PCR‐based techniques to determine diet of the Australian sea lion (Neophoca cinerea): a comparison with morphological analysis

Comprehensive dietary information for the endangered Australian sea lion (Neophoca cinerea) is currently limited by the deficiency and poor quality of identifiable prey remains recovered from regurgitate and faeces and the difficulty of observing feeding in the wild. In this study, we investigated DNA‐based prey detection methods using conventional (end‐point) and quantitative real‐time PCR (qPCR) on faeces collected from two captive Australian sea lions fed experimental diets of whole teleost fish, squid and shark tissue. PCR prey detection methods using the mitochondrial cytochrome oxidase subunit I (COI) and 16S genes combined with clone sequencing were compared with prey identified using traditional hard part analysis. The molecular results indicated that prey DNA was degraded. However, prey amplification was successful by targeting short (71 bp) DNA fragments. Both conventional PCR and qPCR techniques significantly increased prey detection compared with analysis of hard parts. For both sea lions, the hard part analysis was constrained by sporadic and extremely low recovery of fish otoliths (<2%), and cephalopod beaks were not recovered from the 116 squid fed. Comparisons between PCR techniques indicated comparable prey detection frequencies for all species tested; however, the sensitivity and greater resolution of qPCR improved prey detection by ~25% in one sea lion fed the experimental squid and perch. The detection of squid DNA ≤ 6 day post‐ingestion by qPCR further exhibits the ability and potential of this method to detect low concentrations of infrequent or pulse prey. This study highlights the use of DNA‐based analysis to detect prey taxa in the absence of identifiable hard prey remains.     

Planktonic cephalopods collected off East Antarctica during the ‘BROKE’ survey

The composition and distribution of squid captured between January and March during the 1996 baseline research on oceanography, krill and the environment survey off East Antarctica (80–150°E) was investigated. A total of 195 individuals were captured. The species collected were Galiteuthis glacialis, Mesonychoteuthis hamiltoni, Histioteuthis atlantica, H. eltaninae, Alluroteuthis antarcticus, Batoteuthis skolops and Pholidoteuthis boschmai. Concentrations of squid were low, ranging from 4.4 to 174.7 individuals 100,000⁻³. The majority of squid captured were G. glacialis (174 individuals, 89.2% of all squid captured), and most of these (n=171) were small paralarvae <25 mm in mantle length. G. glacialis were distributed predominantly west of 120°E in water that was colder, and where the distance from the coastline of the southern boundary of the Antarctic circumpolar current (SB-ACC) was maximal. This water mass had greater concentrations of phytoplankton, was more productive and had maximal sea-ice extent compared to the water mass east of 120°E. G. glacialis was therefore more abundant in water where the majority of krill and krill predators were present compared to warmer oceanic waters of the ACC to the east, where salps dominated.     

Feeding ecology of the banded wrasse Notolabrus fucicola (Labridae) in southern New Zealand: Prey items,seasonal differences,and ontogenetic variation

Notolabrus fucicola Richardson, a large common labrid inhabiting shallow waters around New Zealand and southern Australia, were collected monthly (December 1996‐February 1998) around Kaikoura on the east coast of the South Island, New Zealand. Their diet, temporal variation in prey and gut fullness, and ontogenetic differences were examined. N. fucicola is a generalist predator, the major prey items being bivalves, amphipods, and crabs, which varied temporally in their diet. There were size specific changes in their diet. Small fish (100–180 mm) ate mostly amphipods and isopods, whereas larger fish (> 180 mm) ate mainly bivalves, crabs, and gastropods. There was a temporal variation in gut fullness but no significant difference between sexes.     

