Impact of a combined sewer overflow on the abundance,distribution and community structure of subtidal benthos

A biological survey of the subtidal fauna near an intertidal combined sewer overflow (CSO) discharging into Puget Sound, Washington, USA, was conducted during April and May, 1977. The purpose of this study was to determine the effect of the CSO on the surrounding marine invertebrate communities.The shallowest subtidal sites studied (9 m below MLLW) appeared to be more affected by the CSO than deeper sites (13 and 24 m below MLLW). The subtidal area affected, as reflected in the levels of organic material, heavy metals and pesticides in the sediments, as well as the composition of the benthic macrofauna, appeared to be highly localised. The numerically dominant species at sites closest to the CSO was the polychaete Capitella capitata while the abundance of the bivalve Axinopsida serricata increased with distance from the CSO.Burrowing deposit feeders were the numerically dominant polychaete feeding type at sites nearest the CSO. Surface deposit feeders were more abundant at sites farther from the CSO, perhaps due to reduced sedimentation rates.Site-classification analyses indicated that sites adjacent to the CSO were more similar to one another than to sites which were farther away and apparently less affected.The positions of the sites along the first three principal component ordination axes were significantly correlated with depth and volatile organics (traceable to the CSO) in the sediments.     

夏季庙岛群岛大型底栖动物群落特征

根据2022年8月大潮期间庙岛群岛岛屿的潮间带和潮下带大型底栖动物的调查结果,对其种类组成、数量分布、优势种、多样性以及群落结构特点进行了研究。结果表明:本次潮间带定量调查共鉴定大型底栖动物52种,其中甲壳动物最多(17种);定性调查共鉴定42种,软体动物最多(30种)。潮下带定量调查共鉴定大型底栖动物39种,低于潮间带定量调查,其中软体动物最多(26种)。潮间带大型底栖动物平均丰度为234个/m²,平均生物量为82.82g/m²。潮下带平均丰度为180.2个/m²,平均生物量为708.02g/m²。潮间带大型底栖动物多样性指数(H′)、丰富度指数(D)和均匀度指数(J′)平均值分别为1.187、1.723和0.540;潮下带H′、D和J′平均值均高于潮间带,分别为1.301、2.204和0.669。在本次潮间带定量调查中,大型底栖动物优势种为施氏玻璃钩虾(Hyaleschmidti)、平背蜞(Gaeticedepressus)、潮间海钩虾(Pontogeneialittorea)等。潮下带优势种与...     

Diversity and temporal variation of peracarid fauna (Crustacea: Peracarida) in the shallow subtidal of a sandy beach: Playa América (Galicia, NW Spain)

Peracarids (Crustacea: Peracarida) are an important component of soft-sediment faunas and are considered good indicators of quality of water and sediments. Nevertheless, little is known about diversity of peracarid crustaceans on the shallow subtidal sediments of Playa América, a sandy beach in the Ensenada de Baiona (Galicia, NW Spain). Therefore, the peracarid fauna of its shallow subtidal zone was studied in a fine-sand site at 4-m depth from February 1996 to February 1997. Monthly sampling yielded a total of 4753 individuals belonging to 60 species. Amphipods were dominant in number of individuals and species followed by cumaceans. The assemblage showed a stable composition in species through the year and was numerically dominated by a few species, namely the amphipods Siphonoecetes kroyeranus and Microprotopus maculatus and the cumacean Pseudocuma longicorne . These species showed large monthly fluctuations in abundance, with maximal values between summer and autumn.     

