Carbonate system and CO2 degassing fluxes in the inner estuary of Changjiang (Yangtze) River,China

We examined the carbonate system, mainly the partial pressure of CO₂ (pCO₂), dissolved inorganic carbon (DIC) and total alkalinity (TAlk) in the Changjiang (Yangtze) River Estuary based on four field surveys conducted in Sep.–Oct. 2005, Dec. 2005, Jan. 2006 and Apr. 2006. Together with our reported pCO₂ data collected in Aug.–Sep. 2003, this study provides, for the first time, a full seasonal coverage with regards to CO₂ outgassing fluxes in this world major river–estuarine system. Surface pCO₂ ranged 650–1440 μatm in the upper reach of the Changjiang River Estuary, 1000–4600 μatm in the Huangpujiang River, an urbanized and major tributary of the Changjiang downstream which was characterized by a very high respiration rate, and 200–1000 μatm in the estuarine mixing zone. Both DIC and TAlk overall behaved conservatively during the estuarine mixing, and the seasonal coverage of these carbonate parameters allowed us to estimate the annual DIC export flux from the Changjiang River as ∼ 1.54 × 10¹² mol. The highly polluted Huangpujiang River appeared to have a significant impact on DIC, TAlk and pCO₂ in the lower reaches of the inner estuary. CO₂ emission flux from the main stream of the Changjiang Estuary was at a low level of 15.5–34.2 mol m^− 2 yr^− 1. Including the Huangpujiang River and the adjacent Shanghai inland waters, CO₂ degassing flux from the Changjiang Estuary may have represented only 2.0%–4.6% of the DIC exported from the Changjiang River into the East China Sea.     

Effects of upwelling,tides and biological processes on the inorganic carbon system of a coastal lagoon in Baja California

The role of coastal lagoons and estuaries as sources or sinks of inorganic carbon in upwelling areas has not been fully understood. During the months of May–July, 2005, we studied the dissolved inorganic carbon system in a coastal lagoon of northwestern Mexico during the strongest period of upwelling events. Along the bay, different scenarios were observed for the distributions of pH, dissolved inorganic carbon (DIC) and apparent oxygen utilization (AOU) as a result of different combinations of upwelling intensity and tidal amplitude. DIC concentrations in the outer part of the bay were controlled by mixing processes. At the inner part of the bay DIC was as low as 1800 μmol kg⁻¹, most likely due to high water residence times and seagrass CO₂ uptake. It is estimated that 85% of San Quintín Bay, at the oceanic end, acted as a source of CO₂ to the atmosphere due to the inflow of CO₂-rich upwelled waters from the neighboring ocean with high positive fluxes higher than 30 mmol C m⁻² d⁻¹. In contrast, there was a net uptake of CO₂ and HCO₃⁻ by the seagrass bed Zostera marina in the inner part of the bay, so the pCO₂ in this zone was below the equilibrium value and slightly negative CO₂ fluxes of −6 mmol C m⁻² d⁻¹. Our positive NEP and ΔDIC values indicate that Bahía San Quintín was a net autotrophic system during the upwelling season during 2005.     

Dissolved nutrient balance and net ecosystem metabolism in a Mediterranean-climate coastal lagoon: San Diego Bay

