Dissolved nutrient balance and net ecosystem metabolism in a Mediterranean-climate coastal lagoon: San Diego Bay

The temporal and spatial variability of dissolved inorganic phosphate (DIP), nitrogen (DIN), carbon (DIC) and dissolved organic carbon (DOC) were studied in order to determine the net ecosystem metabolism (NEM) of San Diego Bay (SDB), a Mediterranean-climate lagoon. A series of four sampling campaigns were carried out during the rainy (January 2000) and the dry (August 2000 and May and September 2001) seasons. During the dry season, temperature, salinity and DIP, DIC and DOC concentrations increased from oceanic values in the outer bay to higher values at the innermost end of the bay. DIP, DIC and DOC concentrations showed a clear offset from conservative mixing implying production of these dissolved materials inside the bay. During the rainy season, DIP and DOC increased to the head, whereas salinity decreased toward the mouth due to land runoff and river discharges. The distributions of DIP and DOC also showed a deviation from conservative mixing in this season, implying a net addition of these dissolved materials during estuarine mixing within the bay. Mass balance calculations showed that SDB consistently exported DIP (2.8–9.8 × 10³ mol P d⁻¹), DIC (263–352 × 10³ mol C d⁻¹) and DOC (198–1233 × 10³ mol C d⁻¹), whereas DIN (5.5–18.2 × 10³ mol N d⁻¹) was exported in all samplings except in May 2001 when it was imported (8.6 × 10³ mol N d⁻¹). The DIP, DIC and DOC export rates along with the strong relationship between DIP, DIC or DOC and salinity suggest that intense tidal mixing plays an important role in controlling their distributions and that SDB is a source of nutrients and DOC to the Southern California Bight. Furthermore, NEM ranged from −8.1 ± 1.8 mmol C m⁻² d⁻¹ in September to −13.5 ± 5.8 mmol C m⁻² d⁻¹ in January, highlighting the heterotrophic character of SDB. In order to explain the net heterotrophy of this system, we postulate that phytoplankton-derived particulate organic matter, stimulated by upwelling processes in the adjacent coastal waters, is transported into the bay, retained and then remineralized within the system. Our results were compared with those reported for the heterotrophic hypersaline coastal lagoons located in the semi-arid coast of California–Baja California, and with those autotrophic hypersaline systems found in the semi-arid areas of Australia. We point out that the balance between autotrophy and heterotrophy in inverse estuaries is dependent on net external inputs of either inorganic nutrients or organic matter as it has been indicated for positive estuaries.     

The cycling and oxidation pathways of organic carbon in a shallow estuary along the Texas Gulf Coast

The cycling and oxidation pathways of organic carbon were investigated at a single shallow water estuarine site in Trinity Bay, Texas, the uppermost lobe of Galveston Bay, during November 2000. Radio-isotopes were used to estimate sediment mixing and accumulation rates, and benthic chamber and pore water measurements were used to determine sediment-water exchange fluxes of oxygen, nutrients and metals, and infer carbon oxidation rates. Using ⁷Be and ²³⁴Th_XS, the sediment-mixing coefficient (D_b) was 4.3 ± 1.8 cm² y⁻¹, a value that lies at the lower limit for marine environments, indicating that mixing was not important in these sediments at this time. Sediment accumulation rates (S_a), estimated using ¹³⁷Cs and ²¹⁰Pb_XS, were 0.16 ± 0.02 g cm⁻² y⁻¹. The supply rate of organic carbon to the sediment-water interface was 30 ± 3.9 mmol C m⁻² d⁻¹, of which ∼10% or 2.9 ± 0.44 mmol C m⁻² d⁻¹was lost from the system through burial below the 1-cm thick surface mixed layer. Measured fluxes of O₂ were 26 ± 3.8 mmol m⁻² d⁻¹ and equated to a carbon oxidation rate of 20 ± 3.3 mmol C m⁻² d⁻¹, which is an upper limit due to the potential for oxidation of additional reduced species. Using organic carbon gradients in the surface mixed layer, carbon oxidation was estimated at 2.6 ± 1.1 mmol C m⁻² d⁻¹. Independent estimates made using pore water concentration gradients of ammonium and C:N stoichiometry, equaled 2.8 ± 0.46 mmol C m⁻² d⁻¹. The flux of DOC out of the sediments (DOC_efflux) was 5.6 ± 1.3 mmol C m⁻² d⁻¹. In general, while mass balance was achieved indicating the sediments were at steady state during this time, changes in environmental conditions within the bay and the surrounding area, mean this conclusion might not always hold. These results show that the majority of carbon oxidation occurred at the sediment-water interface, via O₂ reduction. This likely results from the high frequency of sediment resuspension events combined with the shallow sediment mixing zone, leaving anaerobic oxidants responsible for only ∼10–15% of the carbon oxidized in these sediments.     

