Organic biomarkers for tracing carbon cycling in the Gulf of Papua (Papua New Guinea)

Sediment traps were deployed in the Gulf of Papua in June–July 1997, to determine fluxes of organic matter and inorganic elements from the photic zone to deeper waters at the base of the continental slope and in the northern Coral Sea. Three stations, ranging from 900 to 1500 m depth, had “shallow” traps at 300 m below the water surface and “deep” traps set 100 m above the bottom. Infiltrex II water samplers collected particulate and dissolved organic matter from the Fly, Purari and Kikori rivers, and near-surface water from the shelf of the Gulf of Papua. Samples were analysed for molecular organic biomarkers to estimate the sources of organic carbon and its cycling processes.Dry weight fluxes from the shallow traps ranged from 115 to 181 mg m⁻² day⁻¹ and particulate organic carbon (POC) fluxes ranged from 1.2 to 1.9 mM OC m⁻² d⁻¹ with molar organic carbon to particulate nitrogen ratios (C/N) ranging from 6.0 to 6.5. Fluxes in deep traps were likely influenced by both early diagenesis and entrapment of resuspended shelf sediments. Dry weight fluxes in deep traps ranged from 106 to 574 mg m⁻² day⁻¹ and POC fluxes ranged from 0.6 to 1.5 mM OC m⁻² d⁻¹, with C/N ratios ranging from 8.5 to 10.8. ¹³C/¹²C ratios were −20.2‰ to −21.7‰ in all trap samples, indicating that most of the settling POC was “marine-derived”. Shallow traps had δ¹⁵N values of 6.3‰ to 7.2‰ while the values in deep traps were 4.9–5.0‰, indicating the N-rich near-surface OC was less degraded than that in the deep traps. The biogenic lipids consisted of hydrocarbon, sterol and fatty acid biomarkers indicative of marine zooplankton, phytoplankton and bacteria. Sterol markers for diatoms and dinoflagellates were abundant in the water samples. Highly branched isoprenoid alkenes, usually attributable to diatoms, were also detected in both water and shallow traps. Traces of C₂₆–C₃₄ n-alcohols indicative of land–plant biomarkers, were found in river water samples and in the shallow sediment traps. A large unresolved complex mixture (UCM) of hydrocarbons, and a uniform distribution of n-alkanes, indicative of petroleum hydrocarbons, were also detected in the traps. Hopane and sterane biomarkers detected in the trap oil were characteristic of a marine carbonate source, and the aromatic hydrocarbon composition distinguished at least two different oil signatures.We concluded that mass and POC fluxes were similar to those reported for other continental shelves and marginal oceans in tropical and subtropical regions. There was a dramatic decrease in POC as particles sank, due to zooplankton repackaging and photochemical and bacterial decomposition. Carbon isotopic and biomarker patterns showed most of the POC in the sediment traps was marine-sourced with only traces of terrestrial input. There was a significant flux of petroleum, which may signal the existence of natural petroleum seeps in this region.     

Dynamics and sources of dissolved organic carbon during phytoplankton bloom in hypereutrophic Lake Taihu (China)

To establish the influence of phytoplankton blooms on the dynamics and sources of dissolved organic carbon (DOC) in Lake Taihu, the concentrations and stable carbon isotope values (δ¹³C) of DOC and particulate organic carbon (POC) were analyzed, along with environmental factors, including water temperature, chlorophyll a (Chl a) concentration, phytoplankton community and total bacterial abundance, from March to August 2013 at five sites in Lake Taihu. Significant differences were observed in the DOC concentrations and δ¹³C_DOC values at the sampling sites. On average, the proportion of DOC in the total organic carbon (TOC) pool ranged from 30% ± 10% to 81% ± 7%. POC was positively associated with both Chl a concentration and cyanobacteria biomass, suggesting that cyanobacteria blooms contribute to the POC pool in Lake Taihu. Depleted ¹³C in DOC relative to POC was observed in August, indicating that DOC was partially derived from POC in August. However, Chl a explained only 40% of the variation in DOC in the entirety of Lake Taihu, and at two sites far from the estuary, the contribution of allochthonous carbon was less than 50% in August. These results suggested a greater influence of allochthonous sources on the DOC pool. Moreover, the biodegradability of DOC was further determined by the total dissolved carbohydrates to DOC ratio (TCHO/DOC), specific UV absorbance (SUVA₂₅₄), and the concentrations of bioavailable DOC (BDOC). On average, 17% of the variation in DOC was attributable to the BDOC pool, and the BDOC concentration correlated positively with Chl a, cyanobacteria biomass, and total bacterial abundance, suggesting that cyanobacteria–derived DOC is biodegradable and is preferentially utilized by bacteria.     