The temporal and spatial variability of dissolved inorganic phosphate (DIP), nitrogen (DIN), carbon (DIC) and dissolved organic carbon (DOC) were studied in order to determine the net ecosystem metabolism (NEM) of San Diego Bay (SDB), a Mediterranean-climate lagoon. A series of four sampling campaigns were carried out during the rainy (January 2000) and the dry (August 2000 and May and September 2001) seasons. During the dry season, temperature, salinity and DIP, DIC and DOC concentrations increased from oceanic values in the outer bay to higher values at the innermost end of the bay. DIP, DIC and DOC concentrations showed a clear offset from conservative mixing implying production of these dissolved materials inside the bay. During the rainy season, DIP and DOC increased to the head, whereas salinity decreased toward the mouth due to land runoff and river discharges. The distributions of DIP and DOC also showed a deviation from conservative mixing in this season, implying a net addition of these dissolved materials during estuarine mixing within the bay. Mass balance calculations showed that SDB consistently exported DIP (2.8–9.8 × 10³ mol P d⁻¹), DIC (263–352 × 10³ mol C d⁻¹) and DOC (198–1233 × 10³ mol C d⁻¹), whereas DIN (5.5–18.2 × 10³ mol N d⁻¹) was exported in all samplings except in May 2001 when it was imported (8.6 × 10³ mol N d⁻¹). The DIP, DIC and DOC export rates along with the strong relationship between DIP, DIC or DOC and salinity suggest that intense tidal mixing plays an important role in controlling their distributions and that SDB is a source of nutrients and DOC to the Southern California Bight. Furthermore, NEM ranged from −8.1 ± 1.8 mmol C m⁻² d⁻¹ in September to −13.5 ± 5.8 mmol C m⁻² d⁻¹ in January, highlighting the heterotrophic character of SDB. In order to explain the net heterotrophy of this system, we postulate that phytoplankton-derived particulate organic matter, stimulated by upwelling processes in the adjacent coastal waters, is transported into the bay, retained and then remineralized within the system. Our results were compared with those reported for the heterotrophic hypersaline coastal lagoons located in the semi-arid coast of California–Baja California, and with those autotrophic hypersaline systems found in the semi-arid areas of Australia. We point out that the balance between autotrophy and heterotrophy in inverse estuaries is dependent on net external inputs of either inorganic nutrients or organic matter as it has been indicated for positive estuaries.     

Influence of allochthonous input on autotrophic–heterotrophic switch-over in shallow waters of a tropical estuary (Cochin Estuary), India

Bacterial productivity (BP) and respiration (BR) were examined in relation to primary productivity (PP) for the first time in a shallow tropical ecosystem (Cochin Estuary), India. The degree of dependence of BP (6.3–199.7 μg C L⁻¹ d⁻¹) and BR (6.6–430.4 μg C L⁻¹ d⁻¹) on PP (2.1–608.0 μg C L⁻¹ d⁻¹) was found to be extremely weak. The BP/PP (0.05–8.5) and PP/BR (0.02–7.9) ratios widely varied in the estuary depending on the season and location. There was a seasonal shift in net pelagic production from autotrophy to heterotrophy due to terrestrial organic matter input through rivers which enhanced the bacterial heterotrophic activity and very high pCO₂ (106–6001 μatm) levels. The heterotrophic zones were characterized by low PP but high bacterial production and respiration leading to oxygen undersaturation and exceptionally high pCO₂. We propose that the CO₂ supersaturation caused by increased bacterial respiration (in excess of PP) was a result of bacterial degradation of allochthonous organic matter. This indicates that sources other than planktonic compartment need to be explored to understand the C-cycling in this estuary. These results are of particular relevance to tropical ecosystems in general, where the bulk of world's river discharges occur.     

A cross-system analysis of sedimentary organic carbon in the mangrove ecosystems of Xuan Thuy National Park, Vietnam

A cross-system analysis of bulk sediment composition, total organic carbon (TOC), atomic C/N ratio, and carbon isotope composition (δ¹³C) in 82 surface sediment samples from natural and planted mangrove forests, bank and bottom of tidal creeks, tidal flat, and the subtidal habitat was conducted to examine the roles of mangroves in sedimentation and organic carbon (OC) accumulation processes, and to characterize sources of sedimentary OC of the mangrove ecosystem of Xuan Thuy National Park, Vietnam. Sediment grain sizes varied widely from 5.4 to 170.2 μm (mean 71.5 μm), with the fine sediment grain size fraction (< 63 μm) ranging from 11 to 99.3% (mean 72.5%). Bulk sediment composition suggested that mangroves play an important role in trapping fine sediments from river outflows and tidal water by the mechanisms of tidal current attenuation by vegetation and the ability of fine roots to bind sediments. The TOC content ranged from 0.08 to 2.18% (mean 0.78%), and was higher within mangrove forests compared to those of banks and bottoms of tidal creeks, tidal flat, and subtidal sediments. The sedimentary δ¹³C ranged from − 27.7 to − 20.4‰ (mean − 24.1‰), and mirrored the trend observed in TOC variation. The TOC and δ¹³C relationship showed that the factors of microbial remineralization and OC sources controlled the TOC pool of mangrove sediments. The comparison of δ¹³C and C/N ratio of sedimentary OC with those of mangrove and marine phytoplankton sources indicated that the sedimentary OC within mangrove forests and the subtidal habitat was mainly composed of mangrove and marine phytoplankton sources, respectively. The application of a simple mixing model showed that the mangrove contribution to sedimentary OC decreased as follows: natural mangrove forest > planted mangrove forest > tidal flat > creek bank > creek bottom > subtidal habitat.     

