An estuarine benthic index of biotic integrity for the Mid-Atlantic region of the United States. II. Index development

A benthic index of biotic integrity was developed for use in estuaries of the mid-Atlantic region of the United States (Delaware Bay estuary through Albemarle-Pamlico Sound). The index was developed for the Mid-Atlantic Integrated Assessment Program (MAIA) of the U.S. Environmental Protection Agency using procedures similar to those applied previously in Chesapeake Bay and southeastern estuaries, and was based on sampling in July through early October. Data from seven federal and state sampling programs were used to categorize sites as degraded or non-degraded based on dissolved oxygen, sediment contaminant, and sediment toxicity criteria. Various metrics of benthic community structure and function that distinguished between degraded and reference (non-degraded) sites were selected for each of five major habitat types defined by classification analysis of assemblages. Each metric was scored according to thresholds established on the distribution of values at reference sites, so that sites with low scoring metrics would be expected to show signs of degradation. For each habitat, metrics that correctly classified at least 50% of the degraded sites in the calibration data set were selected whenever possible to derive the index. The final index integrated the average score of the combination of metrics that performed best according to several criteria. Selected metrics included measures of productivity (abundance), diversity (number of taxa, Shannon-Wiener diversity, percent dominance), species composition and life history (percent abundance of pollution-indicative taxa, percent abundance of pollution-sensitive taxa, percent abundance of Bivalvia, Tanypodinae-Chironomidae abundance ratio), and trophic composition (percent abundance of deep-deposit feeders). The index correctly classified 82% of all sites in an independent data set. Classification efficiencies of sites were higher in the mesohaline and polyhaline habitats (81–92%) than in the oligohaline (71%) and the tidal freshwater (61%). Although application of the index to low salinity habitats should be done with caution, the MAIA index appeared to be quite reliable with a high likelihood of correctly identifying both degraded and non-degraded conditions. The index is expected to be of great utility in regional assessments as a tool for evaluating the integrity of benthic assemblages and tracking their condition over time.     

Refinement, validation, and application of a benthic condition index for Northern Gulf of Mexico estuaries

By applying discriminant analysis to benthic macroinvertebrate data, we have developed an indicator of benthic condition for northern Gulf of Mexico estuaries. The data used were collected by the United states Environmental Protection Agency’s Environmental Monitoring and Assessment Program (EMAP) in the Louisianian Province from 1991 to 1994. This benthic index represents a linear combination of the following weighted parameters: the proportion of expected species diversity, the mean abundance of tubificid oligochaetes, the percent of total abundance represented by capitellid polychaetes, the percent of total abundance represented by bivalve mollusks, and the percent of total abundance represented by amphipods. We successfully validated and retrospectively applied the benthic index to all of the benthic data collected by EMAP in the Louisianian Province. This benthic index was also calculated for independent data collected from Pensacola Bay, Florida, in order to demonstrate its flexibility and applicability to different estuarine systems within the same biogeographic region. The benthic index is a useful and valid indicator of estuarine condition that is intended to provide environmental managers with a simple tool for assessing the health of benthic macroinvertebrate communities.     

Effects of sediment contaminants and environmental gradients on macrobenthic community trophic structure in Gulf of Mexico estuaries

Macrobenthic communities from estuaries throughout the northern Gulf of Mexico were studied to assess the influence of sediment contaminants and natural environmental factors on macrobenthic community trophic structure. Community trophic data were also used to evaluate whether results from laboratory sediment toxicity tests were effective indicators of site-specific differences in benthic trophic structure. A multiple regression model consisting of five composite factors (principal components) was used to distinguish the effects of sediment contaminants and environmental variables on benthic community trophic structure. This model explained 33.5% of the variation in macrobenthic trophic diversity (p<0.001), a variable derived from the distribution of taxas among nine original trophic categories. A significant negative relatinship was found between principal components reflecting concentrations of sediment contaminants and macrobenthic trophic diversity. Detritivores including surface deposit-feeders (SDF), subsurface deposit-feeders (SSDF), and filter feeders (FF) were numerically dominant at 201 random sites, each group accounting for 25–30% of total macrobenthic abundance. The relative abundance of SDFs was considerably lower (12.1±2.9% to 17.1±4.4%) at sites where sediment contaminant concentrations exceeded minimum biological effects thresholds (ER-L values from Long and Morgan 1990 than at sites sampled at random (29.3±5.7%). SSDFs were proportionally more abundant at contaminated sites (42.0±7.7% to 63.6±10.3%) versus random sites (27.5±5.7%), and the relative abundance of SSDFs was positively correlated with concentrations of particular contaminants. Benthic trophic structure was also found to be a function of salinity, where the proportion of SSDFs was negatively correlated with salinity (p=0.035, r=−0.223, n=326). Silt-clay content loaded fairly strongly on the first principal component, but trophic structure parameters were not significantly correlated with sediment grain size or dissolved oxygen (perhaps due, in part, to covariation). Results from laboratory sediment toxicity tests with mysids were predictive of differences in macrobenthic trophic structure in situ (i.e., mysid survival was negatively correlated with %SSDF; p<0.001, r=−0.292, n=326). Results from laboratory sediment toxicity tests with ampeliscid amphipods were not indicative of site-specific differences in benthic trophic structure.     