The contribution of various types of settling particles to the flux of organic carbon in the Gulf of St. Lawrence

The contents of 31 samples from free-drifting sediment traps deployed in the Gulf of St. Lawrence (GSL) were analyzed for the individual contribution of the different types of particles encountered to the total particulate organic carbon (POC) flux. Two trap models were used in 1993-1994: small traps at 50 m depth and large traps at 50 and 150 m. Total POC fluxes averaged 42 mg C m⁻² d⁻¹ for the more reliable large trap and 149 mg C m⁻² d⁻¹ for the small trap. The POC fluxes were attributed to different classes of particles based upon microscopically determined particle dimensions and carbon/volume algorithms available in the literature. Fecal pellets, followed by phytoplankton, were the major attributable components, with important contributions by microzooplankton, particularly during the summer of 1994. The mean fluxes for pellets (6 and 60 mg  C m⁻² d⁻¹, for the large and small traps, respectively) and phytoplankton (3.2 and 42.9 mg C m⁻² d⁻¹) were in the range of those encountered in other areas of moderate primary productivity. Mean zooplankton carbon fluxes (1.8 and 8.5 mg C m⁻² d⁻¹, respectively), however, reflect higher than average zooplankton abundances in the GSL. The C fluxes of specific algal groups confirmed the existence of three trophic regimes previously identified from water column studies and numeric cell fluxes: (1) a period when diatoms were dominant during the spring, (2) a longer interval, which was dominated by dinoflagellates at most others times of the year, and (3) a period of transition during summer. Carbon of animal origin dominated the attributable flux, including an important fraction associated with heterotrophic dinoflagellates. The contribution of marine snow to the total flux (estimated as the difference between the total POC flux and the sum of the attributed components) frequently amounted to more than 60%. The true importance of marine snow remains uncertain, however, because the errors associated with each of the measured components accumulate to produce large uncertainties. The methodological problems involved are discussed.     

Carbon input, production and turnover in the interstices of a Lake Tegel bank filtration site, Berlin, Germany

The sandy littoral zone of Lake Tegel (Berlin, Germany) was investigated during 2004–2006 down to sediment depths ≥26 cm to derive a scheme of seasonal carbon turnover under induced bank filtration conditions. Carbon turnover processes were quantified regarding external and internal sources of dissolved and particulate organic matter (DOM and POM), primary production, community respiration, redox potential as well as specific loads of soluble chemical compounds such as nitrogen, iron, manganese and DOC.Over the course of the year, infiltrating DOC decreased by about 13–20% within the upper 26 cm sediment of the infiltration stretch. Gradients of all observed soluble compounds that are highly cross-linked to biological activities were highest in the topmost centimetre. In this depth mass balances (output–input) were negative concerning NO₃-N (−1 mg dm⁻² d⁻¹, summer mean) and DOC (−2 mg dm⁻² d⁻¹, winter mean), respectively, while specific loads of cations such as manganese reached up to 0.2 mg dm⁻² d⁻¹ during summer. Carbon mineralization ranged between 3 and 7 mg C dm⁻² d⁻¹ and was nearly twice as high in summer as in winter. The turnover of the infiltrating DOC contributed maximally 25% in summer to 50% in winter to the entire organic carbon mineralization. Gross and net primary production differed up to a factor of >10, indicating very fast turnover reactions and the predominance of community respiration and mineralization, respectively. The POC in the upper sediment layer (10 cm) temporally varied around 1% sediment d.w.; benthic algae, organic seston input and autumnal leaf fall contributed similar percentages to the POC pool.     