Influence of allochthonous organic matter on bacterioplankton biomass and activity in a eutrophic,sub-tropical estuary

Heterotrophic bacterial and phytoplankton biomass, production, specific growth rates, and growth efficiencies were studied in the Northern region of the Cananéia–Iguape estuarine system, which has recently experienced an intense eutrophication due to anthropogenic causes. Two surveys were carried out during spring and neap tide periods of the dry season of 2005 and the rainy season of 2006. This region receives large freshwater inputs with organic seston and phosphate concentrations that reach as high as 1.0 mg l⁻¹ and 20.0 μM, respectively. Strong decreasing gradients of seston and dissolved inorganic nutrients were observed from the river/estuary boundary to the estuary/coastal interface. Gradients were also observed in phytoplankton and bacterial production rates. The production rates of phytoplankton were 5.6-fold higher (mean 8.5 μg C l⁻¹ h⁻¹) during the dry season. Primary production rates (PP) positively correlated with salinity and euphotic depth, indicating that phytoplankton productivity was light-limited. On the other hand, bacterial biomass (BB) and production rates (BP) were 1.9- and 3.7-fold higher, respectively, during the rainy season, with mean values of up to 40.4 μg C l⁻¹ and 7.9 μg C l⁻¹ h⁻¹, respectively. Despite such a high BP, bacterial abundance remained <2 × 10⁶ cells ml⁻¹, indicating that bacterial production and removal were coupled. Mean specific growth rates ranged between 0.9 and 5.5 d⁻¹. BP was inversely correlated with salinity and positively correlated with temperature, organic matter, exopolymer particles, and particulate-attached bacteria; this last accounted for as much as 89.6% of the total abundance. During the rainy season, BP was generally much higher than PP, and values of BP/PP > 20 were registered during high freshwater input, suggesting that under these conditions, bacterial activity was predominantly supported by allochthonous inputs of organic carbon. In addition, BB probably represented the main pathway for the synthesis of high-quality (low C:N) biomass that may have been available to the heterotrophic components of the plankton food web, particularly nanoheterotrophs.     

黑潮主流径海域海水中的无机碳及其对东海陆架区的影响

基于2014年5—6月对黑潮主流径及毗邻东海陆架海区的调查,研究了该区域水体中无机碳体系参数(p H、总碱度TAlk、溶解无机碳DIC及DIC/TAlk)的垂直与水平分布,在此基础上定量评估了黑潮输入对东海陆架海区无机碳收支的影响。结果表明,黑潮水体中DIC、TAlk与DIC/TAlk总体而言随水深增加而升高,p H降低,综合体现了浮游植物生产、海-气界面交换、有机物降解及Ca CO3溶解等过程的影响;上升流中心站位无机碳参数均受较深层水体上涌影响,与黑潮主流径其它站位略有不同。东海陆架海区外侧站位表层、30m层无机碳主要受台湾海峡暖流影响,高p H、低DIC/TAlk的黑潮表层水影响区域局限于东南部;而在底层,低p H、高DIC/TAlk的黑潮入侵流离开黑潮主流径向正北方延伸并抬升至钱塘江口附近;上升流对无机碳的影响持续至表层,其携带的黑潮中层水因此也可能进入陆架海区。水量模型估算黑潮水在5—10月间跨域陆架边缘向东海陆架区输入溶解无机碳总计58798.9×109mol,净输入达37382.9×109mol,而东海向外输出的无机碳绝大部分经由对马海峡进入日本海。     

