Early warning indicators for river nutrient and sediment loads in tropical seagrass beds: a benchmark from a near-pristine archipelago in Indonesia

In remote, tropical areas human influences increase, potentially threatening pristine seagrass systems. We aim (i) to provide a bench-mark for a near-pristine seagrass system in an archipelago in East Kalimantan, by quantifying a large spectrum of abiotic and biotic properties in seagrass meadows and (ii) to identify early warning indicators for river sediment and nutrient loading, by comparing the seagrass meadow properties over a gradient with varying river influence. Abiotic properties of water column, pore water and sediment were less suitable indicators for increased sediment and nutrient loading than seagrass properties. Seagrass meadows strongly responded to higher sediment and nutrient loads and proximity to the coast by decreasing seagrass cover, standing stock, number of seagrass species, changing species composition and shifts in tissue contents. Our study confirms that nutrient loads are more important than water nutrient concentrations. We identify seagrass system variables that are suitable indicators for sediment and nutrient loading, also in rapid survey scenarios with once-only measurements.     

Herbicide contamination and the potential impact to seagrass meadows in Hervey Bay, Queensland, Australia

Low concentrations of herbicides (up to 70 ng l(-1)), chiefly diuron (up to 50 ng l(-1)) were detected in surface waters associated with inter-tidal seagrass meadows of Zostera muelleri in Hervey Bay, south-east Queensland, Australia. Diuron and atrazine (up to 1.1 ng g(-1) dry weight of sediment) were detected in the sediments of these seagrass meadows. Concentration of the herbicides diuron, simazine and atrazine increased in surface waters associated with seagrass meadows during moderate river flow events indicating herbicides were washed from the catchment to the marine environment. Maximum herbicide concentration (sum of eight herbicides) in the Mary River during a moderate river flow event was 4260 ng l(-1). No photosynthetic stress was detected in seagrass in this study during low river flow. However, with moderate river flow events, nearshore seagrasses are at risk of being exposed to concentrations of herbicides that are known to inhibit photosynthesis.     

Multiple time scales of alluvial rivers carrying suspended sediment and their implications for mathematical modeling

Flow, sediment transport and bed deformation in alluvial rivers normally exhibit multiple time scales. Enhanced knowledge of the time scales can facilitate better approaches to the understanding of the fluvial processes. Yet prior studies of the time scales are based upon the concept of sediment transport capacity at low concentrations, which however is not generally applicable. This paper presents new formulations of the time scales of fluvial flow, suspended sediment transport and bed deformation, under the framework of shallow water hydrodynamics, non-capacity sediment transport and the theory of characteristics for the hyperbolic governing equations. The time scale of bed deformation in relation to that of flow depth is demonstrated to delimit the applicability region of mathematical river models, and the time scale of suspended sediment transport relative to that of the pertinent flow information is analyzed to address if the concept of sediment transport capacity is applicable. For shallow flows with high sediment concentrations, bed deformation may considerably affect the flow and a fully coupled model is normally required. In contrast, for deep flows at low sediment concentrations, a decoupled model is mostly justified. This pilot study of the time scales delivers a new theoretical basis, on which the interaction between flow, suspended sediment transport and bed deformation can be potentially better characterized.     

The large penumbra: Long-distance effects of artificial beach nourishment on Posidonia oceanica meadows

We used modelling and field approaches to assess the influence of beach nourishment on a relatively distant Posidonia oceanica seagrass meadow in the NW Mediterranean. Both sediment transport models and in situ observations showed that, two years after the nourishment and under wave climates prevalent during the study period, sediment movement was restricted to shallow waters (<7 m), above meadow shallow limit. The only significant impact on seagrass meadows during this period was an increase in fine sediments, associated with vertical rhizome growth rates 1.5–1.7 times higher than normal. However, running the model with data of wave climate over several decades indicates that strong storms able to transfer these sediments much deeper, potentially burying meadows, occur with a return period of about 25 years. Taken together, our results suggest that beach nourishment could result in significant sub-lethal and lethal consequences for seagrasses that may go unnoticed with short-term evaluations.     

Seagrass meadows globally as a coupled social–ecological system: Implications for human wellbeing

Seagrass ecosystems are diminishing worldwide and repeated studies confirm a lack of appreciation for the value of these systems. In order to highlight their value we provide the first discussion of seagrass meadows as a coupled social–ecological system on a global scale. We consider the impact of a declining resource on people, including those for whom seagrass meadows are utilised for income generation and a source of food security through fisheries support. Case studies from across the globe are used to demonstrate the intricate relationship between seagrass meadows and people that highlight the multi-functional role of seagrasses in human wellbeing. While each case underscores unique issues, these examples simultaneously reveal social–ecological coupling that transcends cultural and geographical boundaries. We conclude that understanding seagrass meadows as a coupled social–ecological system is crucial in carving pathways for social and ecological resilience in light of current patterns of local to global environmental change.     