An estuarine benthic index of biotic integrity (B-IBI) for Chesapeake Bay

A multimetric benthic index of biotic integrity (B-IBI) was developed using data from five Chesapeake Bay sampling programs conducted between 1972 and 1991. Attributes of the index were selected by comparing the response of 17 candidate measures of benthic condition (metrics) between a set of minimally affected reference sites and at all other sites for which data were available. This procedure was conducted independently for each of seven habitats defined by salinity and substrate. Fifteen of the 17 candidate metrics differed significantly between reference sites and other sites for at least one habitat. No metric differed significantly in all seven habitats; however, four metrics, species diversity, abundance, biomass, and percent of abundance as pollution-indicative taxa, differed in six habitats. The index was calculated by scoring each selected metric as 5, 3, or 1 depending on whether its value at a site approximated, deviated slightly from, or deviated greatly from conditions at the best reference sites. Validation based on independent data collected between 1992 and 1994 indicated that the index correctly distinguished stressed sites from reference sites 93% of the time, with the highest validation rates occurring in high salinity habitats.     

Recolonization of Intertidal Infauna in Relation to Organic Deposition at an Oyster Farm in Atlantic Canada—A Field Experiment

A field experiment was carried out to investigate the patterns of macrobenthic recolonization and to determine the effects of biodeposition on benthic communities at an intertidal oyster culture site in New Brunswick, Canada. Total organic deposition in azoic organic-free sediment trays was generally higher within the farm compared to reference sites. Two weeks after deployment of trays, total organic content had reached 1.1%. The abundance, species number, and diversity of the macrobenthic community were positively correlated with the total organic content in the experimental trays, but the correlations between community parameters and organic content were negative in the ambient sediment. The results suggest that organic matter in sediment may have positive effects on macrobenthic infauna at low levels as an additional food source but may be harmful to benthic animals at high levels. This study also indicates that location in the intertidal zone is a major parameter affecting the community structure of macrobenthic colonization.     

Relationships between benthic community condition, water quality, sediment quality, nutrient loads, and land use patterns in Chesapeake Bay

Associations between macrobenthic communities, measures of water column and sediment exposure, and measures of anthropogenic activities throughout the watershed were examined for the Chesapeake Bay, U.S. The condition of the macrobenthic communities was indicated by a multimetric benthic index of biotic integrity (B-IBI) that compares deviation of community metrics from values at reference sites assumed to be minimally altered by anthropogenic sources of stress. Correlation analysis was used to examine associations between sites with poor benthic condition and measures of pollution exposure in the water column and sediment. Low dissolved oxygen events were spatially extensive and strongly correlated with benthic community condition, explaining 42% of the variation in the B-IBI. Sediment contamination was spatially limited to a few specific locations including Baltimore Harbor and the Southern Branch of the Elizabeth River and explained about 10% of the variation in the B-IBI. After removing the effects of low dissolved oxygen events, the residual variation in benthic community condition was weakly correlated with surrogates for eutrophication—water column concentrations of total nitrogen, total phosphorus, and chlorophylla. Associations between benthic conditions and anthropogenic inputs and activities in the watershed were also studied by correlation analysis. Benthic condition was negatively correlated with measures of urbanization (i.e., population density, point source loadings, and total nitrogen loadings) and positively correlated with watershed forestation. Significant correlations were observed with population density and nitrogen loading below the fall line, but not above it, suggesting that near-field activities have a greater effect on benthic condition than activities in the upper watershed. At the tributary level, the frequency of low dissolved oxygen events and levels of sediment contaminants were positively correlated with population density and percent of urban land use. Sediment contaminants were also positively correlated with point source nutrient loadings. Water column total nitrogen concentrations were positively correlated with nonpoint nutrient loadings and agricultural land use while total phosphorus concentrations were not correlated with land use or nutrient loadings. Chlorophylla concentrations were positively correlated with nitrogen and phosphorus concentrations in the water column and with agricultural land use but were not correlated with nutrient loads.     