The carbonate system in the East China Sea in winter

Measurements of dissolved inorganic carbon (DIC), pH, total alkalinity (TA), and partial pressure of CO₂ (pCO₂) were conducted at a total of 25 stations along four cross shelf transects in the East China Sea (ECS) in January 2008. Results showed that their distributions in the surface water corresponded well to the general circulation pattern in the ECS. Low DIC and pCO₂ and high pH were found in the warm and saline Kuroshio Current water flowing northeastward along the shelf break, whereas high DIC and pCO₂ and low pH were mainly observed in the cold and less saline China Coastal Current water flowing southward along the coast of Mainland China. Difference between surface water and atmospheric pCO₂ (ΔpCO₂), ranging from ~ 0 to ? 111 μatm, indicated that the entire ECS shelf acted as a CO₂ sink during winter with an average flux of CO₂ of ?13.7 ± 5.7 (mmol C m^? 2 day^? 1), and is consistent with previous studies. However, pCO₂ was negatively correlated with temperature for surface waters lower than 20 °C, in contrast to the positive correlation found in the 1990s. Moreover, the wintertime ΔpCO₂ in the inner shelf near the Changjiang River estuary has appreciably decreased since the early 1990s, suggesting a decline of CO₂ sequestration capacity in this region. However, the actual causes for the observed relationship between these decadal changes and the increased eutrophication over recent decades are worth further study.     

Benthic fluxes in a tropical Estuary and their role in the ecosystem

In-situ measurements of benthic fluxes of oxygen and nutrients were made in the subtidal region of the Mandovi estuary during premonsoon and monsoon seasons to understand the role of sediment–water exchange processes in the estuarine ecosystem. The Mandovi estuary is a shallow, highly dynamic, macrotidal estuary which experiences marine condition in the premonsoon season and nearly fresh water condition in the monsoon season. The benthic flux of nutrients exhibited strong seasonality, being higher in the premonsoon compared to the monsoon season which explains the higher ecosystem productivity in the dry season in spite of negligible riverine nutrient input. NH₄⁺ was the major form of released N comprising 70–100% of DIN flux. The benthic respiration rate varied from −98.91 to −35.13 mmol m⁻² d⁻¹, NH₄⁺ flux from 5.15 to 0.836 mmol m⁻² d⁻¹, NO₃⁻ + NO₂⁻ from 0.06 to −1.06 mmol m⁻² d⁻¹, DIP from 0.12 to 0.23 mmol m⁻² d⁻¹ and SiO₄⁴⁻ from 5.78 to 0.41 mmol m⁻² d⁻¹ between premonsoon to monsoon period. The estuarine sediment acted as a net source of DIN in the premonsoon season, but changed to a net sink in the monsoon season. Variation in salinity seemed to control NH₄⁺ flux considerably. Macrofaunal activities, especially bioturbation, enhanced the fluxes 2–25 times. The estuarine sediment was observed to be a huge reservoir of NH₄⁺, PO₄³⁻ and SiO₄⁴⁻ and acted as a net sink of combined N because of the high rate of benthic denitrification as it could remove 22% of riverine DIN influx thereby protecting the eco system from eutrophication and consequent degradation. The estuarine sediment was responsible for ∼30–50% of the total community respiration in the estuary. The benthic supply of DIN, PO₄³⁻ and SiO₄⁴⁻ can potentially meet 49%, 25% and 55% of algal N, P and Si demand, respectively, in the estuary. Based on these observations we hypothesize that it is mainly benthic NH₄⁺ efflux that sustains high estuarine productivity in the NO₃⁻ depleted dry season.     