Heterotrophic flagellates in the littoral and sublittoral zones of the southeast part of the Pechora Sea

For the first time, data on the heterotrophic flagellate fauna in the littoral and the sublittoral zones of the southeastern part of the Pechora Sea were obtained. Sixty-six heterotrophic flagellate species were found in the study region: 48 and 42 species were found on the shelf and in the intertidal zone, respectively. The most common species were Cafeteria roenbergensis, Paraphysomonas sp., Ancyromonas sigmoides, Cafeteria minuta, Actinomonas mirabilis, and Spumella sp. The littoral fauna of the heterotrophic flagellates was more peculiar than the sublittoral fauna and equally rich. In the region studied, the community can be divided into two types: (a) the predominantly littoral community characterized by a special composition of the dominant species and by high similarity between its local varieties and (b) the heterogeneous predominantly sublittoral community characterized by a lack of a complex of particular species. The local diversity of the heterotrophic flagellate community was low (on the average, 4.5 species per one sample 1 cm³ in volume). The overall distribution pattern of the flagellates was extremely heterogeneous. The large amount of species that were encountered only once causes a great variability in the species structure from one station to another. The total number of the species monotonously increased with the growth in the number of samples and no manifested saturation of the cumulative curve was reached. This indicates the potentially greater diversity of the heterotrophic flagellate species in the region studied.     

Spatial organisation of macrozoobenthic communities in response to environmental factors in a coastal lagoon of the NW African coast (Merja Zerga,Morocco)

Merja Zerga lagoon, located on the Moroccan Atlantic coast, is a site of international value (Ramsar Site) in terms of its ornithological diversity. However, the lagoon is heavily exploited for its clams and fishes. In an effort to further understanding of lagoon ecosystems, and thus to facilitate the management and conservation of their resources, an ecological survey of its benthic component was carried out. Benthos is a valuable food source for birds, fishes and humans. This work involved identifying the macrozoobenthic communities in the lagoon and assessing their spatial distribution. The study was based on monthly sampling of the intertidal zone and seasonal sampling in subtidal zone, over a one-year period. In the intertidal zone, salinity and median diameter and silt content of the sediment exhibited a gradient extending from the entrance to the inner lagoon, according to tidal flow. Sediment grain size characteristics reflected a gradual decrease of tidal currents from the lagoon entrance towards the inner parts of the lagoon, i.e. silt content increased with distance from the entrance. In the subtidal zone, the tidal currents were fairly strong throughout the lagoon, leading to the presence of coarser sediments than in the intertidal zone. Based on these physical, chemical and substratum characteristics, three communities were identified: (i) Cerastoderma edule and (ii) Scrobicularia plana communities were located in both the intertidal and subtidal zones; and (iii) a Tapes decussata community that was only found in the subtidal zone. The assemblages in the subtidal zone were more diverse and the mean abundances of the constituent species were higher than in the intertidal zone, which is an interesting feature for a lagoon environment. Communities were distributed along an ecological gradient, without showing a discontinuity or ecotone. The lagoon functioned like an estuary in which the community structure was controlled by edaphic factors in the intertidal zone, and by the hydrological factors in the subtidal zone.     

Macrobenthic communities of the Vellar Estuary in the Bay of Bengal in Tamil-Nadu in South India

The macrobenthic fauna and communities of the Vellar Estuary located at the southeast cost of India (11°30′ N, 79°45′ E) and the adjacent marine and river habitats are described on the basis of original data (70 samples over 10 transects). The fauna consists of 115 macrobenthic species and 79 species in estuarine habitats. We described 14 types of macrobenthic communities with different compositions of the dominant species. The leading ecological factors of the distribution of the communities are the salinity, depth, and bottom type. The Vellar estuary consists of two longitudinal zones of macrobenthos. The polyhalinic area is populated by the marine species, but it is related not to a salinity decrease but to the protection from waves and silt on the bottom in this area. The polyhalinic communities are most abundant in terms of the biomass and species richness. The mesohalinic area is inhabited by brackish water species and communities with low abundance. The sublittoral estuarine area is dominated by filter-feeders—the bivalves Crassostrea madrasensis, Meretrix casta, Modiolus metcalfei, and Scapharca inaequivalves—and the littoral zone is dominated by the gastropods Cerithidea cingulata, some crabs, and polychaetes. The ecosystem function of the Vellar estuary can be defined as a filter for the fine organic particles transported by the river.     