Influence of food web structure on the biochemical composition of seston,zooplankton and recently deposited sediment in experimental freshwater mesocosms

The effects of food web structure on the quantity and biochemical composition of seston, zooplankton and recently deposited sediment in experimental freshwater mesocosms were examined. Food web structure was manipulated by addition of zooplanktivorous fish. Biochemical characterisations were carried out using lipid biomarkers (sterols, fatty acids, chlorophyll-derived compounds and long-chain alkanediols). Fish addition decreased zooplankton biomass and increased seston biomass and deposited sediment through a trophic cascade. Fish presence strongly influenced the biochemical characteristics of seston and sediment. In contrast, food web structure had a minor impact on the lipid biomarker composition of zooplankton. Although the relative abundance of sterols in the different compartments did not differ strongly between treatments, sterol profiles in seston and sediment depended on food web structure. The predominance of Δ⁷-sterols in seston and sediment in the fish treatment indicated a major contribution of Chlorophyceae. In contrast, the distribution of sterols in seston and sediment in the fishless treatment, dominated by cholesterol, indicated a major zooplanktonic input. The distribution of fatty acids and the relative abundance of chlorophyll-derived compounds and long-chain alkanediols agreed with the predominant contribution of phytoplankton or zooplankton to seston and sediment in the two treatments. The relative abundance of bacterial biomarkers suggested that the contribution of bacteria was rather low. The high relative abundance of polyunsaturated fatty acids (PUFAs) and the absence of stanols in sediments suggested low microbial reworking of organic matter in the recently accumulated sediments. The trophic cascade, generated by the addition of fish, increased the relative abundance of PUFAs in deposited organic matter, thus enhancing sediment quality and potential degradability.     

Estimation of particulate organic carbon flux in relation to photosynthetic production in a shallow coastal area in the Seto Inland Sea

Sediment trap experiments were carried out three times from 1999 to 2000, in the western part of the Seto Inland Sea (Suo-Sound), Japan. We investigated both the particulate flux and the composition of chemical substances in the sediment trap samples. Based on the results, we discuss the origin of particulate organic carbon (POC) collected by the sediment traps in a coastal area. Moreover, we purposed to estimate the flux of the portion of the POC that is derived from phytoplankton photosynthesis. The fluxes of POC varied between 677 and 3424 mgC m(-2) d(-1). Significant positive correlations between POC and aluminum (Al) fluxes suggested that these components show almost the same behaviour. The mean value of the Al flux was about eight times higher than that of Al burial rates on the sediment surface. Therefore, it seems that the POC flux observed with the sediment traps was considerably overestimated. Moreover, judging from the fact that Al is a typical terriginous element, it seems that most of the POC collected in the sediment traps derived from the re-suspended surface sediment or sediment transported laterally from shallow flanks such as intertidal mudflats. The fluxes of chlorophyll a (Chl a) were independent of the POC fluxes, and a relatively consistent correlation was found between Chl a abundance in the water column and the Chl a flux. Moreover, surface sediment Chl a content was approximately 100 times lower than that of suspended matter. Therefore, resuspension and terriginous contributions to Chl a collected in sediment traps are likely to be negligible. The POC content in the trap samples varied between 22.4 and 70.7 mg g(-1) dry weight. The variations of POC contents were positively correlated with the Chl a contents: POC(mg g(-1))=76.5 x Chl a(mg g(-1)) + 26.0 (r=0.95, p<0.01, n=9). This result shows that POC contents strongly corresponded with phytoplankton and their debris. It was also considered that the fraction of POC derived from phytoplankton primary production could be estimated as Chl a content times a certain factor. In this study, we estimated the flux of the portion of the POC originating from phytoplankton production by multiplying the Chl a fluxes by 76.5 (the mean POC:Chl a ratio in the trap samples). These values varied between 308 and 758 mgC m(-2) d(-1), and accounted for 35.1+/-21.2% of total POC flux. Although the amount of POC that originates from phytoplankton photosynthesis was a small portion of total POC flux, it seems to be a large portion of potential primary production in the water column.     