Nekton habitat quality at shallow water sites in two Rhode Island coastal systems

We evaluated nekton habitat quality at 5 shallow-water sites in 2 Rhode Island systems by comparing nekton densities and biomass, number of species, prey availability and feeding, and abundance of winter flounderPseudopleuronectes americanus. Nekton density and biomass were compared with a 1.75-m² drop ring at 3 sites (marsh, intertidal, and subtidal) in Coggeshall Cove in Narragansett Bay and two subtidal sites (eelgrass and macroalgae) in Ninigret Pond, a coastal lagoon. We collected benthic core samples and examined nekton stomach contents in Coggeshall Cove. We identified 16 species of fish, 16 species of crabs, and 3 species of shrimp in our drop ring samples. A multivariate analysis of variance indicated differences in total nekton, invertebrates, fish, and winter flounder across the five sites. Relative abundance of benthic invertebrate taxa did not match relative abundance of prey taxa identified in the stomachs. Nonmetric multidimensional scaling plots showed groupings in nekton and benthic invertebrate prey assemblages among subtidal, intertidal, and marsh sites in Coggeshall Cove. Stepwise multiple regression indicated that biomass of macroalgae was the most important variable predicting abundance of nekton in Coggeshall Cove, followed by elevation and depth. In Rhode Island systems that do not experience chronic hypoxia, macroalgae adds structure to unvegetated areas and provides refuge for small nekton. All sites sampled were characterized by high abundance and diversity of nekton pointing to the importance of shallow inshore areas for production of fishes and decapods. Measurements of habitat quality should include assessment of the functional significance of a habitat (this can be done by comparing nekton numbers and biomass), some measure of habitat diversity, and a consideration of how habitat quality varies in time and space.     

Benthic Oxygen Fluxes Measured by Eddy Covariance in Permeable Gulf of Mexico Shallow-Water Sands

Oxygen fluxes across the sediment–water interface reflect primary production and organic matter degradation in coastal sediments and thus provide data that can be used for assessing ecosystem function, carbon cycling and the response to coastal eutrophication. In this study, the aquatic eddy covariance technique was used to measure seafloor–water column oxygen fluxes at shallow coastal sites with highly permeable sandy sediment in the northeastern Gulf of Mexico for which oxygen flux data currently are lacking. Oxygen fluxes at wave-exposed Gulf sites were compared to those at protected Bay sites over a period of 4 years and covering the four seasons. A total of 17 daytime and 14 nighttime deployments, producing 408 flux measurements (14.5 min each), were conducted. Average annual oxygen release and uptake (mean ± standard error) were 191 ± 66 and ?191 ± 45 mmol m^?2 day^?1 for the Gulf sites and 130 ± 57 and ?152 ± 64 mmol m^?2 day^?1 for the Bay sites. Seasonal variation in oxygen flux was observed, with high rates typically occurring during spring and lower rates during summer. The ratio of average oxygen release to uptake at both sites was close to 1 (Bay: 0.9, Gulf: 1.0). Close responses of the flux to changes in light, temperature, bottom current velocity, and wave action (significant wave height) documented tight physical–biological, benthic–pelagic coupling. The increase of the sedimentary oxygen uptake with increasing temperature corresponded to a Q₁₀ temperature coefficient of 1.4 ± 0.3. An increase in flow velocity resulted in increased oxygen uptake (by a factor of 1–6 for a doubling in flow), which is explained by the enhanced transport of organic matter and electron acceptors into the permeable sediment. Benthic photosynthetic production and oxygen release from the sediment was modulated by light intensity at the temporal scale (minutes) of the flux measurements. The fluxes measured in this study contribute to baseline data in a region with rapid coastal development and can be used in large-scale assessments and estimates of carbon transformations.     

