low abundances of terrestrial n-alkyl lipids and riverine1,15-C32 diol suggested a minor contribution of terrigenous OM to the study area. The bacteria contributed predominantly to sedimentary marine OM; however, other marine source organisms, e.g., eukaryotes(i.e.,phytoplankton and fungi) could not be completely neglected. The marine-originated biomarkers showed significantly variable distributions between the two sediments, suggesting different dynamic physical and biogeochemical processes controlling the fate of marine OM. This study identified various diagnostic biomarkers(5,5-diethyl alkanes, diols and β-OH FAs), which may have significant environmental implications for future works in this region.     

东太平洋CC区西区表层沉积物黏土矿物和地球化学特征

本文以太平洋CC区西区12个表层沉积物样品作为研究对象,对其粒度、化学组分和矿物成分进行分析,讨论其沉积环境和物质来源。研究区地处深海,主要以深海黏土和硅钙质黏土为主,含有少量的硅质黏土、黏土质硅质软泥和黏土质钙质软泥。黏土矿物成分主要是蒙皂石和伊利石,含有部分的高岭石和绿泥石。黏土矿物组成表明,区内沉积物主要是陆源,由高空气流携带而来,南极底流和热液活动对其物源的来源有一定影响。沉积物地球化学特征也表明,物源以陆源为主,稀土元素分布曲线和北太平洋表层海水稀土曲线类似,且表现出强的Ce亏损,表明生物活动导致的生物沉降对表层沉积物也有一定的影响。     

Bacterial diversity in the sediments collected from the Shikoku Basin

Diversity of bacteria was studied in deep-sea sediments from the Shikoku Basin in the Northwest Pacific Ocean by PCR, RFLP and sequence analysis of 16S rDNA and comparing with Genbank database. Based on the RFLP profile generated, 77 clones from the 16S rDNA library were divided into 27 types. Phylogenetic analysis showed that the 27 independent clones fell into four groups: Proteobacteria (62.96%), Chloroflexi (14.81%), Planctomycetes (14.81%) and Acidobacteria (7.41%). Among all sequenced clones, 6 were related to the sulfur or sulfate metabolism bacteria and the results also demonstrated that some bacteria in deep-sea sediments had relation to matter-energy circulation.     

Distribution of nitrogen-fixing bacteria in the Central Pacific Ocean

The plate culture method using the two formulae for non-nitrogenous media was adopted in this investigation for the purpose of counting and isolating nitrogen-fixing bacteria distributed in the open sea. Sea water samples were collected at eighteen different stations in the region of Lat. 50°N–15°S along Long. 155°W and two other stations in the Pacific Ocean. In order to compare with those samples from the open sea, water samples were also obtained at four stations in Suruga and Sagami Bays. Nitrogen-fixing bacteria appear to be widely but very unevenly distributed at all depths in sea water, in numbers approximately ranging from nil to 10⁴ per 100 ml of sea water, and denser vertical populations have been found in the area of Lat. 40°N and 5°N along Long. 155°W, even at depths from 2,000 to 3,000m. A conparatively denser population of bacteria was found in sea water from Suruga Bay and Sagami Bay. The bacteria associated with plankton were abundantly demonstrated, in numbers ranging from 10⁶ to 10⁸ per 1 ml settling volume of plankton, in many plankton samples collected at four stations in the southern parts of the Pacific Ocean. Almost all the bacteria isolated from the samples of blue green algal colonies,Trichodesmium, sp., were able to grow on nonnitrogeneous media.     

海洋环境中的厌氧氨氧化细菌与厌氧氨氧化作用

厌氧氨氧化是细菌在厌氧条件下将氨氮氧化成氮气的过程,主要应用在污水处理反应器中,最近几年发现在海洋环境中也广泛存在,并在海洋氮循环过程中发挥了重要作用,代表了海洋中一个巨大的氮汇,对碳循环和全球气候变化也有重要影响.梯烷膜脂结构独特,是厌氧氨氧化细菌的化学生物标志物,具有化学分类与古海洋学应用潜力.厌氧氨氧化作用及厌氧...     