Dissolved inorganic carbon dynamics in the waters surrounding forested mangroves of the Ca Mau Province (Vietnam)

Dissolved inorganic carbon (DIC) and ancillary data were obtained during the dry and rainy seasons in the waters surrounding two 10-year-old forested mangrove sites (Tam Giang and Kiên Vàng) located in the Ca Mau Province (South-West Vietnam). During both seasons, the spatial variations of partial pressure of CO₂ (pCO₂) were marked, with values ranging from 704 ppm to 11481 ppm during the dry season, and from 1209 ppm to 8136 ppm during the rainy season. During both seasons, DIC, pCO₂, total alkalinity (TAlk) and oxygen saturation levels (%O₂) were correlated with salinity in the mangrove creeks suggesting that a combination of lower water volume and longer residence time (leading to an increase in salinity due to evaporation) enhanced the enrichment in DIC, pCO₂ and TAlk, and an impoverishment in O₂. The low O₂ and high DIC and pCO₂ values suggest that heterotrophic processes in the water column and sediments controlled these variables. The latter processes were meaningful since the high DIC and TAlk values in the creek waters were related to some extent to the influx of pore waters, consistent with previous observations. This was confirmed by the stochiometric relationship between TAlk and DIC that shows that anaerobic processes control these variables, although this approach did not allow identifying unambiguously the dominant diagenetic carbon degradation pathway. During the rainy season, dilution led to significant decreases of salinity, TAlk and DIC in both mangrove creeks and adjacent main channels. In the Kiên Vàng mangrove creeks a distinct increase of pCO₂ and decrease of %O₂ were observed. The increase of TSM suggested enhanced inputs of organic matter probably from land surrounding the mangrove creeks, that could have led to higher benthic and water column heterotrophy. However, the flushing of water enriched in dissolved CO₂ originating from soil respiration and impoverished in O₂ could also have explained to some extent the patterns observed during the rainy season. Seasonal variations of pCO₂ were more pronounced in the Kiên Vàng mangrove creeks than in the Tam Giang mangrove creeks. The air–water CO₂ fluxes were 5 times higher during the rainy season than during the dry season in the Kiên Vàng mangrove creeks. In the Tam Giang mangrove creeks, the air–water CO₂ fluxes were similar during both seasons. The air–water CO₂ fluxes ranged from 27.1 mmol C m⁻² d⁻¹ to 141.5 mmol C m⁻² d⁻¹ during the dry season, and from 81.3 mmol m⁻² d⁻¹ to 154.7 mmol m⁻² d⁻¹ during the rainy season. These values are within the range of values previously reported in other mangrove creeks and confirm that the emission of CO₂ from waters surrounding mangrove forests are meaningful for the carbon budgets of mangrove forests.     

Carbonate system and CO2 degassing fluxes in the inner estuary of Changjiang (Yangtze) River,China

We examined the carbonate system, mainly the partial pressure of CO₂ (pCO₂), dissolved inorganic carbon (DIC) and total alkalinity (TAlk) in the Changjiang (Yangtze) River Estuary based on four field surveys conducted in Sep.–Oct. 2005, Dec. 2005, Jan. 2006 and Apr. 2006. Together with our reported pCO₂ data collected in Aug.–Sep. 2003, this study provides, for the first time, a full seasonal coverage with regards to CO₂ outgassing fluxes in this world major river–estuarine system. Surface pCO₂ ranged 650–1440 μatm in the upper reach of the Changjiang River Estuary, 1000–4600 μatm in the Huangpujiang River, an urbanized and major tributary of the Changjiang downstream which was characterized by a very high respiration rate, and 200–1000 μatm in the estuarine mixing zone. Both DIC and TAlk overall behaved conservatively during the estuarine mixing, and the seasonal coverage of these carbonate parameters allowed us to estimate the annual DIC export flux from the Changjiang River as ∼ 1.54 × 10¹² mol. The highly polluted Huangpujiang River appeared to have a significant impact on DIC, TAlk and pCO₂ in the lower reaches of the inner estuary. CO₂ emission flux from the main stream of the Changjiang Estuary was at a low level of 15.5–34.2 mol m^− 2 yr^− 1. Including the Huangpujiang River and the adjacent Shanghai inland waters, CO₂ degassing flux from the Changjiang Estuary may have represented only 2.0%–4.6% of the DIC exported from the Changjiang River into the East China Sea.     

Productivity cycles in the coastal upwelling area off Concepción: The importance of diatoms and bacterioplankton in the organic carbon flux

Recurrent coastal upwelling is recognized as one of the main factors promoting the exceptionally high productivity of the Humboldt Current System. Herein, we study time series data of gross primary production (2003-2006) and its fluctuation in relation to seasonal changes in the light and nutrient field of the Concepción upwelling ecosystem. Concurrent measurements of gross primary production, community respiration, bacterial secondary production, and sedimentation rates allowed a characterization of the main carbon fluxes and pathways in the study area. The integrated values of gross primary production were higher during the upwelling period (>1 g C m⁻² d⁻¹; October-April; that is, early spring to early austral fall). Seasonal changes in the system were also reflected in community respiration, organic matter sedimentation, and bacterial production rates, which varied along with the gross primary production. The significant correlation between gross primary production and community respiration (Spearman, r = 0.7; p < 0.05; n = 18) reflected an important degree of coupling between organic matter formation and its usage by the microplanktonic community during periods when gross primary production/community respiration were highly similar. Higher gross primary production values (>6 g C m⁻² d⁻¹) were consistently associated with maximum biomass levels of Skeletonema costatum and Thalassiosira subtilis. We observed a positive correlation between gross primary production and the sedimentation of intact diatom cells (Spearman, r = 0.5, p < 0.05, n = 17). Our data suggest that, in the Concepción upwelling ecosystem, bacteria utilize an important fraction of the gross primary production. If our interpretations are correct, they leave unanswered the question of how the system supports the extremely high fish biomass levels, therein pointing out the system’s limited capacity to buffer the evasion of CO₂ following upwelling.     