Modelling-based assessment of suspended sediment dynamics in a hypertidal estuarine channel

We investigate the dynamics of suspended sediment transport in a hypertidal estuarine channel which displays a vertically sheared exchange flow. We apply a three-dimensional process-based model coupling hydrodynamics, turbulence and sediment transport to the Dee Estuary, in the north-west region of the UK. The numerical model is used to reproduce observations of suspended sediment and to assess physical processes responsible for the observed suspended sediment concentration patterns. The study period focuses on a calm period during which wave-current interactions can reasonably be neglected. Good agreement between model and observations has been obtained. A series of numerical experiments aim to isolate specific processes and confirm that the suspended sediment dynamics result primarily from advection of a longitudinal gradient in concentration during our study period, combined with resuspension and vertical exchange processes. Horizontal advection of sediment presents a strong semi-diurnal variability, while vertical exchange processes (including time-varying settling as a proxy for flocculation) exhibit a quarter-diurnal variability. Sediment input from the river is found to have very little importance, and spatial gradients in suspended concentration are generated by spatial heterogeneity in bed sediment characteristics and spatial variations in turbulence and bed shear stress.     

Modelling of hydrodynamics and cohesive sediment transport in Tanshui River estuarine system,Taiwan

A laterally averaged two-dimensional numerical model is used to simulate hydrodynamics and cohesive sediment transport in the Tanshui River estuarine system. The model handles tributaries as well as the main stem of the estuarine system. Observed time series of salinity data and tidally averaged salinity distributions have been compared with model results to calibrate the turbulent diffusion coefficients. The overall model verification is achieved with comparisons of residual currents and salinity distribution. The model reproduces the prototype water surface elevation, currents and salinity distributions. Comparisons of the suspended cohesive sediment concentrations calculated by the numerical model and the field data at various stations show good agreement. The validated model is applied to investigate the tidally averaged salinity distributions, residual circulation and suspended sediment concentration under low flow conditions in the Tanshui River estuarine system. The model results show that the limit of salt intrusion in the mainstem estuary is located at Hsin-Hai bridge in Tahan Stream, 26 km from the River mouth under Q75 flow. The null point is located at the head of salt intrusion, using 1 ppt isohaline as an indicator. The tidally averaged sediment concentration distribution exhibits a local maximum around the null point.     

Towards a predictive model to assess the natural position of the Posidonia oceanica seagrass meadows upper limit

The upper portion of the meadows of the protected Mediterranean seagrass Posidonia oceanica occurs in the region of the seafloor mostly affected by surf-related effects. Evaluation of its status is part of monitoring programs, but proper conclusions are difficult to draw due to the lack of definite reference conditions. Comparing the position of the meadow upper limit with the beach morphodynamics (i.e. the distinctive type of beach produced by topography and wave climate) provided evidence that the natural landwards extension of meadows can be predicted. An innovative model was therefore developed in order to locate the region of the seafloor where the meadow upper limit should lie in natural conditions (i.e. those governed only by hydrodynamics, in absence of significant anthropogenic impact). This predictive model was validated in additional sites, which showed perfect agreement between predictions and observations. This makes the model a valuable tool for coastal management.     

Spatial patterns of sub-tidal seagrasses and their tissue nutrients in the Torres Strait,northern Australia: Implications for management

The distribution and nutritional profiles of sub-tidal seagrasses from the Torres Strait were surveyed and mapped across an area of 31,000 km². Benthic sediment composition, water depth, seagrass species type and nutrients were sampled at 168 points selected in a stratified representative pattern. Eleven species of seagrass were present at 56 (33.3%) of the sample points. Halophila spinulosa, Halophila ovalis, Cymodocea serrulata and Syringodium isoetifolium were the most common species and these were nutrient profiled. Sub-tidal seagrass distribution (and associated seagrass nutrient concentrations) was generally confined to northern-central and south-western regions of the survey area (<longitude 142.60), where mean water depth was relatively shallow (approximately 13 m below MSL) and where sediments were comprised primarily muddy sand to gravelly sand. Seagrass nitrogen and starch content, the most important nutrients for marine herbivores, were significantly correlated with species and with the plant component (above or below ground). For all seagrass species, the above-ground component (shoots and leaves) possessed greater nitrogen concentrations than the below-ground component (roots and rhizomes), which possessed greater starch concentrations. S. isoetifolium had the highest total nitrogen concentrations (1.40±0.05% DW). However, it also had higher fibre concentrations (38.2±0.68% DW) relative to the other four species. H. ovalis possessed the highest starch concentrations (2.76±0.12% DW) and highest digestibility (83.24±0.66% DW) as well as the lowest fibre (27.2±0.66% DW). The high relative abundance (found at 55% of the sites that had seagrass) and nutrient quality characteristics of H. ovalis make it an important source of energy to marine herbivores that forage sub-tidally in the Torres Strait. There were two regions in Torres Strait (north-central and south-western) where sub-tidal seagrass meadows were prevalent and of relatively higher nutritional value. This spatial and nutritional information can be used by local agencies to manage and to protect the ecological, economic and cultural values of the sub-tidal seagrass ecosystems and associated fisheries of the Torres Strait.     