海洋环境中的厌氧氨氧化细菌与厌氧氨氧化作用

厌氧氨氧化是细菌在厌氧条件下将氨氮氧化成氮气的过程,主要应用在污水处理反应器中,最近几年发现在海洋环境中也广泛存在,并在海洋氮循环过程中发挥了重要作用,代表了海洋中一个巨大的氮汇,对碳循环和全球气候变化也有重要影响。梯烷膜脂结构独特,是厌氧氨氧化细菌的化学生物标志物,具有化学分类与古海洋学应用潜力。厌氧氨氧化作用及厌氧氨氧化细菌已成为海洋生物地球化学、微生物学、有机地球化学等研究领域的热点。     

Microbial status in seawater and coastal sediments during pre- and post-tsunami periods in the Bay of Bengal, India

Tsunami, the natural disaster, which occurred on December 26, 2004 in the Indian Ocean, caused severe damage to mankind in the coastal areas. Total loss of life and economic loss because of this disaster have been estimated by various agencies but its effect on microbial density has not been probed. With our previous results on microbial populations in four locations of the Chennai coast of the Bay of Bengal, India in the pre‐tsunami period, the change in microbial populations was studied after the tsunami at regular intervals in the same locations. Coastal sediment and seawater samples were collected from four different locations after 5–10 h and thereafter at intervals of every 7 days up to 28 days post‐tsunami. Bacteria, fungi and actinomycetes were isolated from the marine samples by serial dilution on respective media. Before the tsunami, the bacterial population was higher in seawater samples than the sediments, whereas fungi and actinomycetes were recorded only in the sediments. The microbial population remarkably increased 5–10 h post‐tsunami in all the marine samples irrespective of the location. However, it slowly declined in the subsequent days and became similar to that of the population recorded before the tsunami. The population of gram‐positive bacteria increased whereas the gram‐negative bacterial population decreased after the tsunami. Further, populations of pathogenic bacteria such as coliform and vibrios did not increase after the tsunami. It has been observed that the increase in populations of bacteria and actinomycetes even after 28 days of tsunami may be due to the introduction of foreign microorganisms that developed the ability to survive in the extreme environment by exhibiting special characteristics such as pigmentation and production of exopolysaccharides.     

The transport of bacteria in the sediments of a temperate marsh

The number of bacteria in sediments, interstitial water and overlying tidal water of an oligohaline marsh system are about 10⁹, 10⁶ and 10⁶ cells cm^?3, respectively. Average cell size in the overlying water (about 0·06 μm³), is much smaller than that in sediments and interstitial water (about 0·18 μm³). Most bacterial cells in sediments are bound to sediment particles and less than 1% of the cells were displaced by percolating water through sediment columns. Concentration of bacteria in flooding tidal waters is generally higher than that in ebbing waters. Movement of bacterial biomass does not appear to be a significant mechanism of particulate organic transport in marsh sediments and marsh sediments do not appear to be a source of suspended bacteria for estuaries.     

辽河口沉积物反硝化细菌数量及多样性的研究

对辽河口沉积物中反硝化细菌的数量、多样性以及群落结构进行了研究.采用MPN-Griess分析了春夏秋三季的反硝化细菌数量,结果表明其数量春季最多,秋季次之,夏季最低,且从辽河下游及河口向远海区域逐渐降低.采用PCR-RFLP对反硝化细菌的亚硝酸盐还原酶基因(nirS)进行分析,发现沉积物中的反硝化细菌类型较新,大多数细...     

山口红树林根际土壤可培养细菌多样性及其活性筛选

为探讨广西山口红树林土壤可培养细菌的多样性，采用纯培养分离技术对采集的25个红树林样品进行可培养细菌多样性分析，挑选117株菌株进行16S rRNA基因测序并构建系统发育树分析。结果表明117株菌株分别属于9个纲20个目27个科35个属，9个纲包括α-变形菌纲（21.37%）、β-变形菌纲（1.71%）、γ-变形菌纲（12.82%）、δ-变形菌纲（0.85%）、噬纤维菌纲（0.85%）、鞘脂杆菌纲（0.85%）、黄杆菌纲（2.56%）、放线菌纲（27.35%）、芽孢杆菌纲（31.62%）。优势属为芽孢杆菌属，占所有菌株的28.20%，此外α-变形菌纲、γ-变形菌纲、黄杆菌纲和放线菌纲中发现了7株潜在的新物种。分离菌株的产酶活性检测表明，山口红树林根际土壤蕴含丰富的产淀粉酶、蛋白酶、葡聚糖、纤维素酶和几丁质酶等生物活性酶的菌株，其中芽孢杆菌纲的产酶菌株数最为丰富。初步研究结果表明广西山口红树林土壤可培养细菌资源丰富，新物种资源多样，是农业微生物开发应用的重要资源库。     