Feeding Habits of the Mesopelagic Fish Gonostoma gracile in the Northwestern North Pacific

The diet of Gonostoma gracile, a numerically abundant mesopelagic fish in the Subtropical Region and the Transition Domain of the northwestern North Pacific, was examined using 520 specimens collected during June–July 1988, June 1995 and November 1995. The prey included mainly copepods, ostracods, amphipods and euphausiids. Copepods and ostracods were the most abundant, comprising approximately 70% of the total diet. There was little evidence of an ontogenetic dietary shift; Pleuromamma copepods were the most abundant prey for all size classes of fish ranging from 19 to 116 mm in standard length. The size range of prey increased with growth, but all fish sizes examined fed mainly on 1–4 mm long prey. Luminescent copepods and ostracods were the most abundant prey, suggesting that G. gracile detects its prey visually. This revised version was published online in August 2006 with corrections to the Cover Date.     

Evaluation of food competition and resource partitioning of recruiting fish with permanent residents in a seagrass habitat

ABSTRACT

Recruiting King George whiting Sillaginodes punctatus were studied to assess the potential for food competition with permanent resident fish species in a nursery habitat. Marine migrant post larval S. punctatus (<60?mm TL) consumed primarily harpacticoid copepods and had high (>0.6) diet overlap with permanent resident fish species Favonigobius leteralis and Stigmatopora nigra. Food electivity index indicated that S. punctatus juveniles preferred harpacticoid copepods and amphipods, while juvenile Heteroclinus adelaide and Gymnapistes marmoratus migrating to the nursery habitat targeted larger prey such as amphipods. Preference for larger prey by H. adelaide and G. marmoratus species coupled with differences in prey composition in the stomach was due to mouth size and feeding habits, resulting in different food preferences to S. punctatus. The whiting showed an ontogenetic shift in diet with early settlers (>60?mm TL) consuming less copepods and more amphipods, while previous year recruits (>120?mm TL) consumed polychaete worms. This study indicates that competition for food resources between the new recruiting S. punctatus juveniles and permanent resident juveniles is reduced through differences in temporal and spatial feeding behaviours, mouth morphology, and ontogenetic shift in prey consumption.     

Foraging ecology and movement patterns of jumbo squid (Dosidicus gigas) in the California Current System

From 2002 to 2010, the jumbo squid (Dosidicus gigas) has been regularly encountered in large numbers throughout the California Current System (CCS). This species, usually found in subtropical waters, could affect coastal pelagic ecosystems and fisheries as both predator and prey. Neither the abundance of jumbo squid nor the optimal ocean conditions in which they flourish are well known. To understand better the potential impacts of this species on both commercial fisheries and on food-web structure we collected nearly 900 specimens from waters of the CCS, covering over 20° of latitude, over a range of depths and seasons. We used demographic information (size, sex, and maturity state) and analyzed stomach contents using morphological and molecular methods to best understand the foraging ecology of this species in different habitats of the CCS. Squid were found to consume a broad array of prey. Prey in offshore waters generally reflected the forage base reported in previous studies (mainly mesopelagic fishes and squids), whereas in more coastal waters (shelf, shelf break and slope habitats) squid foraged on a much broader mix that included substantial numbers of coastal pelagic fishes (Pacific herring and northern anchovy, as well as osmerids and salmonids in northern waters) and groundfish (Pacific hake, several species of rockfish and flatfish). We propose a seasonal movement pattern, based on size and maturity distributions along with qualitative patterns of presence or absence, and discuss the relevance of both the movement and distribution of jumbo squid over space and time. We find that jumbo squid are a generalist predator, which feeds primarily on small, pelagic or mesopelagic micronekton but also on larger fishes when they are available. We also conclude that interactions with and potential impacts on ecosystems likely vary over space and time, in response to both seasonal movement patterns and highly variable year-to-year abundance of the squid themselves.     