Numerical modeling of bedload and suspended load contributions to morphological evolution of the Seine Estuary (France)

This numerical modeling study (i) assesses the influence of the sediment erosion process on the sediment dynamics and subsequent morphological changes of a mixed-sediment environment, the macrotidal Seine estuary, when non-cohesive particles are dominant within bed mixtures (non-cohesive regime), and (ii) investigates respective contributions of bedload and suspended load in these dynamics. A three dimensional (3D) process-based morphodynamic model was set up and run under realistic forcings (including tide, waves, wind, and river discharge) during a 1-year period. Applying erosion homogeneously to bed sediment in the non-cohesive regime, i.e., average erosion parameters in the erosion law (especially the erodibility parameter, E₀), leads to higher resuspension of fine sediment due to the presence of coarser fractions within mixtures, compared to the case of an independent treatment of erosion for each sediment class. This results in more pronounced horizontal sediment flux (two-fold increase for sand, +30% for mud) and erosion/deposition patterns (up to a two-fold increase in erosion over shoals, generally associated with some coarsening of bed sediment). Compared to observed bathymetric changes, more relevant erosion/deposition patterns are derived from the model when independent resuspension fluxes are considered in the non-cohesive regime. These results suggest that this kind of approach may be more relevant when local grain-size distributions become heterogeneous and multimodal for non-cohesive particles. Bedload transport appears to be a non-dominant but significant contributor to the sediment dynamics of the Seine Estuary mouth. The residual bedload flux represents, on average, between 17 and 38% of the suspended sand flux, its contribution generally increasing when bed sediment becomes coarser (can become dominant at specific locations). The average orientation of residual fluxes and erosion/deposition patterns caused by bedload generally follow those resulting from suspended sediment dynamics. Sediment mass budgets cumulated over the simulated year reveal a relative contribution of bedload to total mass budgets around 25% over large erosion areas of shoals, which can even become higher in sedimentation zones. However, bedload-induced dynamics can locally differ from the dynamics related to suspended load, resulting in specific residual transport, erosion/deposition patterns, and changes in seabed nature.     

Watershed and ocean controls of salt marsh extent and resilience

The formation and evolution of tidal platforms are controlled by the feedbacks between hydrodynamics, geomorphology, vegetation, and sediment transport. Previous work mainly addresses dynamics at the scale of individual marsh platforms. Here, we develop a process-based model to investigate salt marsh depositional/erosional dynamics and resilience to environmental change at the scale of tidal basins. We evaluate how inputs of water and sediment from river and ocean sources interact, how losses of sediment to the ocean depend on this interaction, and how erosional/depositional dynamics are coupled to these exchanges. Model experiments consider a wide range of watershed, basin, and oceanic characteristics, represented by river discharge and suspended sediment concentration, basin dimensions, tidal range, and ocean sediment concentration. In some scenarios, the vertical accretion of a tidal flat can be greater than the rate of sea level rise. Under these conditions, vertical depositional dynamics can lead to transitions between tidal flat and salt marsh equilibrium states. This type of transition occurs much more rapidly than transitions occurring through horizontal marsh expansion or retreat. In addition, our analyses reveal that river inputs can affect the existence and extent of marsh/tidal flat equilibria by both directly providing suspended sediment (favoring marshes) and by modulating water exchanges with the ocean, thereby indirectly affecting the ocean sediment input to the system (favoring either marshes or tidal flats depending on the ratio of the river and ocean water inputs and their sediment concentrations). The model proposed has the goal of clarifying the roles of the main dynamic processes at play, rather than of predicting the evolution of a particular tidal system. Our model results most directly reflect micro- and meso-tidal environments but also have implications for macro-tidal settings. The model-based analyses presented extend our theoretical understanding of marsh dynamics to a greater range of intertidal environments. © 2020 John Wiley & Sons, Ltd.     