Population dynamics of autotrophic picoplankton in relation to environmental factors in a productive lake

Spatial and seasonal fluctuations in autotrophic picoplankton (APP) abundance in a eutrophic, dimictic lake (Lake Aydat, France) were measured concurrently with a variety of environmental variables. Cell number ranged from 0.03 to 2.36×10⁶ cells·ml^–1 (highest concentrations were >5-fold higher than in oligotrophic lakes) and averaged 24 ± 7% of total picoplankton abundance (APP + heterotrophic bacteria). APP abundance (1) peaked in spring simultaneously with heterotrophic flagellate and ciliate densities, (2) decreased during the nitrogen-limited and summer stratification period, and (3) increased with fall turnover. In summer-autumn, the contribution of single-cell eukaryotic (up to 66%) and colonial prokaryotic (18%) forms to total abundance peaked in the bottom waters. Multivariate regression analyses suggest that >40% variance in APP number changes may be explained by ciliate abundance (at 0–4 m depth-range), heterotrophic flagellate number and oxygen concentration (5–9 m), and ciliate carbon biomass (10–14 m). The model accounting for changes in heterotrophic bacterial abundance (5–9 m) indicates chlorophylla concentration (r ²=58%) and ciliate abundance (r ²=34%) as dominant covariates. The data presented here suggest that micrograzers control APP abundance in Lake Aydat.     

Elemental and isotopic signatures of particulate organic carbon in the Zengjiang River,southern China

Riverine total suspended sediment (TSS) at the lower reach section of the Zengjiang River, a low‐turbidity river in the southern China, was sampled on a 4‐week basis from March 2002 to February 2003. The gross TSS was divided into sedimentary and suspended fractions (SED and SUS) by the sedimentation method. Organic carbon and nitrogen, ¹⁴C and ¹³C were analysed using an elemental analyser and accelerator mass spectrometer respectively. The results show that particulate organic carbon (POC) yield is 0·8 × 10⁶ g km^?2 year^?1 in the Zengjiang River drainage basin, which is about one‐tenth of that in the Zhujiang (Pearl) River drainage basin. The C/N ratio demonstrates that aquatic biomass is the major contributor to POC in the Zengjiang River. The average share of aquatic biomass in the SUS‐fraction POC and SED‐fraction POC is about 88·89% and 62·76% respectively, with a substantial seasonal variation. δ¹³C values of SUS‐fraction POC (?26·56 to ? 22·89‰) is slightly lighter than that of SED‐fraction POC (?25·05 to ? 22·20‰), indicating that the contribution of aquatic biomass to δ¹³C values is more pronounced in the SUS‐fraction POC than in the SED‐fraction POC. The ‘bomb’–¹⁴C signature is not detected in the POC of Zengjiang River, and the contribution from geological organic carbon is very little. Δ¹⁴C values of the SED‐fraction POC vary from ? 44 to ? 223‰, and the Δ¹⁴C values of the SUS‐fraction POC vary from ? 33 to ? 165‰. For most paired samples, the SED‐fraction POC is generally more depleted in ¹⁴C than that of its counterpart SUS‐fraction POC. Compared with other small mountainous rivers, the ¹⁴C enrichment of POC in the Zengjiang River indicates slight drainage basin erosion. Copyright © 2006 John Wiley & Sons, Ltd.     

The significance of transparent exopolymeric particles in the vertical distribution of bacteria and heterotrophic nanoflagellates in Lake Pavin

The abundance, size distribution, and bacterial colonization of Transparent Exopolymeric Particles (TEP) were examined in two consecutive years during the spring diatom development throughout the water column of the deep meromictic Lake Pavin, France. TEP concentrations ranged from 1.9 to 13.4 × 10⁵ particles l⁻¹ and their distribution and size spectra indicated that these particles are the main factor in governing the transport of diatoms to the deep hypolimnion of the lake. The majority of TEP was colonized by bacteria that constituted 0.4–8.9% of total DAPI-stained bacteria. The intensity of bacterial colonization was strongly related to temperature and decreased with particle size. A more important colonization of small particles in the hypolimnion during thermal stratification suggested that bacterial colonisation also increased with the age of the particle. The abundance of heterotrophic nanoflagellates (HNF) was more significantly related to the density of particles than to the density of total bacteria and the intensity of bacterial colonization of TEP. Our results therefore suggest that TEP are a more important factor for HNF development than attached and free bacteria. We conclude that TEP are involved not only in sedimentation processes but also in the dynamics of bacteria and protozoa in freshwater pelagic environments.     