Polychaete Communities Related to Plant Covering in the Médiolittoral and Infralittoral Zones of the Balearic Islands (Western Méditerranean)

Abstract. The polychaete fauna of the subtidal in the médiolittoral and the infralittoral hard bottom zones of the Balearic Islands at depths from 0 to 40m contained 220 species. Five different polychaete communities could be identified by changes in abundance, species richness, species composition, diversity, and trophic structure. In the very clear waters of these islands the infralittoral zone extends to a depth of 40 m and allows us to investigate whether former proposed models of polychaete distribution can be extended to this particular situation.     

Sponge epibionts on ecosystem-engineering ascidians: The case of Microcosmus sabatieri

The study of epibionts on habitat engineering ascidians is of increasing interest because changes in the population structure of the latter may affect associated communities, especially in the case of commercially exploited species. The solitary ascidian Microcosmus sabatieri lives on rocky cliffs in the Eastern Mediterranean and is harvested in certain Aegean areas. Its hard, wrinkled tunic is usually fouled by various epibionts both sessile and motile. Sponges are an important component of this complex and their biomass may be higher than that of the ascidian itself, strongly affecting diversity and abundance of the motile epifauna. The aim of this study was to examine in detail the structure of the epibiotic sponge assemblage on ascidians collected from their main fishing grounds in the South Aegean Sea. A rich (41 species) and taxonomically diverse sponge assemblage was found, while only eight species contributed 80% of the total sponge cover. Most of the epibiotic sponges commonly grow on the surrounding sublittoral cliffs. The encrusting sponge growth form prevailed in cover of the ascidian tunic, while two massive species dominated in terms of frequency of appearance and abundance. Ascidian dimensions, weight and volume were significantly correlated with sponge diversity, abundance and cover area, thus structuring the epibiotic sponge assemblage. Spatial patterns in sponge cover were not clear, but a general declining NW to SE trend in sponge richness, abundance and cover appeared in accordance with previous records. Sponge distribution on the ascidian tunic presented a clear pattern related with characteristic features of the ascidian: the posterior zone supported the richest and most expansive sponge fauna. The ecosystem-engineering process performed by the ascidian is enhanced by the diverse epibiotic sponge assemblage, thus further increasing habitat complexity in this space-limited, temperate, sublittoral, rocky environment.     

山东长岛潮间带大型底栖动物生态特征研究

2015年11月(秋季)、2016年2月(冬季)、2016年6月(春季)、2016年9月(夏季)大潮期间对山东长岛列岛中南长山岛和北长山岛的3个不同底质类型的潮间带采样点进行了系统的大型底栖动物调查,研究了其数量特征和季节变化,包括群落种类组成、密度和生物量、优势种、物种多样性等,结果表明:本次调查共鉴定出大型底栖动物隶属7个门,共81种。其中环节动物门多毛类动物25种,软体动物门25种,节肢动物门22种,棘皮动物门6种,其他类群共3种(包括纽虫、腔肠动物和鱼类各1种)。潮间带大型底栖动物平均密度为118.97 ind./m~2,软体动物和甲壳动物占据了研究区域底栖群落的密度主要成分,两者分别占比为39.58%和36.68%。各采样点平均密度为北长山岛(BCS)(141.17 ind./m~2)避险角(NCS1)(122.33ind./m~2)明珠广场东(NCS2)(93.42ind./m~2);各采样点平均生物量为128.03g/m~2,软体动物和甲壳动物占据了研究区域底栖群落的生物量主要成分,两者分别占比为58.56%和35.32%。平均生物量北长山岛(BCS)(234.95g/m~2)避险角(NCS1)(99.99g/m~2)明珠广场东(NCS2)(49.13g/m~2)。从季节来看,各站点的物种数、平均密度和生物量季节变化的规律性不明显,总体为秋、春季较多,夏、冬季较少。3个站点物种多样性指数(H′)、丰富度指数(D)和均匀度指数(J′)平均值分别为2.30、1.99和0.79,各潮区中,均为中潮带低潮带高潮带,各季节变化不明显。优势种受底质类型和季节变化的影响明显,没有在各站点和季节均为优势种的种类,主要的优势种有平背蜞(Gaetice depressus)、绒螯近方蟹(Hemigrapsus penicillatus)、短滨螺(Littorina brevicula)等。与以往历史资料相比,长岛潮间带生物出现了一定变化,种类和数量减少,与烟台近岸潮间带大型底栖动物种类组成差别很大。     