Particulate organic carbon fluxes to the ocean interior and factors controlling the biological pump: A synthesis of global sediment trap programs since 1983

Particulate organic carbon (POC) is vertically transported to the oceanic interior by aggregates and their ballasts, mainly CaCO₃ and biogenic opal, with a smaller role for lithogenic aerosols through the mesopelagic zone. Diel migrating zooplankton communities effect vertical transport and remineralization of POC in the upper layers of the ocean. Below 1.5 km, the presence of zooplankton is reduced and thus the aggregates travel mainly by gravitational transport. We normalized the fluxes of POC, CaCO₃, and biogenic opal from data published on samples collected at 134 globally distributed, bottom-tethered, time-series sediment trap (TS-trap) stations to annual mole fluxes at the mesopelagic/bathypelagic boundary (m/b) at 2 km and defined them as F_m/bC_org, F_m/bC_inorg, and F_m/bSi_bio. Using this global data set, we investigated (1) the geographic contrasts of POC export at m/b and (2) the supply rate of ∑CO₂ to the world mesopelagic water column. F_m/bC_org varies from 25 (Pacific Warm Pool) to 605 (divergent Arabian Sea) mmolC m⁻² yr⁻¹; F_m/bC_inorg varies from >8 (high latitude Polar Oceans) or 15 (Pacific Warm Pool) to 459 (divergent Arabian Sea) mmolC m⁻² yr⁻¹; and F_m/bSi_bio, the most spatially/temporally variable flux, ranges from 6 (North Atlantic Drift) to 1118 (Pacific Subarctic Gyre) mmolSi m⁻² yr⁻¹. The oceanic region exhibiting the highest POC flux over a significantly large region is the area of the North Pacific Boreal Gyres where the average F_m/bC_org = 213, F_m/bC_inorg = 126, and F_m/bSi_bio = 578 mmol m⁻² yr⁻¹. F_m/bC_org and F_m/bC_inorg are particularly high in large upwelling margins, including the divergent Arabian Sea and off Cape Verde. One of the data sets showing the lowest flux over a significant region/basin is F_m/bC_org = 39, F_m/bC_inorg = 69, and F_m/bSi_bio = 22 mmol m⁻² yr⁻¹ in the North Pacific subtropical/tropical gyres; Pan-Atlantic average fluxes are similar except F_m/bSi_bio fluxes are even lower. Where C_org/C_inorg and Si_bio/C_inorg are <1 defines the “Carbonate Ocean”, and where these ratios are ?1 defines the “Silica Ocean”. The Carbonate Ocean occupies about 80% of the present world pelagic ocean between the two major oceanographic fronts, the North Pacific Polar Front and the Antarctic Polar Front, and the Silica Ocean is found on the polar sides of these fronts. The total global annual fluxes of F_m/bC_org, F_m/bC_inorg, and F_m/bSi_bio at m/b calculated by parameterizations of the export flux data from 134 stations are surprisingly similar; 36.2, 33.8, and 34.6 teramol yr⁻¹ (120, 112, and 114 mmol m⁻² yr⁻¹), respectively, resulting in a near uniform binary ratio between the above three elements of about one. The global ternary % ratios estimated from 152 TS-trap samples of the three elements are 35:32:33. From our global F_m/bC_org and a published model estimate of the global export production, we estimate the regeneration rate of CO₂ through the mesopelagic zone by the biological pump is 441 teramolC yr⁻¹. Based on our global F_m/bC_inorg and recently estimated global primary production of PIC, 36-86 teramolC yr⁻¹ of PIC is assumed to be dissolved within the upper 2 km of the water column.     

Influence of allochthonous input on autotrophic–heterotrophic switch-over in shallow waters of a tropical estuary (Cochin Estuary), India

Bacterial productivity (BP) and respiration (BR) were examined in relation to primary productivity (PP) for the first time in a shallow tropical ecosystem (Cochin Estuary), India. The degree of dependence of BP (6.3–199.7 μg C L⁻¹ d⁻¹) and BR (6.6–430.4 μg C L⁻¹ d⁻¹) on PP (2.1–608.0 μg C L⁻¹ d⁻¹) was found to be extremely weak. The BP/PP (0.05–8.5) and PP/BR (0.02–7.9) ratios widely varied in the estuary depending on the season and location. There was a seasonal shift in net pelagic production from autotrophy to heterotrophy due to terrestrial organic matter input through rivers which enhanced the bacterial heterotrophic activity and very high pCO₂ (106–6001 μatm) levels. The heterotrophic zones were characterized by low PP but high bacterial production and respiration leading to oxygen undersaturation and exceptionally high pCO₂. We propose that the CO₂ supersaturation caused by increased bacterial respiration (in excess of PP) was a result of bacterial degradation of allochthonous organic matter. This indicates that sources other than planktonic compartment need to be explored to understand the C-cycling in this estuary. These results are of particular relevance to tropical ecosystems in general, where the bulk of world's river discharges occur.     