Reproductive system and the spermatophoric reaction of the mesopelagic squid Octopoteuthis sicula (Rüppell 1844) (Cephalopoda: Octopoteuthidae) from southern African waters

Reproductive features of the poorly known oceanic squid Octopoteuthis sicula are described and quantified to gain insight into the reproductive biology of the species. The data are based on 39 complete and partial specimens from southern African waters, collected between 1975 and 2005. The specimens ranged in mantle length from 38 mm to 290 mm and included juveniles and mature females and males. The species shows female-biased sexual size dimorphism. Ovulation is asynchronous, indicating a repeated spawning strategy. Males transfer spermatophores presumably by using their long terminal organ. Spermatangia (discharged spermatophores) were found implanted in several parts of the body in both females and males, including in the anterior dorsal and ventral rugose, semi-gelatinous mantle tissue of maturing and mature females. This modified mantle tissue was only well developed in females. The morphologies of the spermatophore and the spermatangium of O. sicula are described. The spermatophoric reaction is reconstructed, using various stages of discharge, to provide insight into the process of intradermal implantation of spermatangia of this species.     

Two new species of the marine genus Limnodriloides and a record of Tubificoides fraseri Brinkhurst (Oligochaeta: Tubificidae) from New Zealand

We characterised seasonal and ontogenetic changes in diet and prey energy density of rainbow trout (Oncorhynchus mykiss) in Lake Rotoiti, New Zealand, to better understand the prey requirements of trout in central North Island lakes. Common smelt (Retropinna retropinna) was the dominant prey item of rainbow trout larger than 200 mm (77.8% of diet by weight), followed by kōura (freshwater crayfish Paranephrops planifrons; 6.3%), common bully (Gobiomorphus cotidianus; 5.5%), and kōaro (Galaxias brevipinnis; 3.4%). Juvenile rainbow trout (<200 mm) consumed amphipods, aquatic and terrestrial insects, oligochaetes, tanaid shrimps, and smelt. Trout consumed kōaro only in autumn and winter; consumption of other species did not vary seasonally. The maximum size of smelt consumed increased with increasing trout size, but trout continued to consume small smelt even as large adults. Consumption of larger prey items (kōaro and kōura) also increased with increasing trout size. This study indicates the importance of smelt for sustaining rainbow trout populations, as predation on other species was relatively low. These findings provide a basis for bioenergetic modelling of rainbow trout populations in lakes of the central North Island of New Zealand.     

The feeding habits of slope dwelling macrourid fishes in the eastern North Pacific

The diet of slope dwelling macrourid fishes in the eastern North Pacific is poorly known. We collected several hundred stomach samples to investigate the feeding habits of Coryphaenoides acrolepis and Albatrossia pectoralis, the two dominant slope dwelling macrourids off the continental United States. Coryphaenoides acrolepis exhibited a pronounced ontogenetic shift in diet. Specimens <15 cm pre-anal fin length (PAF) consumed primarily polychaetes, amphipods, cumaceans and mysids, while larger individuals consumed increasingly larger, more pelagic prey such as fish, squid, and large crustaceans. Scavenging was also very important to specimens >15 cm with scavenged food constituting approximately 20% of the weight of total prey and occurring in approximately 20% of fish 21–29 cm. Albatrossia pectoralis consumed primarily midwater fish and squid, and we believe that it feeds in the water column. There were significant differences between the diets of A. pectoralis and C. acrolepis suggesting some degree of niche separation between macrourid species on the continental slope of the eastern North Pacific. Both species are at the top of the food web on the upper continental slope and, because of their abundance, may exert significant pressures on their prey populations.     