Meiobenthic diversity in space and time: The case of harpacticoid copepods in two Mediterranean microtidal sandy beaches

Meiobenthic data from two microtidal sandy beaches of the eastern Mediterranean (Crete, Greece) were used to investigate patterns of both alpha and beta diversity in space and time. Copepod assemblages and environmental variables related to sediment characteristics, morphodynamics and food were studied over a year at four distinct habitats at each beach; the retention, resurgence and saturation zones of Salvat's intertidal scheme (midlittoral zone), and the surf zone of the sublittoral. Αlpha diversity analysis indicated similar species richness at both beaches when the whole 13-month data set was considered but was higher at the sheltered site when each sampling period was examined separately. Both beaches supported higher diversity in the sublittoral zone. Species richness increased seawards at the midlittoral zone of the sheltered site whereas, no pattern was evident at the exposed site, where the intense hydrodynamic conditions homogenized the sediments. Beta diversity increased markedly towards the sublittoral, indicating greater differences in alpha diversity between the sublittoral and the midlittoral zone. Species turnover was more variable at the exposed beach and at the most landward stations, where environmental conditions change often between extremes. A proportion of the variation in alpha diversity was explained by food availability at both beaches and additionally by grain size at the sheltered site. However, no environmental variable explained beta diversity patterns. Although the results of our study support the hypothesis of Multicausal Environmental Severity proposed for sandy beach macrofauna, we believe the classic Intermediate Disturbance Hypothesis is a more appropriate framework for the meiofauna communities of the studied sites.     

黄渤海底栖纤毛虫分子多样性和生物地理学研究

对中国渤海、北黄海和南黄海三个海域底栖纤毛虫的分子多样性与生物地理学进行了研究。从底栖真核微生物18S rDNA的焦磷酸测序数据中提取出隶属于纤毛门的序列，并在此基础上分析了纤毛虫群落的阿尔法多样性和贝塔多样性。结果表明，纤毛虫操作分类单元的丰富度在渤海比北黄海和南黄海都高，但夏冬两季无显著差异。在所有检测的环境因子中，水体深度与阿尔法多样性的相关性最强。就纤毛虫群落组成上看，总体上旋唇纲的序列及操作分类单元丰富度均占优势地位（占比分别为77.0%和66.5%）；旋唇纲主要由环毛亚纲以及未能进一步分类的类群组成。底栖纤毛虫群落结构在三个海域之间显著不同，但夏冬两季无显著差异。从各主要类群的相对比例来看，唯有侧口纲的序列比例在三个区域间呈现显著的不同。偏门特尔分析表明，相对于地理距离和环境因子而言，水体深度在调控底栖纤毛虫群落结构中扮演者更为重要的角色。本研究同时也发现，超过60%的操作分类单元未能被进一步分类到纲或目级水平，约45%的操作分类单元与GenBank数据库中已描述种类的序列相似度低于或等于97%，表明在近海沉积物中可能存在大量待发现的纤毛虫类群或物种。本研究发现底栖纤毛虫阿尔法多样性从北黄海到南黄海降低的趋势，这一点与之前基于形态学方法的调查结果相似。然而，测序数据显示旋唇纲是最主要类群，而形态学调查表明前口纲和核残迹纲是主要类群。本文也探讨了可能造成分子与形态学研究结果差异的一些潜在原因。     