Carbon isotopic fractionation in macroalgae from Cádiz Bay (Southern Spain): Comparison with other bio-geographic regions

The ¹³C signature of forty-five macroalgal species from intertidal zones at Cádiz Bay was analysed in order to research the extension of diffusive vs. non-diffusive utilisation of dissolved inorganic carbon (DIC) and to perform a comparison with data published for other bio-geographic regions. The ∂¹³C values ranged from −6.8‰ to −33‰, although the span of variation was different depending on the taxa. Thus, ∂¹³C for Chlorophyta varied from −7‰ (Codium adhaerens) to −29.6‰ (Flabellia petiolata), while all the Phaeophyceae (excepting Padina pavonica with ∂¹³C higher than −10‰) had values between −10‰, and −20‰. The widest variation range was recorded in Rhodophyta, from values above −10‰ (Liagora viscida) to values lower than −30‰ obtained in three species belonging to the subclass Rhodymeniophycidae. Accordingly, the mean ∂¹³C value calculated for red algae (−20.2‰) was significantly lower than that for brown (−15.9‰) and green algae (−15.6‰). Most of the analysed red algae were species inhabiting crevices and the low intertidal fringe which explains that, on average, the shaded-habitat species had a ∂¹³C value lower than those growing fully exposed to sun (i.e. in rockpools or at the upper intertidal zone). The comparison between the capacity for non-diffusive use of DIC (i.e. active or facilitated transport of HCO₃⁻ and/or CO₂) and the ∂¹³C values reveals that values more negative than −30‰ indicate that photosynthesis is dependent on CO₂ diffusive entry, whereas values above this threshold would not indicate necessary the operation of a non-diffusive DIC transport mechanism. Furthermore, external carbonic anhydrase activity (_extCA) and ∂¹³C values were negatively correlated indicating that the higher the dependence of the photosynthesis on the CO₂ supplied from HCO₃⁻ via _extCA, the lower the ∂¹³C in the algal material. The comparison between the ∂¹³C values obtained for the analysed species and those published for species inhabiting other bio-geographic areas (warm-temperate, cold and polar) suggests that globally (at least for the red and brown algae) the non-diffusive entry of DIC is more widely spread among the species from Cádiz Bay than among those of polar regions. If it is assumed that non-diffusive use of DIC implies saturation of photosynthesis at the present-day CO₂ concentration in seawater, our data indicate that the potential impact of the acidification on photosynthesis in the seaweed communities will be different depending on the latitude.     

Short-term variability of fCO2 in seawater and air–sea CO2 fluxes in a coastal upwelling system (Ría de Vigo, NW Spain)

Coastal upwelling systems are regions with highly variable physical processes and very high rates of primary production and very little is known about the effect of these factors on the short-term variations of CO₂ fugacity in seawater (fCO₂^w). This paper presents the effect of short-term variability (<1 week) of upwelling–downwelling events on CO₂ fugacity in seawater (fCO₂^w), oxygen, temperature and salinity fields in the Ría de Vigo (a coastal upwelling ecosystem). The magnitude of fCO₂^w values is physically and biologically modulated and ranges from 285 μatm in July to 615 μatm in October. There is a sharp gradient in fCO₂^w between the inner and the outer zone of the Ría during almost all the sampling dates, with a landward increase in fCO₂^w.CO₂ fluxes calculated from local wind speed and air–sea fCO₂ differences indicate that the inner zone is a sink for atmospheric CO₂ in December only (−0.30 mmol m⁻² day⁻¹). The middle zone absorbs CO₂ in December and July (−0.05 and −0.27 mmol·m⁻² day⁻¹, respectively). The oceanic zone only emits CO₂ in October (0.36 mmol·m⁻² day⁻¹) and absorbs at the highest rate in December (−1.53 mmol·m⁻² day⁻¹).     

Current status and ecological roles of Zostera marina after recovery from large-scale reclamation in the Nakdong River estuary,Korea