Benthic foraminiferal response to changes in mining pattern: a case study from the Zuari estuary,Goa, India

Being sensitive to environmental changes, foraminifera have been extensively used to monitor pollution level in the marine environment, including the effect of mining in coastal areas. In the Goa state of India, the rejects from opencast mining on land largely find their way to the estuaries, as washout during monsoon. Additionally, the Mormugao Port at the mouth of the Zuari estuary is the hub of activities due to the transport of ore from hinterland areas by barges and its subsequent loading for export. On the directive of the Supreme Court of India, all the mining-related activities abruptly stopped throughout India, including that in Goa in 2012, and got reinstated in 2015. Therefore, it provided a fit case to test the effectiveness of benthic foraminifera as an indicator of environmental impact due to mining activities. A total of ten surface sediment samples from five locations in Zuari estuary were collected from a depth range of 4.5–8.5 m in the years of 2013 and 2016 and were analyzed for both the living (stained) and dead benthic foraminifera. The year 2013 represents a time interval immediately after the closure of extensive mining activity, and the sampling during 2016 represents minimal mining. The living benthic foraminiferal abundance was higher (19–54/g sediment) during 2013 and decreased substantially during 2016 (3–22/g sediment), suggesting an adverse effect of activities associated with mine closure on benthic foraminifera. Additionally, the relative abundance of Ammonia was also significantly low during the year 2016. The temporal variation in dead foraminifera was, however, different than that of the living foraminifera. The differential response was attributed to the terrigenous dilution as a result of change in sedimentation rate. Therefore, we conclude that living foraminifera correctly incorporate the changes in mining pattern and may be used as an effective tool to monitor the impact of mining. We further suggest that the potential counter effect of terrigenous dilution on total and living benthic foraminiferal population should be considered while interpreting temporal variations in foraminiferal abundance in marginal marine settings.     

Genetic effects of a large-scaleSpartina alterniflora (smooth cordgrass) dieback and recovery in the northern Gulf of Mexico

A large-scale dieback event struck marshes along the northwestern Gulf of Mexico coast during summer 2000, in apparent response to a prolonged and severe drought. Along the Louisiana coast, large areas of the dominant marsh species,Spartina alterniflora, turned brown, followed by death of at least the aboveground structures of entire plant mortality. Key ecological and genetic measures were studied in a dieback-affected marsh in southwest Louisiana (C83 marsh, Sabine National Wildlife Refuge), for which existed predieback ecologic and genetic datasets. Effects on genetic diversity only were studied in a second set of sites in southeastern Louisiana (near Bay Junop), where the dieback was more widespread. We hypothesized that stem density, live aboveground biomass, and genetic diversity would be significantly reduced compared to predieback conditions and to nearby unaffected marshes. Stem densities and biomass levels approached predieback conditions 14 months after first observance of the dieback in the Sabine marsh and were similar to or exceeded the same measures for a nearby unaffected marsh. DNA extracted from leaf samples in the Sabine and Bay Junop sites was used to construct genotype profiles using AFLPs and analyzed using the complement of Simpson’s Index (1-D), the richness measure G/N, average heterozygosity <H>, and the estimated proportion of polymorphic genes <P>. Genetic diversity was relatively unaffected by the dieback at either the Sabine or Bay Junop sites. Evidence from field observations and the results of the genetic analyses suggest that seedling recruitment is an important factor in the recovery of both the Bay Junop and C83 sites, although re-growth from surviving below-ground rhizomes appeared to dominate recovery at the latter site. Survival of below-ground structures, leading to the rapid recovery observed, indicates a high level of resilience of the Sabine marsh to drought-induced stress. Still, the genetic diversity ofS. alterniflora-dominated marshes may be promoted by occasional disturbance events, which produce open areas in which seedling recruitment can occur.     