黄海底栖纤毛虫的群落结构与时空变化

采用密度梯度离心结合定量蛋白银染色(Ludox-QPS)方法,对2010年7月和11月获自黄海海域沉积物中的底栖纤毛虫进行了群落结构研究,并结合环境因子进行了分析。结果表明:7月浒苔暴发期间,纤毛虫现存量以北黄海、南黄海近岸和长江口外海域较高,南黄海离岸站位较低;11月的纤毛虫丰度和生物量均明显高于7月,南黄海近岸站位的丰度和生物量较高,且向外海随水深增大呈减少的趋势。11月丰度和生物量前三位的类群与7月一致,前口类丰度所占比例最高,核残迹类生物量所占比例最高。肉食性纤毛虫均是两个月份的最优势摄食类群。11月纤毛虫的物种数、Margalef指数和香农-威纳指数均高于7月,且均以南黄海近岸海域较高,而离岸海域较低;纤毛虫丰度、生物量、物种数、Margalef和香农-威纳指数与底层水温度和沉积物中值粒径呈显著正相关。冷水团对底栖纤毛虫群落结构和分布有一定的影响,且是多个环境因子的共同影响。两个月份纤毛虫群落间的Jaccard相似系数值高于单个月份南北黄海和冷水团内外的系数值,表明黄海底栖纤毛虫的物种组成在季节间的差异可能小于不同海域之间的差异。7月南黄海近岸较高的纤毛虫现存量和多样性表明,浒苔的死亡和降解可能通过级联效应促进了近岸站位纤毛虫的生长。     

Heterotrophic microbial communities on the water-sediment boundary in the Kara Sea

The qualitative and quantitative characteristics of the heterotrophic microbial communities (bacteria, flagellates, and ciliates) in the thin water-sediment layer in the Kara Sea are analyzed. The bacterial abundance correlated with the concentration of organic matter, whereas their size depended on the abundance of heterotrophic flagellates. The number of species of heterotrophic flagellates increased with the increase in the bacterial number. A positive relationship between the bacterial abundance and the ration of heterotrophic flagellates was observed at the offshore stations, probably due to the grazing pressure. The density of the ciliates on the soft silty and sandy-silty sediments was extremely low. The share of upstream filter feeding ciliate species increased with the increase in the abundance of the flagellates, probably due to the shift to less selective feeding strategies at higher values of the food concentrations. The classification of the heterotrophic microbial communities in the surface sediment layer has revealed two distinct types of the communities. The river communities are rich in species and are characterized by the high abundance of microorganisms. They are gradually replaced by marine communities at the salinity of 9%.     

Macrofauna Communities in the Eastern Mediterranean Deep Sea

Abstract. During two expeditions with RV ‘Meteor’ in summer 1993 and winter 1997/98 the structural and functional diversity of the benthic system of the highly oligotrophic eastern Mediterranean deep sea was investigated. The macrofauna communities were dominated by polychaetes even at the deepest stations. The fauna at shallow stations was dominated by surface deposit feeders, whereas subsurface deposit feeders and predators generally increased with depth. A high percentage of suspension‐feeding Porifera was found in the Levantine Basin. Mean abundance and number of taxa of both expeditions were significantly correlated to depth and distance to the nearest coast as well as to the total organic carbon (TOC) content in sediments. Numbers of taxa and abundance decreased generally with depth, although lowest numbers were not found at the deepest stations but in the extremely oligotrophic Levantine and Ierapetra Basin. Biomass measured during the second cruise was extremely low in the Ierapetra Basin and comparable to other extreme oligotrophic seas. The significant correlations found for TOC contents and macrofauna with distance to coast during both expeditions apparently reflect the role of hydrographically governed transport of organic matter produced in coastal regions into greater and extreme depths of the Mediterranean Sea. Seasonal differences in macrofauna communities due to seasonal differences in food supply were not found. However, recent large‐scale hydrographic changes (Eastern Mediterranean Transient, EMT) might change the oligotrophy and, thus, the structure of the benthic communities in the Eastern Mediterranean deep sea.     