Large Zostera marina meadows (covering 13.6 km²) existed in the Nakdong River estuary on the south coast of Korea until the mid-1980s, but these Z. marina beds nearly disappeared due to reclamation of adjacent mud flats for the construction of a port and industrial complex during the late 1980s. Partial recovery of Z. marina meadows occurred recently, and Z. marina coverage of about 0.3 km² was observed in this estuary. In this study, shoot morphology, density, biomass, productivity, and tissue nutrient content were measured to evaluate the current status of the Z. marina meadows by comparing these data to those for persistent seagrass meadows in similar geographical areas. Additionally, we examined the ecological roles of Z. marina in this estuary after recovery from the large-scale disturbance. Shoot density (151 shoots m⁻²) and total biomass (141 g DW m⁻²) in the estuary were similar to those reported from other Z. marina meadows in Korea. Annual leaf production (1726 g DW m⁻² y⁻¹) was higher than generally observed for Z. marina in other geographical areas. These results imply that the existing Z. marina meadows in this estuary have adjusted to local environmental conditions that changed after large-scale reclamation. Estimated annual whole plant carbon (C) and nitrogen (N) incorporations based on shoot production and tissue C and N content were 810.0 g C m⁻² y⁻¹ and 59.7 g N m⁻² y⁻¹, respectively. These values were equivalent to 2.4 × 10⁵ kg C y⁻¹ and 1.8 × 10⁴ kg N y⁻¹ for all Z. marina beds in the Nakdong River estuary. This high C and N incorporation into Z. marina tissues suggests that existing Z. marina meadows play important roles in C and N cycles in this estuary. Although the currently existing Z. marina beds in this estuary are persisting and play an important ecological role, anthropogenic factors that cause seagrass declines still affect the estuary. Thus, effective management and monitoring of Z. marina beds and environmental factors are critical to protecting and conserving this invaluable component of the Nakdong River estuary.     

In vitro simulation of oxic/suboxic diagenesis in an estuarine fluid mud subjected to redox oscillations

Estuarine turbidity maxima (ETMs) are sites of intense mineralisation of land-derived particulate organic matter (OM), which occurs under oxic/suboxic oscillating conditions owing to repetitive sedimentation and resuspension cycles at tidal and neap-spring time scales. To investigate the biogeochemical processes involved in OM mineralisation in ETMs, an experimental set up was developed to simulate in vitro oxic/anoxic oscillations in turbid waters and to follow the short timescale changes in oxygen, carbon, nitrogen, and manganese concentration and speciation. We present here the results of a 27-day experiment (three oxic periods and two anoxic periods) with an estuarine fluid mud from the Gironde estuary. Time courses of chemical species throughout the experiment evidenced the occurrence of four distinct characteristic periods with very different properties. Steady oxic conditions were characterised by oxygen consumption rates between 10 and 40 μmol L⁻¹ h⁻¹, dissolved inorganic carbon (DIC) production of 9–12 μmol L⁻¹ h⁻¹, very low NH₄⁺ and Mn²⁺ concentrations, and constant NO₃⁻ production rates (0.4 - 0.7 μmol L⁻¹ h⁻¹) due to coupled ammonification and nitrification. The beginning of anoxic periods (24 h following oxic to anoxic switches) showed DIC production rates of 2.5–8.6 μmol L⁻¹ h⁻¹ and very fast NO₃⁻ consumption (5.6–6.3 μmol L⁻¹ h⁻¹) and NH₄⁺ production (1.4–1.5 μmol L⁻¹ h⁻¹). The latter rates were positively correlated to NO₃⁻ concentration and were apparently caused by the predominance of denitrification and dissimilatory nitrate reduction to ammonia. Steady anoxic periods were characterised by constant and low NO₃⁻ concentrations and DIC and NH₄⁺ productions of less than 1.3 and 0.1 μmol L⁻¹ h⁻¹, respectively. Mn²⁺ and CH₄ were produced at constant rates (respectively 0.3 and 0.015 μmol L⁻¹ h⁻¹) throughout the whole anoxic periods and in the presence of nitrate. Finally, reoxidation periods (24–36 h following anoxic to oxic switches) showed rapid NH₄⁺ and Mn²⁺ decreases to zero (1.6 and 0.8–2 μmol L⁻¹ h⁻¹, respectively) and very fast NO₃⁻ production (3 μmol L⁻¹ h⁻¹). This NO₃⁻ production, together with marked transient peaks of dissolved organic carbon a few hours after anoxic to oxic switches, suggested that particulate OM mineralisation was enhanced during these transient reoxidation periods. An analysis based on C and N mass balance suggested that redox oscillation on short time scales (day to week) enhanced OM mineralisation relative to both steady oxic and steady anoxic conditions, making ETMs efficient biogeochemical reactors for the mineralisation of refractory terrestrial OM at the land-sea interface.     

Benthic fluxes in a tropical Estuary and their role in the ecosystem

In-situ measurements of benthic fluxes of oxygen and nutrients were made in the subtidal region of the Mandovi estuary during premonsoon and monsoon seasons to understand the role of sediment–water exchange processes in the estuarine ecosystem. The Mandovi estuary is a shallow, highly dynamic, macrotidal estuary which experiences marine condition in the premonsoon season and nearly fresh water condition in the monsoon season. The benthic flux of nutrients exhibited strong seasonality, being higher in the premonsoon compared to the monsoon season which explains the higher ecosystem productivity in the dry season in spite of negligible riverine nutrient input. NH₄⁺ was the major form of released N comprising 70–100% of DIN flux. The benthic respiration rate varied from −98.91 to −35.13 mmol m⁻² d⁻¹, NH₄⁺ flux from 5.15 to 0.836 mmol m⁻² d⁻¹, NO₃⁻ + NO₂⁻ from 0.06 to −1.06 mmol m⁻² d⁻¹, DIP from 0.12 to 0.23 mmol m⁻² d⁻¹ and SiO₄⁴⁻ from 5.78 to 0.41 mmol m⁻² d⁻¹ between premonsoon to monsoon period. The estuarine sediment acted as a net source of DIN in the premonsoon season, but changed to a net sink in the monsoon season. Variation in salinity seemed to control NH₄⁺ flux considerably. Macrofaunal activities, especially bioturbation, enhanced the fluxes 2–25 times. The estuarine sediment was observed to be a huge reservoir of NH₄⁺, PO₄³⁻ and SiO₄⁴⁻ and acted as a net sink of combined N because of the high rate of benthic denitrification as it could remove 22% of riverine DIN influx thereby protecting the eco system from eutrophication and consequent degradation. The estuarine sediment was responsible for ∼30–50% of the total community respiration in the estuary. The benthic supply of DIN, PO₄³⁻ and SiO₄⁴⁻ can potentially meet 49%, 25% and 55% of algal N, P and Si demand, respectively, in the estuary. Based on these observations we hypothesize that it is mainly benthic NH₄⁺ efflux that sustains high estuarine productivity in the NO₃⁻ depleted dry season.     