Ecosystem Engineering Effects of <Emphasis Type="Italic">Aster tripolium</Emphasis> and <Emphasis Type="Italic">Salicornia procumbens</Emphasis> Salt Marsh on Macrofaunal Community Structure

This paper examines how perennial Aster tripolium and annual Salicornia procumbens salt marshes alter the biomass, density, taxon diversity, and community structure of benthic macrofauna, and also examines the role of elevation, sediment grain size, plant cover, and marsh age. Core samples were collected on a fixed grid on an intertidal flat in the Westerschelde estuary (51.4° N, 4.1° E) over 5 years (2004–2008) of salt marsh development. In unvegetated areas, macrobenthic biomass, density, and taxon diversity were highest when elevation was highest, benthic diatoms were most abundant, and sediment median grain size was smallest. In contrast, in salt marsh areas, macrobenthic biomass and taxon diversity increased with median grain size, while the effects of elevation and diatom abundance on macrobenthic biomass, density, and diversity were not significant. In fine sediments, macrofaunal community structure in the salt marsh was particularly affected; common polychaetes such as Nereis diversicolor, Heteromastus filiformis, and Pygospio elegans had low abundance and oligochaetes had high abundance. Marsh age had a negative influence on the density of macrofauna, and A. tripolium stands had lower macrofaunal densities than the younger S. procumbens stands. There were no significant effects of marsh age, plant cover, and vegetation type on macrobenthic biomass, taxon diversity, and community structure. The results highlight that ecosystem engineering effects of salt marsh plants on macrofauna are conditional. Organic enrichment of the sediment and mechanical hindering of macrofaunal activity by plant roots are proposed as plausible mechanisms for the influence of the salt marsh plants on macrofauna.     

Total mercury and methylmercury in sediments near offshore drilling sites in the Gulf of Mexico

Concentrations of total Hg in sediments near six drilling sites in the Gulf of Mexico were elevated well above average background values of 40–80 ng/g. The excess Hg was associated with barite from discharged drilling mud. In contrast with total Hg, concentrations of methylmercury (MeHg) in these sediments did not vary significantly at nearfield (<100 m) versus farfield (>3 km) distances from the drilling sites. Observed variability in concentrations of MeHg were related to local differences in redox state in the top 10 cm of sediment. Low to non-detectable concentrations of MeHg were found in nearfield sediments that were anoxic, highly reducing and contained abundant H₂S. At most drilling sites, nearfield samples with high concentrations of total Hg (>200 ng/g) had similar or lower amounts of MeHg than found at background (farfield) stations. Higher values of MeHg were found in a few nearfield sediments at one site where concentrations of TOC were higher and where sediments were anoxic and moderately reducing. Overall, results from this study support the conclusion that elevated concentrations of MeHg in sediments around drilling sites are not a common phenomenon in the Gulf of Mexico.     

Development and validation of an estuarine biotic integrity index

We tested hypotheses about how estuarine fish assemblages respond to habitat degradation and then integrated these responses into an overall index, the Estuarine Biotic Integrity Index (EBI), which summarized observed changes. Fish assemblages (based on trawl catches) and habitat quality were measured monthly or biweekly at nine sites in two estuaries from March 1988 to June 1990. Submerged aquatic vegetation habitats were classified as low or medium quality based on year-round measurements of chemical and physical characteristics (phytoplankton blooms; macroalgae; dissolved oxygen; nutrients; dredged channels). We tested 15 metrics and selected 8 for inclusion in the EBI: total number of species, dominance, fish abundance (number or biomass), number of nursery species, number of estuarine spawning species, number of resident species, proportion of benthic-associated fishes, and proportion abnormal or diseased. Fish assemblages in low-quality sites had lower number of species, density, biomass, and dominance compared with medium-quality sites. Fish abundance peaked in July and August, and was lowest in January to March. The seasonal cycle in low-quality sites was damped compared with medium-quality sites. Abundances of fishes using estuaries as a spawning and nursery area and of benthic species were lower in low-quality sites compared to medium-quality sites. The individual metrics and the overall index correlated with habitat degradation. The EBI based on biomass did not do better than the EBI based on number, indicating that the extra effort to obtain biomass may not be warranted. We suggest the EBI is a useful indicator of estuarine ecosystem status because it reflects the relationship between anthropogenic alterations in estuarine ecosystems and the status of higher trophic levels.     