Importance of ciliated protozoa in relation to the bacterial and phytoplanktonic biomass in an oligo-mesotrophic lake,during the spring diatom bloom

The abundance and the biomass of bacterial, phytoplanktonic, and ciliate communities were estimated at different depths during the spring planktonic development in an oligo-mesotrophic lake (the Pavin lake).The bacterial population, which consists mainly of free bacteria (94% of the total bacterial abundance), displays only low cell densities (0.6 to 7 × 10⁵ cells · ml^–1) and represents low biomass values (0.9 to 11.5 µgC·l^–1) The bacteria represent from 0.9 to 23.8% (M = 9.7%) of the microplanktonic biomass (with the exclusion of heterotrophic nanoflagellates, i.e. bacteria + phytoplankton + ciliates, size range 0.2–160 µm). The abundance of the phytoplankton varies between 0.5 and 1.8 × 10⁶ cells·l^–1, and the biomass values between 12 and 118 µC·l^–1. The phytoplankton population constitutes the largest part of the microplanktonic biomass (51.9 to 96.6%, M = 80.6%), and the diatomMelosira italica subsp.subarctica is the largely dominant species of this community. The population of ciliates, essentiallyOligotrichida andScuticociliatida, displays densities between 1.3 and 38.3 × 10³ cells·l^–1 (M = 6.7 × 10³ cells·l^–1), and biomass values vary from 0.10 to 16.30 µgC·l^–1 (M = 6.01 µgC·l^–1). The ciliates constitute thus from 0.1 to 26.4% (M = 9.8%) of the microplanktonic biomass. Whereas the oligotrichs are best represented in the euphotic zone, the small-sized scuticociliates dominate in the hypolimnion. Besides, species having symbionts and considered to be mixotrophic (Strobilidium gyrans, Strombidium viride, Stokesia vernalis) develop preferentially in the epilimnion and constitute more than 50% of the total ciliate biomass.     

Seasonal contribution of living phytoplankton carbon to vertical fluxes in a coastal upwelling system (Ría de Vigo, NW Spain)

The aim of this study is to explore the contribution of living phytoplankton carbon to vertical fluxes in a coastal upwelling system as a key piece to understand the coupling between primary production in the photic layer and the transfer mechanisms of the organic material from the photic zone. Between April 2004 and January 2005, five campaigns were carried out in the Ría de Vigo (NW Iberian Peninsula) covering the most representative oceanographic conditions for this region. Measurements of particulate organic carbon (POC), chlorophyll-a (chl a), phaeopigments (phaeo), and identification of phytoplankton species were performed on the water column samples and on the organic material collected in sediment traps.The POC fluxes measured by the sediment traps presented no seasonal variation along the studied period ranging around a mean annual value of 1085±365 mg m⁻² d⁻¹, in the upper range of the previously reported values for other coastal systems. The fact that higher POC fluxes were registered during autumn and winter, when primary production rates were at their minimum levels points to a dominant contribution of organic carbon from resuspended sediments on the trap collected material. On the contrary, fluxes of living phytoplankton carbon (C_phyto) and chl a clearly presented a seasonal trend with maximum values during summer upwelling (546 mg m⁻² d⁻¹ and 22 mg chl a m⁻² d⁻¹, respectively) and minimum values during winter (22 mg m⁻² d⁻¹ and 0.1 mg chl a m⁻² d⁻¹, respectively). The contribution of C_phyto to the vertical flux of POC ranged between 2% and 49% in response to the pelagic phytoplankton community structure. Higher values of C_phyto fluxes were registered under upwelling conditions which favour the dominance of large chain-forming diatoms (Asterionellopsis glacialis and Detonula pumila) that were rapidly transferred to the sediments. By contrast, C_phyto fluxes decreased during the summer stratification associated with a pelagic phytoplankton community dominated by single-cell diatoms and flagellates. Minimal C_phyto fluxes were observed during the winter mixing conditions, when the presence of the benthic specie Paralia sulcata in the water column also points toward strong sediment resuspension.     