中国北方砂栖纤毛虫的空间分布及其驱动因素

为深入了解不同地理尺度因素对驱动微型生物群落空间结构的相对影响,本研究于2020年10月调查了中国北方14个砂质潮间带的砂栖纤毛虫群落。研究结果如下:（1）检获纤毛虫105种,隶属26目65属,按丰度优势依次为帆口目、小胸目和环毛目;（2）黄海、渤海两区域的环境因子存在显著差异,但纤毛虫群落组成趋于相似;（3）偏Mental分析显示,环境条件较空间距离在纤毛虫群落组成的驱动中更为重要,其中盐度、粒度和海滩坡度是解释纤毛虫空间分布的最优环境因子组合,而潮差和溶解无机氮含量是次要影响因子;（4）沿海区域微型生物的强扩散效应在一定程度上掩盖了环境异质性影响。综上,由于沿海生态系统中微型生物受到更少扩散限制,在空间分布格局的形成上,环境条件的影响比空间距离更重要。本研究为海洋微型生物地理学提供了基础数据,有助于在全球变化背景下制定沙滩管理和保护规划。     

Planktonic ciliates in the Mediterranean Sea: longitudinal trends

We analysed samples taken through the euphotic zone from 18 stations between the Ligurian Sea (6°E) and the Levantin Basin (32°E) from 24 May to 25 June 1996. Both ciliate and chlorophyll concentrations ranged over a factor of about 7, but ciliate concentrations (0.4–2.8 mg C m³) varied irregularly compared to a longitudinal decline, west to east, in chlorophyll concentration (0.07–0.48 mg m³). The lower chlorophyll concentrations (0.1 mg m²) of the eastern basin stations corresponded with a relatively high stock of ciliates (0.5 mg C m²). Large mixotrophic ciliates were more abundant, in both absolute and relative terms, in the eastern Mediterranean stations with less chlorophyll. The species diversity of tintinnid ciliates appeared higher in the central and eastern basins compared to the west. Our results suggest a shift from the western to eastern Mediterranean in the planktonic food towards a microbially dominated system.     

Comparative study on the fauna composition of intertidal invertebrates between natural and artificial substrata in the northeastern coast of Jeju Island

This study was carried out to learn about differences in the sessile macrobenthic fauna communities between the artificial and natural habitats. There were some differences in terms of species composition and dominant species and community structure between two habitat types. The dominant species include Pollicipes mitella and Granuilittorina exigua in natural rocky intertidal zones; Monodonta labio confusa, Ligia exotica, Tetraclita japonica in the artificial rocky intertidal zones. Among all the species, L. exotica and T. japonica occurred only in the artificial rocky intertidal zone. The results of cluster analysis and nMDS analysis showed a distinct difference in community structure between artificial and natural rocky intertidal zones. The fauna in the natural rocky intertidal zones were similar to each other and the fauna in the artificial rocky intertidal zones were divided depending on the slope of the substratum. In the case of a sloping tetrapod, M. labio confusa and P. mitella were dominant, but at the vertical artificial seawall, Cellana nigrolineata, L. exotica T. japonica were dominant. The analysis of the species presented in natural and artificial rocky intertidal areas showed the exclusive presence of 10 species on natural rocks and 12 species on artificial rocks. The species in the natural rocky intertidal area included mobile gastropods and cnidarians (i.e. rock anemones), and the species in the artificial rocky intertidal area mostly included non-mobile attached animals. The artificial novel structure seems to contribute to increasing the heterogeneity of habitats for marine invertebrate species and an increase the species diversity in rocky coastal areas.     