Benthic Community Structure and Sediment Properties in Barnegat Bay,New Jersey,Before and After Hurricane Sandy

Hurricane Sandy was an extraordinarily large storm that affected most of the eastern coast of the USA in October 2012. To assess this storm’s impact, the benthic invertebrate community structure and sediment properties were compared in samples collected 3.5 months prior to (July 2012) and 8 months after (July 2013) the hurricane at 97 locations in Barnegat Bay, New Jersey, USA. Barnegat Bay is a shallow back-barrier estuary just north of where Sandy made landfall. For all locations taken together, sediment total nitrogen concentration was lower afterwards, while total organic carbon and total phosphorus concentrations were similar. Sediment median particle size was the same before and after, but the sediment was better sorted after the storm. There were no differences in total abundance of invertebrates, species richness, species diversity, or the abundance of polychaetes, bivalves, or gastropods. Malacostracan crustaceans were more abundant after Sandy (average 82 (0.04 m²)^?1) than they were before (average 64), due almost entirely to increased abundance of ampeliscid amphipods, which showed a shift toward smaller sizes in 2013. Annelids in the order Clitellata were on average less abundant after the hurricane (17) than before (53). The apparent minimal effect of Sandy on the benthic community in Barnegat Bay was probably because the passage of the hurricane had no detectable effects on salinity or dissolved oxygen concentrations throughout the bay.     

An estuarine benthic index of biotic integrity for the Mid-Atlantic region of the United States. I. Classification of assemblages and habitat definition

An objective of the Mid-Atlantic Integrated Assessment Program (MAIA) of the U.S. Environmental Protection Agency is to develop an index for assessing benthic community condition in estuaries of the mid-Atlantic region of the United States (Delaware Bay through Pamlico Sound). To develop such an index, natural unimpaired communities must first be identified and variability related to natural factors accounted for. This study focused on these two objectives; Lnansó et al. (2002) describe the index. Using existing data sets from multiple years, classification analyses of species abundance and discriminant analysis were employed to identify major habitat types in the MAIA region and evaluate the physical characteristics that structure benthic infaunal assemblages. Sampling was restricted to soft bottoms and to the index development period, July through early October. The analyses revealed salinity and sediment composition as major factors structuring infaunal assemblages in mid-Atlantic estuaries. Geographical location was a secondary factor. Nine habitat classes were distinguished as a combination of 6 salinity classes, 2 sediment types, and the separation of North Carolina and Delaware-Chesapeake Bay polyhaline sites. The effect of sediment types on faunal assemblages was restricted to polyhaline sites, which were separated into two sediment groups above and below 90% sand content. Assemblages corresponding to each of these 9 habitats were identified in the context of widely recognized patterns of dominant taxa. Differences between North Carolina and Delaware-Chesapeake Bay polyhaline assemblages were attributed to the relative contributions of species and not to differences in species composition. No zoogeographic discontinuities could be identified. Our results reinforce the findings of recent studies which suggest that, with respect to estuarine benthic assemblages, the boundary between the Virginian and the Carolinian Provinces be moved to a new location south of Pamlico Sound.     

Small-scale spatial variation of macrobenthic community structure

Examination of small-scale spatial variation in essential to understanding the relationships between environmental factors and benthic community structure in estuaries. A sampling experiment was performed in October 1993 to measure infauna association with sediment composition and salinity gradients in Nueces Bay, Texas, USA. The bay was partitioned into four salinity zones and three sediment types. Higher densities of macrofaua, were found in sediments with greater sand content and in areas with higher salinity. High diversity was also associated with high homogeneous salinity (31–33‰) and greater sand content. Macrofauna biomass and diversity were positively correlated with bottom salinity, porewater salinity, and bottom dissolved inorganic nitrogen (DIN). Furthermore, species dominance shifted along the estuarine gradient.Streblospio benedicti dominated at lower salinity, but,Mediomatsus ambiseta andMulinia lateralis were the dominant species at higher salinity. Statistical analyses revealed significant correlations for sediment characteristics (i.e., increased fine sediments, water content, and total organic carbon) with decreased total abundance and diversity. Increased salinity and DIN were correlated with increased total biomass, diversity, and macrofauma community structure. These physico-chemical variables are regulated by freshwater inflow, so inflow is an important factor influencing macrofauna community structure by indirectly influencing the physico-chemical environment.     