High-resolution observations of aggregate flux during a sub-polar North Atlantic spring bloom

An aggregate flux event was observed by ship and by four underwater gliders during the 2008 sub-polar North Atlantic spring bloom experiment (NAB08). At the height of the diatom bloom, aggregates were observed as spikes in measurements of both particulate backscattering coefficient (b_bp) and chlorophyll a fluorescence. Optical sensors on the ship and gliders were cross-calibrated through a series of simultaneous profiles, and b_bp was converted to particulate organic carbon. The aggregates sank as a discrete pulse, with an average sinking rate of ∼75 m d⁻¹; 65% of aggregate backscattering and 90% of chlorophyll fluorescence content was lost between 100 m and 900 m. Mean aggregate organic carbon flux at 100 m in mid-May was estimated at 514 mg C m⁻² d⁻¹, consistent with independent flux estimates. The use of optical spikes observed from gliders provides unprecedented coupled vertical and temporal resolution measurements of an aggregate flux event.     

Carbon sources supporting a diverse fish community in a tropical coastal ecosystem (Gazi Bay,Kenya)

Interlinked mangrove–seagrass ecosystems are characteristic features of many tropical coastal areas, where they act as feeding and nursery grounds for a variety of fishes and invertebrates. The autotrophic carbon sources supporting fisheries in Gazi bay (Kenya) were studied in three sites, two located in the tidal creeks flowing through extensive mangrove forests, another site located in the subtidal seagrass meadows, approximately 2.5 km away from the forest. Carbon and nitrogen stable isotope composition of 42 fish species, 2 crustacean species and a range of potential primary food sources (e.g., mangroves, seagrasses and epiphytes, macroalgae) were analysed. There was considerable overlap in the δ¹³C signatures between fish (−16.1 ± 2.1‰), seagrasses (−15.1 ± 3.0‰), seagrass epiphytes (−13.6 ± 3.3‰), and macroalgae (−20.4 ± 3.1‰). Nevertheless, the signatures for most primary producers were sufficiently distinct to indicate that the dominant carbon sources for fish were mainly derived from the seagrass and their associated epiphytic community, and possibly macroalgae. Mangrove-derived organic matter contributes only marginally to the overall fish food web. Carbon supporting these fish communities was derived directly through grazing by herbivorous and some omnivorous fishes, or indirectly through the benthic food web. Fishes from the mangrove creeks had distinctly lower δ¹³C signatures (−16.8 ± 2.0‰) compared to those collected in the adjacent seagrass beds (−14.7 ± 1.7‰). This indicated that these habitats were used as distinct sheltering and feeding zones for the fishes collected, with minimal degree of exchange within the fish communities despite their regular movement pattern.     

Particulate suspended matter concentrations in the Bahía Blanca Estuary,Argentina: Implication for the development of phytoplankton blooms

The inner zone of the Bahía Blanca Estuary is shallow, nutrient-rich and turbid. Tidal energy and water turbulence strongly affect the water column resulting in a well-mixed structure and high concentrations of suspended sediment. The phytoplankton community is mostly dominated by diatoms and the annual pattern has been characterized by a recurrent winter-early spring bloom. Here, we investigated to what extent the temporal variations of suspended particulate matter (SPM) regulate the phytoplankton blooms in the head of the estuary by light-limitation. Sampling was done on a fortnightly basis (weekly during the blooming season) at a fixed station in the inner zone of the estuary from January 2007 to February 2008. SPM concentrations and light extinction coefficients (k) in the water column were significantly correlated and showed relatively lower values during the phytoplankton maximal biomass levels. During winter, SPM and k reached values of 23.6 mg l⁻¹ and 0.17 m⁻¹ which were significantly lower than the annual means of 77.6 mg l⁻¹ and 2.94 m⁻¹, respectively. The particulate organic matter (POM) concentration was significantly correlated with the calculated phytoplankton biomass although the contribution of the latter to the total POM was rather low. Both, POM and biomass, had maximal values during winter (21.8 mg l⁻¹ and 393.5 μg C l⁻¹) and mid summer (24.3 mg l⁻¹ and 407.0 μg C l⁻¹), with cell densities up to 8 × 10⁶ cells l⁻¹ and chlorophyll a up to 24.6 μg l⁻¹. Our results suggest that the decrease of SPM concentrations in the water column with a concomitant increase in the penetration of solar radiation seems to be one of the main causes for the development of the phytoplankton winter bloom in the Bahía Blanca Estuary.     