Meiobenthos and nematode community in Yenisei Bay and adjacent parts of the Kara Sea shelf

Material is collected on a meridional profile from Yenisei Bay to adjacent parts of the Kara Sea shelf. The length of the profile is 550 km; 13 to 62 m depths. A multiple corer and Niemistö corer are used as sampling tools. The meiobenthos is represented by 13 taxa. Nematodes are the most abundant taxon, and harpacticoid copepods (Harpacticoida) are subdominant. The abundance and taxonomic diversity of meiobenthos and nematodes increases from the freshwater part of Yenisei Bay towards the Kara Sea shelf. Three types of taxocene are distinguished: freshwater, brackish-water, and marine. The taxocene of the estuary is not distinguished by any specific set of species and consists of species characteristic of the nematode community both in the freshwater and marine zones. The trophic structure of the taxocene of nematodes in Yenisei Bay is dominated by nematodes with well-defined stoma and are differently armed. The estuary and shelf are dominated by selective and nonselective deposit feeders.     

近海水体环境DNA沉降对沉积物中纤毛虫分子多样性评估的影响

在陆架海区沉积物中, DNA高通量测序技术可检获大量浮游寡毛类和舞毛类等非底栖纤毛虫,这些源于水体的环境DNA(eDNA)如何影响对沉积物中纤毛虫分子多样性的评估,以及影响程度如何尚不明确。本研究选取了黄海冷水团中的两个站位,通过提取水体和沉积物中DNA和RNA,并采用直接提取法和洗脱法提取沉积物DNA,结合DNA和cDNA测序技术,探讨了水体和沉积物中纤毛虫分子多样性的关系。研究表明,基于洗脱DNA法、直接提取DNA法和cDNA法获得的沉积物中纤毛虫OTUs数分别为451、312和324个,其中211个OTUs同时由三种方法检获;而164个OTUs仅通过洗脱DNA法检获,其中89%为相对丰度低于0.1%的稀有类群。直接提取DNA法所获的寡毛类和舞毛类序列数占比达46%,而在洗脱DNA法和cDNA法中占比仅为12%和10%。沉积物中检获的43%—71%的舞毛类和寡毛类OTUs与浅层水(40m)共有,仅19%—29%与深层水(40m)共有,且这些共有的OTUs可同时在浅层水中检获。本研究发现,对沉积物中纤毛虫分子多样性评价造成影响的浮游类群主要来自浅层水,洗脱DNA与cDNA测序均可显著降低浮游类群eDNA的影响。鉴于洗脱DNA法较之cDNA法操作更简便,且避免了反转录过程导致的偏差,因此推荐用于对近海沉积物中纤毛虫等真核微生物的分子多样性研究。     

高通量测序分析北仑河口红树林潮间带底栖真核生物分布

为了解红树林不同潮位沉积物中底栖真核生物群落分布,基于18S rRNA基因采用高通量测序方法分析了广西北仑河口陆缘、林中和海缘3个潮位红树林沉积物中底栖生物群落结构。结果表明,北仑河口潮间带红树林沉积物中底栖生物多样性丰富,Shannon-Wiener指数变化范围在6. 08～6. 73之间; PCA分析表明潮间带中底栖生物群落差异较大,陆缘红树林中扁形动物、节肢动物和软体动物相对丰度较高,林中区域中纤毛虫、环节动物和轮虫相对丰度较高,海缘红树林中硅藻相对丰度较高;红树林中主要OTUs有桡足类的太平洋纺锤水蚤(Acartia pacifica)、硅藻类的海链藻(Thalassiosira sp.)、纤毛虫类的前管虫(Prorodon teres)、多毛类的小头虫(Capitella sp.)。高通量测序方法能较全面反映红树林区微型/小型底栖生物群落,研究结果为丰富红树林底栖生物群落研究和解析底栖生物在红树林生态系统发挥的作用提供基础数据。