Aquifer Discharge Drives Microbial Community Change in Karst Estuaries

Karst estuaries are unique systems governed by freshwater inputs that flow directly to the sea through karst conduits and/or matrices. Because they are found at the interface between terrestrial and marine environments, they can act as sentinels to climate change and as indicators of aquifer health. The physical and geochemical gradients formed in karst estuaries are a direct result of the interactions between inland hydrological conditions and sea level. To examine the influence these gradients have on microbial communities in the water column and sediment of a karst estuary, we studied the spring-fed Double Keyhole Karst Estuary in west central Florida for a 2-year period. Four sites were monitored within this system starting at the Double Keyhole Spring Conduit extending 2 km west through the estuary toward the Gulf of Mexico. Water column and sediment samples were collected quarterly at all sites from September 2011 through September 2013. Archaeal, bacterial, and microbial eukaryote communities were analyzed using quantitative PCR and length-heterogeneity PCR. The biological communities were analyzed in the context of hydrological, physical, and geochemical parameters in order to determine which factor(s) governed the observed changes of microbial abundance and richness. The major finding of this study was that microbial community change in this karst estuary was primarily driven by the volume of aquifer discharge and associated physical gradients, and less by the geochemical fluctuations within the system.     

Contaminants in sediments from the central Gulf of Mexico

Surface sediment samples at 89 locations and 300-cm cores from 43 sites in the Mississippi Sound were examined for evidence of pollutant impact upon this coastal environment. Chemical variables determined were total organic carbon, Kjeldahl nitrogen, phenols, and hydrocarbons. Values of these pollutant indicators were about the same or lower in Gulf of Mexico samples compared to Missippi Sound sediments and considerably lower than those from rivers and bays emptying into the sound, indicating limited impact from sites of pollutant sources into the sound. Concentrations of sedimentary pollutants peaked in the Pascagoula River where levels of total organic carbon (TOC), Kjeldahl nitrogen (TKN), phenols, and hydrocarbons exceeded sound values by one to three orders of magnitude. Analysis of cores shows pollutant intrusion to sediment strata predating industrial development. The level of pollution varies from site to site but fortunately is only serious at localized sites within the sound.     

Composition of macrobenthos from the Central Indian Ocean Basin

The deep sea is well known for its high faunal diversity. But the current interest in its abundant polymetallic nodules, poses a threat to the little known benthic organisms surviving in this unique environment. The present study is the first attempt to document the Indian Ocean abyssal benthic diversity of macroinvertebrates and to investigate its relation to the surface primary production (chl-a), sediment labile organic matter, organic carbon and texture. The present study is based on 87 individuals. Altogether 39 macroinvertebrate genera were obtained from water depths of 4500–5500 m from 23 box cores. Reduction in macrobenthic density was seen towards the southern latitudes. The area was dominated by deposit feeding macrobenthos. Vertically, the fauna was distributed down to 30 cm depth, with the highest faunal density in the top 2–5 cm sediment section. The values for population density were strongly correlated with surface water chl-a and sediment protein, indicating supply of fresh organic matter as a critical factor for maintaining the deep sea benthic diversity and abundance.     

http://www.sciencedirect.com/science/article/pii/S1674987111001307

South China Sea(SCS) is the largest Western Pacific marginal sea.However,microbial studies have never been performed in the cold seep sediments in the SCS.In 2004."SONNE" 177 cruise found two cold seep areas with different water depth in the northern SCS.Haiyang 4 area,where the water depth is around 3000 m.has already been confirmed for active seeping on the seafloor.such as microbial mats,authigenic carbonate crusts and bivalves.We investigated microbial abundance and diversity in a 5.55-111 sediment core collected from this cold seep area.An integrated approach was employed including geochemistry and 16S rRNA gene phylogenetic analyses.Here,we show that microbial abundance and diversity along with geochemistry profiles of the sediment core revealed a coupled reaction between sulphate reduction and methane oxidation.Acridine orange direct count results showed that microbial abundance ranges from 10~5 to 10~6 cells/g sediment(wet weight).The depth-related variation of the abundance showed the same trend as the methane concentration profile.Phylogenetic analysis indicated the presence of sulphate-reducing bacteria and anaerobic methane-oxidizing archaea.The diversity was much higher at the surface,but decreased sharply with depth in response to changes in the geochemical conditions of the sediments,such as methane,sulphate concentration and total organic carbon.Marine Benthic Group B.Chloroflexi and JSl were predominant phylotypes of the archaeal and bacterial libraries,respectively.