Productivity,carbon assimilation and intra-annual change in tropical reef platform seagrass communities of the Torres Strait,north-eastern Australia

Detailed data on seagrass distribution, abundance, growth rates and community structure information were collected at Orman Reefs in March 2004 to estimate the above-ground productivity and carbon assimilated by seagrass meadows. Seagrass meadows were re-examined in November 2004 for comparison at the seasonal extremes of seagrass abundance. Ten seagrass species were identified in the meadows on Orman Reefs. Extensive seagrass coverage was found in March (18,700 ha) and November (21,600 ha), with seagrass covering the majority of the intertidal reef-top areas and a large proportion of the subtidal areas examined. There were marked differences in seagrass above-ground biomass, distribution and species composition between the two surveys. Major changes between March and November included a substantial decline in biomass for intertidal meadows and an expansion in area of subtidal meadows. Changes were most likely a result of greater tidal exposure of intertidal meadows prior to November leading to desiccation and temperature-related stress.     

Suspended sediment concentration and the ripple–dune transition

Flume experiments were conducted in order to monitor changes in flow turbulence intensity and suspended sediment concentration at seven stages across the ripple–dune transition and at three different positions above the bed surface. Three‐dimensional velocity measurements were obtained using an acoustic Doppler velocimeter (ADV). Suspended sediment concentration (SSC) was monitored indirectly using ADV signal amplitude. Although limited to time‐averaged parameters, the analysis reveals that SSC varies significantly with stage across the transition and with sampling height. The statistical analysis also reveals an apparent uniformity of suspended sediment concentration with height above the bed in the lower half of the flow depth at the critical stage in the transition from ripples to dunes. This is also the stage at which turbulence intensity is maximized. Statistically significant correlations were also observed between suspended sediment concentrations and root‐mean‐square values of vertical velocity fluctuations. These correlations reflect the various levels of shear‐layer activity and the distinct turbulent flow regions across the transition. Conversely, time‐averaged values of Reynolds shear stress exhibit a very weak relationship with suspended sediment concentrations. Copyright © 2004 John Wiley & Sons, Ltd.     

2DV modelling of sediment transport processes over full-scale ripples in regular asymmetric oscillatory flow

Wave-induced, steep vortex ripples are ubiquitous features in shallow coastal seas and it is therefore important to fully understand and model the sediment transport processes that occur over them. To this end, two two-dimensional vertical (2DV) models have been critically tested against detailed velocity and sediment concentration measurements above mobile ripples in regular asymmetric oscillatory flow. The two models are a k–ω turbulence-closure model and a discrete-vortex, particle-tracking (DVPT) model, while the data are obtained in the Aberdeen oscillatory flow tunnel (AOFT). The models and the data demonstrate that the time-dependent velocity and suspended sediment concentration above the ripple are dominated by the generation of lee-side vortices and their subsequent ejection at flow reversal. The DVPT model predicts the positions and strengths of the vortices reasonably well, but tends to overpredict the velocity close to the ripple surface. The k–ω model, on the other hand, underpredicts the height to which the vortices are lifted, but is better able to predict the velocity close to the bed. In terms of the cycle- and ripple-averaged horizontal velocity, both models are able to reproduce the observed offshore flow close to and below the ripple crest and the DVPT model is able to produce the onshore flow higher up. In the vicinity of the vortices, the DVPT model better represents the concentration (because of its better prediction of vorticity). The k–ω model, on the other hand, better represents the concentration close to the ripple surface and higher up in the flow (because of the better representation of the near-bed flow and background turbulence). The measured and predicted cycle- and ripple-averaged suspended sediment concentrations are in reasonable agreement and demonstrate the expected region of exponential decay. The models are able to reproduce the observed offshore cycle- and ripple-averaged suspended sediment flux from the ripple troughs upwards, and as a result, produce net offshore suspended sediment transport rates that are in reasonable agreement. The net measured offshore suspended transport rate, based on the integration of fluxes, was found to be consistent with the total net offshore transport measured in the tunnel as a whole once the onshore transport resulting from ripple migration was taken into account, as would be expected. This demonstrates the importance of models being able to predict ripple-migration rates. However, at present neither of the models is able to do so.     