Food and feeding habits of juvenile flounder Platichthys flesus (L.), abd turbot Scophthalmus maximus L. in the åland archipelago, northern Baltic Sea

The food choice of juvenile flounder (Platichthys flesus) and turbot (Scophthalmus maximus) was studied in the northern Baltic Sea during the years 1988, 1989, 1994 and 1995. The diet included organisms from 30 species/taxa in flounder (n = 306) and 10 species/taxa in turbot (n = 41). Flounder 45 mm mainly consumed meiofauna (dominating taxon: Harpacticoida, Copepoda) and larger fish (46–101 mm) consumed macrofauna (dominating taxa: Oligochaeta, Amphipoda and Chironomidae). In terms of biomass, macrofauna dominated for all sizes of flounders, and meiofauna was important only for the smallest fish. A strong seasonal variation could be detected in the diet. In spring, macrofauna dominated for all size classes of fish (only fish > 30 mm were caught in spring), while in summer and autumn meiofauna dominated the diets for fish 45 mm in size. Juvenile turbot (22–88 mm) consumed macrofauna and small fish. Turbot 30 mm consumed mainly amphipods, while > 30 mm turbot consumed mysid shrimps, amphipods and fish.The ontogenetic shift from meio- to macrofauna-sized prey in flounders occurs at a larger fish size in the northern Baltic Sea than reported in other areas, possibly depending on the increased relative importance of meiofauna in the northern Baltic. The seasonal variation in the diet could be due to seasonally changing abundances in the zoobenthos, or for the small fish (1-group, spring), to switching from meio- to macrofauna in order to optimize their energy gain. The 0-group flounders consumed meiofauna for a long period, possibly due to a learning-process or simply due to easy availability of meiofauna. Turbot has a much larger mouth gap than flounders, thus allowing them to consume macrofauna from the beginning of their benthic life.     

Diet of the South African fur seal (1974–1985) and an assessment of competition with fisheries in southern Africa

Almost 1 000 South African fur seals Arctocephalus pusillus pusillus were collected at sea (inshore and offshore) for examination of stomach contents and other biological parameters. The main prey of seals above the age of one year was teleost fish, of which at least 28 species were identified. Overall, 74,6 per cent of the diet was teleost fish, 16,7 per cent cephalopods, 4,8 per cent crustaceans such as shrimps, prawns, amphipods and isopods and 3,2 percent rock lobster. Within this overall dietary pattern there were marked regional differences. The importance of individual fish species in the diet was investigated from the numbers and the sizes of otoliths occurring in the stomachs, from which the identity and size classes of the prey species could be calculated. Again there were regional differences in the importance of different prey species. On the west coast of South Africa the most important species were anchovy and Cape hakes (each 23% of total diet), whereas on the south coast the important species were anchovy (17%), horse mackerel (14%), pilchard (12%) and Cape hake (14%). Off South West Africa the two dominant species were pelagic goby (52%) and horse mackerel (23%), anchovy and Cape hake constituting only 4 and 5 per cent respectively of total diet. The total annual consumption of anchovy and Cape hake by seals in South African waters was calculated at 125 000 and 120 000 tons respectively.     

东太平洋赤道海域茎柔鱼(Dosidicus gigas)的体型月间变化及环境效应

为了掌握茎柔鱼体型生长变化及其与栖息环境因子的效应关系, 2017年2—4月和6—8月,在东太平洋赤道海域逐月随机采集了3 628尾茎柔鱼样本,进行体质量、胴长的月间变化分析和胴长与海表温、叶绿素a浓度的效应关系研究。结果显示,雌性个体胴长分布范围为163—468mm,体质量分布范围为123—3034g;雄性个体胴长分布范围为171—475mm,体质量分布范围为145—2 681 g。不同月份之间,雌性、雄性个体的胴长和体质量均存在显著性差异,雌雄性个体胴长、体质量均以2月份的最大, 6—8月份的较小。然而,每个月份雌性、雄性个体的胴长分布均为单峰值区间分布。体质量-胴长幂函数关系显示,2—4月份雌雄性个体多倾向于匀速生长、体征较差,6—8月份个体则以负异速生长为主、体征较为良好。雌性、雄性个体胴长与采样海域海表温、采样纬度呈显著的正效应关系,采样海域叶绿素a浓度对雌性胴长产生正效应影响。研究表明,东太平洋赤道海域茎柔鱼体型的月间差异性显著,体型变化与采样海域海表温、采样纬度关系密切,并且雌性体型与海域叶绿素a浓度呈正效应关系。     