Bacterial and Virus‐Like Particle Abundances in Purged and Unpurged Groundwater Depth Profiles

Bacteria and viruses are ubiquitous in subterranean aquatic habitats. Bacterial abundance is known to vary with depth in aquifers; however, whether viral abundance varies with depth is less well known. Here we use flow cytometry (FCM) to enumerate bacteria and virus‐like particles (VLP) from groundwater depth profiles. Groundwater samples were obtained from a set of nested piezometers from depths of 15, 30, 45, 60, 80, and 90 m and bacteria and VLP abundances were determined in purged aquifer water and unpurged water at each slot depth. Mean bacterial abundance (cells / mL) was not significantly different in unpurged water (3.2 × 10⁵) compared to purged water (1.4 × 10⁵); however, mean VLP abundance (particles / mL) was significantly greater in unpurged water (4.4 × 10⁵) compared to purged water (2.3 × 10⁵). Purged water was used to investigate the aquifer depth profile and bacterial and VLP abundances were observed to vary significantly between depths. The virus‐bacteria ratio was determined and was observed to steadily increase with depth. Overall, our data indicate the dynamic nature of bacterial and viral abundances in subsurface environments which should be considered when designing groundwater microbial sampling methodologies.     

Dissolved inorganic nutrients and organic substrates in the River Warnow (North-Eastern Germany) – Utilisation by bacterioplankton

After 1990, external loads of Central European rivers with inorganic nutrients (nitrogen and phosphorus) and organic material were reduced because of changed environmental laws. However, in the eutrophic lowland River Warnow, North-Eastern Germany, nitrate concentrations remained high with 35–185 μmol l⁻¹ without a significant decrease since 1992. In contrast, phosphate concentrations, varying between 0.3 and 5.2 μmol l⁻¹ during the growth season 2002, decreased significantly over the years. However, its concentrations still exceeded 1 μmol l⁻¹ regularly in the growth seasons. This load led to a substantial accumulation of organic matter additional to high terrestrial inputs. Despite the high organic load, the remineralising bacteria were mainly inactive in River Warnow. Therefore, the composition of the dissolved organic material, especially its bioavailability, were investigated during the growth season 2002 and discussed with other potential controlling factors. River Warnow carried a high load of dissolved organic carbon (14 mg l⁻¹), especially of humic substances (5.5 mg C l⁻¹). Bacterial abundance (12×10⁶ ml⁻¹) as well as production (1.7 μg C l⁻¹ h⁻¹) depended on temperature. During late spring and summer at constantly higher temperatures, bacterial production correlated positively to readily utilisable substrates and to humic compounds. Thus, the bacterial community in River Warnow may be well adapted or contain enough species using the available amino acids and carbohydrates as well as humic matter compounds. However, calculated from protozoan biomass, grazing may control bacterial biomass and perhaps community composition profoundly, what lead to the low percentages of active bacteria.     

Variability in the annual cycle of vertical particulate organic carbon export on Arctic shelves: Contrasting the Laptev Sea,Northern Baffin Bay and the Beaufort Sea

The ongoing regression of sea ice cover is expected to significantly affect the fate of organic carbon over the Arctic continental shelves. Long-term moored sediment traps were deployed in 2005–2006 in the Beaufort Sea, Northern Baffin Bay and the Laptev Sea to compare the annual variability of POC fluxes and to evaluate the factors regulating the annual cycle of carbon export over these continental shelves. Annual POC fluxes at 200 m ranged from 1.6 to 5.9 g C m⁻² yr⁻¹ with the highest export in Northern Baffin Bay and the lowest export over the Mackenzie Shelf in the Beaufort Sea. Each annual cycle exhibited an increase in POC export a few weeks before, during, or immediately following sea ice melt, but showed different patterns over the remainder of the cycle. Enhanced primary production, discharge of the Lena River, and resuspension events contributed to periods of elevated POC export over the Laptev Sea slope. High POC fluxes in Northern Baffin Bay reflected periods of elevated primary production in the North Water polynya. In the Beaufort Sea sediment resuspension contributed to most of the large export events. Our results suggest that the outer shelf of the Laptev Sea will likely sustain the largest increase in POC export in the next few years due to the large reduction in ice cover and the possible increase in the Lena River discharge. The large differences in forcing among the regions investigated reinforce the importance of monitoring POC fluxes in the different oceanographic regimes that characterize the Arctic shelves to assess the response of the Arctic Ocean carbon cycle to interannual variability and climate change.     