THREE-DIMENSIONAL GEO-MORPHOLOGICAL MODELLING OF ESTUARINE WATERS

1 INTRODUCTION Estuaries and coastal zones have been used as means of navigation, disposal of waste material, fishing and many commercial and economic activities over the centuries. One of the most important phenomena in these regions is the suspended sediment transport, which may cause erosion and deposition, and hence changes in the estuarys morphology. In turn, such changes may lead to problems relating to navigation and estuarine management. When the bed boundary of an estuary change…     

Biogeomorphology of the Mediterranean Posidonia oceanica seagrass meadows

Here we review the multiple interactions between the endemic Mediterranean seagrass, Posidonia oceanica, and coastal geomorphologic processes as an outstanding example of biogeomorphology, taking into account recent advances in the field. Seagrass meadows are among the most important elements for the functioning of marine coastal ecosystems, and represent a major focus for research and conservation. Being considered a priority habitat, P. oceanica meadows are protected by several European Union directives and national laws. In this paper we examine: the role of sedimentary features in controlling the development of the meadows; the interplay between P. oceanica leaf litter (i.e. beached necromass) cast ashore and erosional‐depositional processes on the beaches; the interactions between meadows and nearshore hydrodynamics, and; possible linkages between geomorphological features of the seafloor and the architecture of meadows. Finally, we provide perspectives for future research on P. oceanica and other Mediterranean seagrass meadows in a biogeomorphological context with specific reference to climate change. Copyright © 2016 John Wiley & Sons, Ltd.     

Long term sediment transport simulation of the Danube,Sava, and Tisa rivers

The aim of this paper is to evaluate a newly developed one dimensional unsteady flow, sediment transport and bed evolution model for a looped river network through a long term simulation of a real-life scenario. The model was assessed by verifying it for the Danube, Tisa, and Sava rivers in Serbia for a five year time interval. The total length of the modeled domain was 741.94 km from which 486.48 km is the length of the modeled Danube River reach, 132.50 km the modeled section of the Sava and 122.96 km the length of the modeled Tisa River reach. The simulated domain included smaller tributaries such as the Kolubara, Mlava, Nera, Pek, Porecka, Tamis, and Great Morava rivers. Due to the size of the domain that was included in the model, the work also includes extensive research regarding the available measurements, issues with measurement errors, and suggestions on overcoming incomplete measurements by developing different types of correlations. The attained results were analyzed by comparing the simulation results with measured water levels, discharges, and suspended sediment concentrations. The implemented evaluation of the results confirmed the developed model's reliability.     

Prediction of sediment transport in the swash-zone by using a nonlinear wave model

In the present work, the sediment transport rate in the swash zone is estimated using a Boussinesq model coupled with a porous flow model in order to incorporate the infiltration–exfiltration effects. The transport rate is estimated from a modified Meyer–Peter and Müller formula using different values the multiplier C for uprush and backwash to incorporate the observed higher transporting efficiency of the uprush due to the presence of pre-suspended sediment from the bore collapse. Alternatively, the depth-integrated transport equation for suspended sediment is solved. The comparison between model results and experimental data shows that both approaches are able to give satisfactory results.     

The effects of sample scheduling and sample numbers on estimates of the annual fluxes of suspended sediment in fluvial systems

Since the 1970s, there has been both continuing and growing interest in developing accurate estimates of the annual fluvial transport (fluxes and loads) of suspended sediment and sediment‐associated chemical constituents. This study provides an evaluation of the effects of manual sample numbers (from 4 to 12 year^?1) and sample scheduling (random‐based, calendar‐based and hydrology‐based) on the precision, bias and accuracy of annual suspended sediment flux estimates. The evaluation is based on data from selected US Geological Survey daily suspended sediment stations in the USA and covers basins ranging in area from just over 900 km² to nearly 2 million km² and annual suspended sediment fluxes ranging from about 4 Kt year^?1 to about 200 Mt year^?1. The results appear to indicate that there is a scale effect for random‐based and calendar‐based sampling schemes, with larger sample numbers required as basin size decreases. All the sampling schemes evaluated display some level of positive (overestimates) or negative (underestimates) bias. The study further indicates that hydrology‐based sampling schemes are likely to generate the most accurate annual suspended sediment flux estimates with the fewest number of samples, regardless of basin size. This type of scheme seems most appropriate when the determination of suspended sediment concentrations, sediment‐associated chemical concentrations, annual suspended sediment and annual suspended sediment‐associated chemical fluxes only represent a few of the parameters of interest in multidisciplinary, multiparameter monitoring programmes. The results are just as applicable to the calibration of autosamplers/suspended sediment surrogates currently used to measure/estimate suspended sediment concentrations and ultimately, annual suspended sediment fluxes, because manual samples are required to adjust the sample data/measurements generated by these techniques so that they provide depth‐integrated and cross‐sectionally representative data. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.