Top-down and bottom-up factors affecting seabird population trends in the California current system (1985–2006)

To characterize the environmental factors affecting seabird population trends in the central portion of the California current system (CCS), we analyzed standardized vessel-based surveys collected during the late spring (May–June) upwelling season over 22 yr (1985–2006). We tested the working hypothesis that population trends are related to species-specific foraging ecology, and predicted that temporal variation in population size should be most extreme in diving species with higher energy expenditure during foraging. We related variation in individual species abundance (number km^?2) to seasonally lagged (late winter, early spring, late spring) and concurrent ocean conditions, and to long-term trends (using a proxy variable: year) during a multi-decadal period of major fluctuations in the El Niño-Southern oscillation (ENSO) and the Pacific decadal oscillation (PDO). We considered both remote (Multivariate ENSO Index, PDO) and local (coastal upwelling indices and sea-surface temperature) environmental variables as proxies for ocean productivity and prey availability. We also related seabird trends to those of potentially major trophic competitors, humpback (Megaptera novaeangliae) and blue (Balaenoptera musculus) whales, which increased in number 4–5-fold midway during our study. Cyclical oscillations in seabird abundance were apparent in the black-footed albatross (Phoebastria nigripes), and decreasing trends were documented for ashy storm-petrel (Oceanodroma homochroa), pigeon guillemot (Cepphus columbus), rhinoceros auklet (Cerorhinca monocerata), Cassin’s auklet (Ptychoramphus aleuticus), and western gull (Larus occidentalis); the sooty shearwater (Puffinus griseus), exhibited a marked decline before signs of recovery at the end of the study period. The abundance of nine other focal species varied with ocean conditions, but without decadal or long-term trends. Six of these species have the largest global populations in the CCS, and four are highly energetic, diving foragers. Furthermore, three of the diving species trends were negatively correlated with the abundance of humpback whales in the study area, a direct competitor for the same prey. Therefore, on the basis of literature reviewed, we hypothesize that the seabirds were affected by the decreasing carrying capacity of the CCS, over-exploitation of some prey stocks and interference competition from the previously exploited, but now increasing, baleen whale populations. Overall, our study highlights the complexity of the ecological factors driving seabird population trends in the highly variable and rapidly changing CCS ecosystem.     

The food and feeding of seven fish species from the Campbell Plateau,New Zealand

The food and feeding habits of hoki (Macruronus novaezelandiae), southern blue whiting (Micromesistius australis), javelin fish (Lepi‐dorhynchus denticulatus), ling (Genypterus blacodes), smooth rattail (Coelorinchus aspercephalus), silverside (Argentina elongata), and small‐scaled notothenid (Notothenia microlepidota) sampled from the Campbell Plateau in 1979 were examined. The importance of prey items in the diet has been assessed by an ‘index of relative importance’, which combines measurements of frequency of occurrence, number, and weight of prey. Hoki, southern blue whiting, and javelin fish are pelagic feeders. Hoki preyed largely on natant decapod crustaceans, amphipods, and myctophid and photichthyid fishes. The main prey of southern blue whiting were amphipods, natant decapods, and euphausiids. Javelin fish fed on natant decapods, amphipods, and small squid. Seasonal and regional differences in feeding, and dietary changes with length of fish were evident. Ling, smooth rattail, silverside, and small‐scaled notothenid are predominantly benthic feeders. Ling preyed on natant decapods, macrourid fishes, and small hoki. The diet of rattail comprised natant decapod crustaceans, opal fishes (Hemerocoetes spp.), and poly‐chaetes. Silverside fed almost solely on salps. Salps, amphipods, brachyuran crustaceans, and opal fishes were the main prey of small‐scaled notothenid.     