Viriobenthos in aquatic sediments: variability in abundance and production and impact on the C-cycle

In the last 15 years viruses have been acknowledged as important components of the benthic microbial community, but our understanding of their role in the functioning of aquatic systems remains poor. Viruses can affect bacterial assemblages and mineralization activities, but the extent of their influence remains unclear. We synthesised available data on viriobenthos dynamics to understand which factors drive the variability in their abundance and production and to quantify their influence on the benthic carbon cycle. Results highlighted a large variability in viral abundance (from 2 × 10⁸ to 7 × 10⁹ virus ml^?1) and production estimates (from 1 × 10⁷ to 5 × 10⁸ virus ml^?1 h^?1) obtained with different techniques. This variability limits the comparability of data across studies and indicates the need to improve protocols and develop standard methods. The dynamics of viruses infecting prokaryotes appeared linked to prokaryotic metabolism, supporting the hypothesis that benthic viruses originate directly in the sediment as a result of infection events rather than sinking from the water column. Sediment characteristics (porosity, temperature, depth) appeared to effect viral production, mostly indirectly by influencing bacterial productivity and abundance, but possibly also interfering with the rate of virus–host encounter. Conversely, trophic status appeared unrelated to viral parameters. Viral contribution to carbon turnover appeared low and unrelated to temperature, water depth, trophic status and salinity. More detailed studies are needed to understand the pelagic contribution to the viriobenthos and the extent to which dissolved organic carbon released by viruses is effectively used by bacteria.     

Currents and sediment transport in the Mississippi Canyon and effects of Hurricane Georges

The temporal variability in currents, temperature, and particulate matter concentration were measured in the Mississippi Canyon axis where the thalweg was 300 m deep from May–July and August–November 1998 using current meters, thermographs, a light-scattering sensor, and sediment traps. Canyon sediments were sampled by coring and observed using an ROV video camera. Currents in the upper Mississippi Canyon generally oscillated up/down canyon with diurnal periodicity and were bottom-intensified. Mean current speed at 3.5 mab was approximately 8 cm s^?1 during both deployments, reaching maximum speeds of over 50 cm s^?1 under normal conditions. Based on current velocities, critical bed shear stress for resuspension of canyon-floor sediments was exceeded about 30% of the time during both deployments. In late September, Hurricane Georges passed 150 km NE of the study site, significantly intensifying current velocities, bed shear stress, resuspension, trap fluxes and temperature fluctuations. As the hurricane passed, maximum current speed reached 68 cm^?s and temperature decreased ～7 °C in less than two hours. Critical bed shear stress for sediment resuspension was exceeded approximately 50% of the time during the five days of hurricane influence. Further evidence for sediment resuspension was the five-fold (and perhaps 70–130 fold) increase in trap fluxes and compositional similarities between canyon surface sediment and material collected by traps.     

Sediment and fluvial particulate carbon flux from an eroding peatland catchment

Erosion and the associated loss of carbon is a major environmental concern in many peatlands and remains difficult to accurately quantify beyond the plot scale. Erosion was measured in an upland blanket peatland catchment (0.017 km²) in northern England using structure-from-motion (SfM) photogrammetry, sediment traps and stream sediment sampling at different spatial scales. A net median topographic change of –27 mm yr^–1 was recorded by SfM over the 12-month monitoring period for the entire surveyed area (598 m²). Within the entire surveyed area there were six nested catchments where both SfM and sediment traps were used to measure erosion. Substantial amounts of peat were captured in sediment traps during summer storm events after two months of dry weather where desiccation of the peat surface occurred. The magnitude of topographic change for the six nested catchments determined by SfM (mean value: 5.3 mm, standard deviation: 5.2 mm) was very different to the areal average derived from sediment traps (mean value: –0.3 mm, standard deviation: 0.1 mm). Thus, direct interpolation of peat erosion from local net topographic change into sediment yield at the catchment outlet appears problematic. Peat loss measured at the hillslope scale was not representative of that at the catchment scale. Stream sediment sampling at the outlet of the research catchment (0.017 km²) suggested that the yields of suspended sediment and particulate organic carbon were 926.3 t km^–2 yr^–1 and 340.9 t km^–2 yr^–1, respectively, with highest losses occurring during the autumn. Both freeze–thaw during winter and desiccation during long periods of dry weather in spring and summer were identified as important peat weathering processes during the study. Such weathering was a key enabler of subsequent fluvial peat loss from the catchment. © 2019 John Wiley & Sons, Ltd.     