The fate of production in the central Arctic Ocean - top-down regulation by zooplankton expatriates?

We estimated primary and bacterial production, mineral nutrients, suspended chlorophyll a (Chl), particulate organic carbon (POC) and nitrogen (PON), abundance of planktonic organisms, mesozooplankton fecal pellet production, and the vertical flux of organic particles of the central Arctic Ocean (Amundsen basin, 89-88° N) during a 3 week quasi-Lagrangian ice drift experiment at the peak of the productive season (August 2001). A visual estimate of ≈15% ice-free surface, plus numerous melt ponds on ice sheets, supported a planktonic particulate primary production of 50-150 mg C m⁻² d⁻¹ (mean 93 mg C m⁻² d⁻¹, n = 7), mostly confined to the upper 10 m of the nutrient replete water column. The surface mixed layer was separated from the rest of the water column by a strong halocline at 20 m depth. Phototrophic biomass was low, generally 0.03-0.3 mg Chl m⁻³ in the upper 20 m and <0.02 mg Chl m⁻³ below, dominated by various flagellates, dinoflagellates and diatoms. Bacterial abundance (typically 3.7-5.3 × 10⁵, mean 4.1 × 10⁵ cells ml⁻¹ in the upper 20 m and 1.3-3.7 × 10⁵, mean 1.9 × 10⁵ cells ml⁻¹ below) and Chl concentrations were closely correlated (r = 0.75). Mineral nutrients (3 μmol NO₃ l⁻¹, 0.45 μmol PO₄ l⁻¹, 4-5 μmol SiO₄ l⁻¹) were probably not limiting the primary production in the upper layer. Suspended POC concentration was ∼30-105 (mean 53) mg C m⁻³ and PON ∼5.4-14.9 (mean 8.2) mg N m⁻³ with no clear vertical trend. The vertical flux of POC in the upper 30-100 m water column was ∼37-92 (mean 55) mg C m⁻² d⁻¹ without clear decrease with depth, and was quite similar at the six investigated stations. The mesozooplankton biomass (≈2 g DW m⁻², mostly in the upper 50 m water column) was dominated by adult females of the large calanoid copepods Calanus hyperboreus and Calanus glacialis (≈1.6 g DW m⁻²). The grazing of these copepods (estimated via fecal pellet production rates) was ≈15 mg C m⁻² d⁻¹, being on the order of 3% and 20% of the expected food-saturated ingestion rates of C. hyperboreus and C. glacialis, respectively. The stage structure of these copepods, dominated by adult females, and their unsatisfied grazing capacity during peak productive period suggest allochthonous origin of these species from productive shelf areas, supported by their long life span and the prevailing surface currents in the Arctic Ocean. We propose that the grazing capacity of the expatriated mesozooplankton population would match the potential seasonal increase of primary production in the future decreased ice perspective, diminishing the likelihood of algal blooms.     

Sedimentary iron inputs stimulate seagrass (Posidonia oceanica) population growth in carbonate sediments

The relationship between sedimentary Fe inputs and net seagrass population growth across a range of Posidonia oceanica meadows growing in carbonate Mediterranean sediments (Balearic Islands, Spain; SE Iberian Peninsula, Spain; Limassol, Cyprus; Sounion, Greece) was examined using comparative analysis. Sedimentary Fe inputs were measured using benthic sediment traps and the net population growth of P. oceanica meadows was assessed using direct census of tagged plants. The meadows examined ranged from meadows undergoing a severe decline to expanding meadows (specific net population growth, from −0.14 yr⁻¹ to 0.05 yr⁻¹). Similarly, Fe inputs to the meadows ranged almost an order of magnitude across meadows (8.6–69.1 mg Fe m⁻² d⁻¹). There was a significant, positive relationship between sedimentary iron inputs and seagrass net population growth, accounting for 36% of the variability in population growth across meadows. The relationship obtained suggested that seagrass meadows receiving Fe inputs below 43 mg Fe m⁻² d⁻¹ are vulnerable and in risk of decline, confirming the pivotal role of Fe in the control of growth and the stability of seagrass meadows in carbonate sediments.     

Dynamics and sources of suspended particulate organic matter in the Marennes-Oléron oyster farming bay: Insights from stable isotopes and microalgae ecology