Spatial, temporal and ontogenetic variation in diet of anchovy (Engraulis encrasicolus) on the Algerian coast (SW Mediterranean)

The diet of anchovy Engraulis encrasicolus was studied in three regions (Béjaia, Bénisaf and Ghazaouet) along the Algerian coast. Ontogenetic, spatial and seasonal variations in anchovy diet were investigated using multivariate analyses and analysed in relation with sea surface temperature and chlorophyll-a. 46 prey taxa of varying size between 0.57 mm (Euterpina acutifrons) and 6.8 mm (fish larvae) were recorded. Whatever the season, the region or the fish size, anchovy is exclusively zooplanktivorous and copepods were the most present prey, constituting 87% by number of the prey taken and found in 98% of the anchovy stomachs examined. However, their occurrence and number varied according to the different areas, seasons and fish size. During its first year of life, anchovy feeds almost exclusively on copepods (mainly small and medium size prey). As anchovy grows, copepods are gradually substituted by large crustaceans such as decapods and amphipods. Hierarchical cluster analysis, analysis of similarities (ANOSIM) and similarities percentage (SIMPER) indicated a distinct diet of anchovy of the bay of Bejaia from those of the bays of Bénisaf and Ghazaouet probably due to differences in hydrologic conditions. Diet differences also occurred between seasons. Summer and spring have distinct prey assemblages each and showed low diet similarities with the two other seasons. More prey species were found in the diet during winter (36) and autumn (30) and the vacuity index was lower in winter. Temporal variability in satellite-derived chlorophyll-a matched the seasonal variability in the diversity of the anchovy prey and feeding intensity as reflected by the vacuity index, suggesting further investigation of the potential use of satellite-derived chlorophyll-a data as a proxy for anchovy feeding intensity.     

Reproductive pattern of the epifaunal amphipodPontogeneia rostrata (Crustacea) on dolsando sandy shore in Korea

Reproductive patterns of an epifaunal amphipod,Pontogeneia rostrata, were studied on Dolsando sandy shore in Korea. The life history pattern was iteroparous, with recruitment mainly occurring from winter to spring. The sex ratio was male-biased, especially during breeding periods. The mean body length of females was significantly larger than that of males. Brood size and egg volume were positively related to the body length of ovigerous females. There was no significant difference in brood size between successive breeding periods, but egg volumes were significantly higher in early winter (December) than in late spring breeding (May and June), increasing the probability of survival to hatching. These traits contribute to more reproductive potential in early winter than in late spring breeding. The mean brood size of epifaunalP. rostrata was larger but the mean egg volume smaller than that of infaunal amphipods in this sampling area. We suggest that reproductive effort for epifaunal species may be proportionally greater than for infaunal species in risky environments.     

Recent population trends of sooty and light-mantled albatrosses breeding on Marion Island

Sub-Antarctic Marion Island is one of the few islands where both species of Phoebetria albatrosses breed sympatrically. The last published assessment of their population trends, which reported counts up to 2008, concluded that the numbers of breeding pairs of sooty albatross P. fusca (Endangered) were decreasing, whereas numbers of light-mantled albatross P. palpebrata (Near Threatened) were increasing. Extending the counts to 2014 reversed these trends, with numbers of sooty albatrosses increasing from 2006 to 2014, and numbers of light-mantled albatrosses decreasing from 2007 to 2014. Confidence in island-wide counts is low due to the cryptic nature of the albatrosses on their largely inaccessible cliff-side nest sites, as well as counts for sooty albatrosses taking place late in the incubation period when 10?20% of nests have already failed. Given the greater conservation concern for the sooty albatross, we recommend that dedicated annual counts be conducted during the early incubation period, and be repeated shortly after the chicks hatch (late December), mid-way through the nestling period (late February) and prior to fledging (late April), to give a better idea of breeding success. Count zones also should be revised to facilitate more accurate counts, ensuring more reliable estimates of sooty albatross population trends at Marion Island.     