Model of particulate organic carbon transport in an agriculturally impacted stream

The present contribution focuses on modeling the total particulate organic carbon (POC) and benthic POC transport from a lowland stream impacted by agricultural land‐use. A mass balance, reach scale model is verified that accounts for water, sediment and POC transport, sediment and POC temporary storage and exchange with the streambed, and production and degradation of carbon pools in the benthos. We found that the POC load is highly variable during individual hydrologic events and is influenced by transport of mixed carbon sources including upland, streambank and benthic POC sources. Benthic POC stocks and transport were found to vary seasonally and annually but are in a state of long‐term equilibrium. Equilibrium is governed by negative feedback mechanisms whereby high POC export due to extreme hydrologic events and high‐frequency hydrologic events reduces benthic POC stocks and inhibits benthic POC growth. Benthic POC accounted for 4 tC y^?1 or 22% of the total annual POC loading in the stream's main stem and 8.9 tC y^?1 or 48% of the POC yield for the entire watershed. These results suggest that further attention should be given to benthic‐derived POC when budgeting stream ecosystem carbon for low‐order stream systems. Copyright © 2012 John Wiley & Sons, Ltd.     

Particulate carbon and nitrogen dynamics in a headwater catchment in Northern Thailand: hysteresis,high yields,and hot spots

Rivers of South and Southeast Asia disgorge large suspended sediment loads, reflecting exceptionally high rates of erosion promoted by natural processes (tectonic and climatic) and anthropogenic (land‐use change) activities that are characteristic of the region. While particulate carbon and nitrogen fluxes have been characterized in some large Asian rivers, less is known about the headwater systems where much sediment and organic material are initially mobilized. This study, conducted in the 74‐km² Mae Sa Experimental Catchment in northern Thailand, shows that the Sa River is an important source for particulate organic carbon (POC) and particulate organic nitrogen (PON) transported to larger river systems and downstream reservoirs. However, the yields during three years of investigation varied greatly: 5.0–22.3 Mg POC km^?2 y^?1 and 0.48–2.02 Mg PON km^?2 y^?1. The 22.3 Mg POC km^?2 y^?1 yield is the highest reported for any river on the Asian continent. Stream samples collected during 12 storms showed that almost 3% of the total suspended solid load is POC 0.7 µm to 2.0 mm in size. This percentage is higher than other values for most large rivers on the continent. Further, we documented a strong pulse hysteretic behaviour in the stream, whereby peak fluxes of POC and PON are often delayed (anticlockwise hysteresis) or accelerated (clockwise hysteresis) relative to stream flow peaks (or are complex), complicating the prediction of storm‐based or annual particulate carbon and nitrogen fluxes. Stream turbidity and total suspended sediment are reasonable proxies for POC and PON concentrations, while stream discharge is not a good predictor variable. Observed C:N ratios for measured particulate samples range from 3 to 83, with the high‐end values likely associated with fresh (non‐decomposed) vegetative material greater than 2 mm in diameter. The C:N ratio (weighted based on three sediment sizes) for 12 events ranges from 7.5 to 15.3. These modest values reflect the relatively low C:N ratios for small size fractions (0.7–0.63 µm) that comprise 50–90% of the TSS load in the events. Overall, organic material <0.63 µm contribute about 75% of the total POC load and 80% of the PON load. The annual C:N ratio for the river is approximately 10–11. Collectively, our findings indicate the occasionally high yields make the Sa River—and potentially other similar headwater rivers—a hot spot for POC and PON transported to downstream water bodies. Complex hysteresis patterns and high year‐to‐year variability hinders our ability to calculate and predict these yields without continuous, automated monitoring of discharge and turbidity. Copyright © 2016 John Wiley & Sons, Ltd.