The aim of this study was to distinguish between sources of the complex variety of Marennes-Oléron Bay suspended particulate organic matter (SPOM) contributing to the tropho-dynamics of the Marennes-Oléron oyster farming bay. Basic biomarkers (Chl a, C/N and POC/Chl a ratios), carbon and nitrogen stable isotopes from SPOM were analyzed and the microalgae community was characterized. The sampling strategy was bimonthly from March 2002 to December 2003; samples were taken from an intertidal mudflat. Four main sources contributed to the SPOM pool: terrigenous input from rivers, neritic phytoplankton, resuspended microphytobenthos and periodic inputs from intertidal Zostera noltii meadows. Seasonal fluctuations were observed in both years of the study period: (1) SPOM collected in the spring of 2002 (δ¹³C = −25‰ to −23‰) was mainly composed of fresh estuarine inputs; (2) SPOM from the summer and fall of 2002 and 2003 was predominantly neritic phytoplankton (δ¹³C = − 22‰ to −19‰); (3) SPOM from the winter of 2002, spring of 2003 and winter of 2003 (δ¹³C = −21 to −23‰) was composed of a mixture of decayed terrigenous river inputs and pelagic phytoplankton, which was predominantly resuspended microphytobenthos. In the summer of 2003—the warmest summer on record in southern France and Europe—SPOM was particularly enriched for ¹³C, with δ¹³C values ranging from −14‰ to −12‰. Pulses in δ¹³C values, indicative of ¹³C-enriched decaying materials, extended into the fall. These were attributed to benthic intertidal inputs, including both resuspended microphytobenthos and Z. noltii detritus. Changes in SPOM sources in Marennes-Oléron Bay may lead to differences in the quality of the trophic environment available for reared oysters.     

Influence of ENSO variability on sinking-particle fluxes in the northeastern equatorial Pacific

A time-series sediment trap was operated from July 2003 to July 2008 at a station located in the 10°N thermocline ridge of the northeastern equatorial Pacific (10°30′N, 131°20′W), with the aim of understanding variations in natural background sinking-particle flux and the influence on such fluxes of ENSO (El Niño-Southern Oscillation). Each one of weak El Niño, moderate El Niño and moderate La Niña were observed during the monitoring period. During non-ENSO periods, total mass fluxes varied from 4.1 to 36.9 mg m⁻² d⁻¹, with a distinct seasonal variation, ranging from an average flux of 14.0 mg m⁻² d⁻¹ in the warm season (June-November) to 25.3 mg m⁻² d⁻¹ in the cold season (December-May). This seasonal fluctuation was characterized by a distinct difference in CaCO₃ flux between the two seasons. The enhanced particle fluxes during the cold season are attributed to the supply of nutrient-enriched subsurface water by wind-driven vertical mixing, supported by a simultaneous reduction in sea surface temperature and enhanced trade winds. The weak El Niño event occurred in the monitoring period had no recognizable effect on particle fluxes in the study area, but the moderate El Niño event was accompanied by a significant reduction in particle fluxes to 60% of the average background value in the warm season. In contrast, particle fluxes during the moderate La Niña increased to a maximum value of 129.9 mg m⁻² d⁻¹, almost three times the average background value. Organic carbon and biogenic silica fluxes were most sensitive to the El Niño and La Niña conditions. The observed variations of particle fluxes are synchronized with those of chlorophyll-a, suggesting primary productivity for the main cause of flux change. The present data indicate that marked seasonal variability in background fluxes commonly exceeds the variability associated with ENSO and post-ENSO signals, which should be taken into account when evaluating the influence of ENSO on sinking particle fluxes in the 10°N thermocline ridge area.     

Impact of the Eastern Mediterranean Transient on the distribution of anthropogenic CO2 and first estimate of acidification for the Mediterranean Sea

In the Mediterranean Sea the carbon chemistry is poorly known. However, the impact of the regional and large-scale anthropogenic pressures on this fragile environment rapidly modifies the distribution of the carbonate system key properties like C_T (total dissolved inorganic carbon), A_T (total alkalinity), C_ANT (anthropogenic CO₂), and pH. This leads inexorably to the acidification of its waters. In order to improve our knowledge, we first develop interpolation procedures to estimate C_T and A_T from oxygen, salinity, and temperature data using all available data from the EU/MEDAR/MEDATLAS II database. The acceptable levels of precision obtained for these estimates (6.11 ??mol-kg⁻¹ for C_T and 6.08 ??mol kg⁻¹ for A_T) allow us to draw the distribution of C_ANT (with an uncertainty of 6.75 ??mol kg⁻¹) using the Tracer combining Oxygen, inorganic Carbon, and total Alkalinity (TrOCA) approach. The results indicate that: 1) all Mediterranean water bodies are contaminated by anthropogenic carbon; 2) the lowest concentration of C_ANT is 37.5 ??mol kg⁻¹; and 3) the western basin is more contaminated than the Eastern basin. After reconstructing the distribution of key properties (C_T, A_T, C_ANT) for four periods of time (between 1986 and 2001) along a west-east section throughout the whole Mediterranean Sea, we analyze the impact of the Eastern Mediterranean Transient (EMT). Not only has the concentration of C_ANT increased (especially in the intermediate and the bottom layers of the eastern basin, during and after the EMT), but also the distribution of all properties has been considerably perturbed. This is discussed in detail. For the first time, the level of acidification is estimated for the Mediterranean Sea. Our results indicate that for the year 2001 all waters (even the deepest) have been acidified by values ranging from −0.14 to −0.05 pH unit since the beginning of the industrial era, which is clearly higher than elsewhere in the open ocean. Given that the pH of seawater may affect a very large number of chemical and biological processes, our results stress the necessity to develop new programs of research to understand and then predict the evolution of the carbonate system properties in the Mediterranean Sea.