Stomach contents of cetaceans incidentally caught along Mangalore and Chennai coasts of India

The stomachs of 32 individuals of seven cetacean species incidentally caught in gill net and purseseine fisheries along Mangalore and Chennai coasts (India) between 2004 and 2006 were examined. The whole stomach (fore-gut, mid-gut and hind-gut) was examined in all cases. Prey remains (666 prey items comprising six species of teleosts, one crustacean and one squid species) were found in the stomachs of eight individuals (the remaining 24 stomachs were found to be empty). All cetaceans were found to feed mostly on teleosts with wide range of trophic levels. Based on an index that included frequency of occurrence, percentage by number and by weight, the oil sardine Sardinella longiceps was the main prey in the sample. Cetaceans appear to favour both pelagic as well as demersal prey, possibly indicating surface and benthic feeding habits.     

Population biology of Ischyrocerus commensalis,a crab‐associated amphipod,in the Southern Barents Sea: a multi‐annual summer study

Population biology of the amphipod Ischyrocerus commensalis Chevreux, 1900, a facultative commensal of the red king crab Paralithodes camtschaticus (Tilesius, 1815), is here described on samples collected during summers 2005–2009 in Dalnezelenetskaya Bay (Southern Barents Sea, Russia). The studied features included infestation indices, size composition, morphometric, and reproductive parameters of the summer generation. During the studied period, prevalence and mean number of I. commensalis per host were 34.4% and 54.4 ± 3.3 individuals, respectively. The majority of amphipods were found on the host mouth parts, limbs, and gills. The amphipod sex‐ratio was significantly biased towards females (F:M = 1.36:1). The size frequency distributions observed in July and August were similar but in July the proportion of the smallest amphipods (<2.1 mm body length) was two times higher than that in August. All the amphipods with body length >5.1 mm were males or females. Length–weight relationships in female and male amphipods differed significantly, suggesting that females were heavier than the same‐sized males. The females carrying eggs in their brood pouches were the most abundant groups (54.8% in July 2009 and 51.6% in August 2005–2008). The minimal body length of a female which had released juveniles was 7.0 mm in July and 6.2 mm in August. The size at 50% maturity of I. commensalis females was estimated to be 6.58 mm. The number of eggs laid is positively linearly correlated with the size of a female. The proportion of the females with eggs in the latest developmental stage in July was 10 times higher than in August. The differences of biological features in symbiotic amphipods between the July and August may be explained by more intensive reproduction effort in the earlier month.     

Fine‐scale diet of the Australian sea lion (Neophoca cinerea) using DNA‐based analysis of faeces

We applied DNA‐based faecal analysis to determine the diet of female Australian sea lions (n = 12) from two breeding colonies in South Australia. DNA dietary components of fish and cephalopods were amplified using the polymerase chain reaction and mitochondrial DNA primers targeting the short (~100 base pair) section of the 16S gene region. Prey diversity was determined by sequencing ~50 amplicons generated from clone libraries developed for each individual. Faecal DNA was also combined and cloned from multiple individuals at each colony and fish diversity determined. Diets varied between individuals and sites. Overall, DNA analysis identified a broad diversity of prey comprising 23 fish and five cephalopod taxa, including many species not previously described as prey of the Australian sea lion. Labridae (wrasse), Monacanthidae (leatherjackets) and Mullidae (goat fish) were important fish prey taxa. Commonly identified cephalopods were Octopodidae (octopus), Loliginidae (calamary squid) and Sepiidae (cuttlefish). Comparisons of fish prey diversity determined by pooling faecal DNA from several samples provided a reasonable but incomplete resemblance (55–71%) to the total fish diversity identified across individual diets at each site. Interpretation of diet based on the recovery of prey hard‐parts identified one cephalopod beak (Octopus sp.) and one fish otolith (Parapriacanthus elongatus). The present study highlights the value of DNA‐based analyses and their capabilities to enhance information of trophic interactions.