Phillipsite in deep-sea sediments

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Exopolysaccharides produced by bacteria isolated from the pelagic Southern Ocean — Role in Fe binding,chemical reactivity,and bioavailability

As a result of ubiquitous excretion by micro-organisms, extracellular polymeric substances are reported in high concentrations in marine systems. The majority of this material is exopolysaccharide (EPS). Despite previous studies showing that EPS can affect carbon as well as trace metal cycling, little is known about the effect on Fe – a critical nutrient limiting primary productivity in up to 40% of the ocean. Here, we have characterised an EPS purified from bacteria isolated from the pelagic Southern Ocean (Pseudoalteromonas sp.) and investigated its role in Fe chemical speciation, solubility, as well as bioavailability for two keystone Southern Ocean phytoplankton strains. This EPS has an average molecular weight of 4.6 MDa, exhibiting mainly –OH, COO– and –NH₂ functional groups. An asymmetrical flow field-flow fractionation coupled online with UV-spectrophotometer, differential refractive index, and multiangle laser light scattering (aFlFFF-UV-DRI-MALS) demonstrates that this EPS is polydisperse with three, not well resolved, size populations having molar masses in the range from 0.57 to 15.8 MDa. Fe was exclusively associated with the medium size fraction of this EPS and was the most abundant trace metal with 2.2 nM Fe per nM EPS. Only a third of this Fe was chemically labile, and the strength of Fe-EPS complexes increased with equilibration time. 1 nM EPS is efficient to retain Fe in solution, mainly in the colloidal phase (0.02–0.2 μm). Fe bound to the EPS was highly bioavailable (25% as much as for inorganic Fe). Due to combined effect of EPS on Fe solubility and bioavailability, it can increase the residence time of bioavailable Fe in the euphotic zone, therefore possibly sustaining and controlling primary productivity in sensitive oceanic regions, such as the Southern Ocean.     

Chemical composition of sediments from the subducting Cocos Ridge segment at the Southern Central American subduction zone

Subducted sediments play an important role in the magmatism at subduction zones and the formation of mantle heterogeneity, making them an important tracer for shallow crustal processes and deep mantle processes.Therefore, ascertaining the chemical compositions of different subduction end-members is a prerequisite for using subducted sediments to trace key geological processes. We reports here the comprehensive major and trace element analyses of 52 samples from two holes（U1414 A and U1381 C） dri...     

Microbial Biomass and Organic Nutrients in the Deep-Sea Sediments of the Central Indian Ocean Basin

In order to assess the impact of deep-sea mining on the in situ benthic life, we measured the microbial standing stock and concentration of organic nutrients in the deep-sea sediments of the Central Indian Ocean Basin in the Indian pioneer area. Sediments were collected using box core and grab samples during September 1996. The total bacterial numbers ranged from 10 10 -10 11 cells per g -1 dry weight sediment. There was a marginal decrease in the number of bacteria from surface to 30 cm depth, though the subsurface section registered a higher number than did the surface. The highest numbers were encountered at depths of 4-8 cm. The retrievable number of bacteria were two orders less in comparison with the direct total counts of bacteria. An almost homogeneous distribution of bacteria, total organic carbon, living biomass, and lipids throughout the depth of cores indicates active microbial and benthic processes in the deep sea sediments. On the other hand, a uniform distribution of total counts of bacteria, carbohydrates, and total organic carbon in all the cores indicates their stable nature and suggests that they can serve as useful parameters for long-term monitoring of the area after the benthic disturbance. Further studies on temporal variability in this region would not only verify the observed norms of distribution of these variables but would also help to understand restabilization processes after the simulated benthic disturbance.     

东南太平洋热液区硫化物样品富集培养物中Fe3＋还原细菌的多样性分析

采集了东南太平洋热液区DYl15-20V一$35一TVGl7站位的沉积物硫化物样品,其含有76．717％（m／m）强还原性的磁性良好的黄铁矿．以乳酸钠为电子供体,不溶性的氢氧化铁为电子受体,对该样品进行Fe¨还原细菌的定向富集培养．通过构建该茵群的16SrDNA基因文库,随机挑选82个阳性克隆子进行群落结构多样性分析．研究结果表明：82个克隆代表的6种基因型分别属于4个主要类群,其中ε一变形杆菌占有绝对优势,达到55．2％．此外其还包括厚壁菌门、β一变形杆菌和仅．变形杆菌,克隆子比例依次为27．6％、10．3％、6．9％．在富集产物中还原氢氧化铁的功能菌群主要是具有硫还原作用的ε一变形菌中的硫还原菌．