Diurnal variation of nitric oxide emission flux from a mangrove wetland in Zhangjiang River Estuary,China

The diurnal variation of nitric oxide (NO) emission fluxes from a Kandelia obovata and Avicennia marina mangrove wetland were studied in the Zhangjiang River Estuary Mangrove National Nature Reserve using a dynamic chamber-based technique and a chemiluminescent analyzer. Results from field experiments show that NO emission from K. obovata and A. marina sampling sites reached maximal values of 1.07 ng N m⁻² s⁻¹ and 1.23 ng N m⁻² s⁻¹, respectively after the night tide. Meanwhile NO emission maintained at a steady lower level in daytime for both wetland sites. In laboratory experiments, NO emission from the mangrove wetland soil samples treated with simulated tides in the darkness exhibited higher values than those in the light, therefore it seems that tides and darkness could increase NO emission from mangrove wetlands, while intensive light, high temperature, and dryness in the daytime decreased NO emission. Compared with K. obovata soil samples, the diurnal average NO emission rate of the A. marina site was significantly higher, which was closely related to relatively higher diurnal average CO₂ emission rate, soil available nitrogen content and soil net nitrification rate of the A. marina site. Moreover, soil samples of the A. marina site were more responsive to simulated tides and the addition of nitrogen than those of the K. obovata site.     

Carbon sources supporting a diverse fish community in a tropical coastal ecosystem (Gazi Bay,Kenya)

Interlinked mangrove–seagrass ecosystems are characteristic features of many tropical coastal areas, where they act as feeding and nursery grounds for a variety of fishes and invertebrates. The autotrophic carbon sources supporting fisheries in Gazi bay (Kenya) were studied in three sites, two located in the tidal creeks flowing through extensive mangrove forests, another site located in the subtidal seagrass meadows, approximately 2.5 km away from the forest. Carbon and nitrogen stable isotope composition of 42 fish species, 2 crustacean species and a range of potential primary food sources (e.g., mangroves, seagrasses and epiphytes, macroalgae) were analysed. There was considerable overlap in the δ¹³C signatures between fish (−16.1 ± 2.1‰), seagrasses (−15.1 ± 3.0‰), seagrass epiphytes (−13.6 ± 3.3‰), and macroalgae (−20.4 ± 3.1‰). Nevertheless, the signatures for most primary producers were sufficiently distinct to indicate that the dominant carbon sources for fish were mainly derived from the seagrass and their associated epiphytic community, and possibly macroalgae. Mangrove-derived organic matter contributes only marginally to the overall fish food web. Carbon supporting these fish communities was derived directly through grazing by herbivorous and some omnivorous fishes, or indirectly through the benthic food web. Fishes from the mangrove creeks had distinctly lower δ¹³C signatures (−16.8 ± 2.0‰) compared to those collected in the adjacent seagrass beds (−14.7 ± 1.7‰). This indicated that these habitats were used as distinct sheltering and feeding zones for the fishes collected, with minimal degree of exchange within the fish communities despite their regular movement pattern.     

Carbon isotopic fractionation in macroalgae from Cádiz Bay (Southern Spain): Comparison with other bio-geographic regions

The ¹³C signature of forty-five macroalgal species from intertidal zones at Cádiz Bay was analysed in order to research the extension of diffusive vs. non-diffusive utilisation of dissolved inorganic carbon (DIC) and to perform a comparison with data published for other bio-geographic regions. The ∂¹³C values ranged from −6.8‰ to −33‰, although the span of variation was different depending on the taxa. Thus, ∂¹³C for Chlorophyta varied from −7‰ (Codium adhaerens) to −29.6‰ (Flabellia petiolata), while all the Phaeophyceae (excepting Padina pavonica with ∂¹³C higher than −10‰) had values between −10‰, and −20‰. The widest variation range was recorded in Rhodophyta, from values above −10‰ (Liagora viscida) to values lower than −30‰ obtained in three species belonging to the subclass Rhodymeniophycidae. Accordingly, the mean ∂¹³C value calculated for red algae (−20.2‰) was significantly lower than that for brown (−15.9‰) and green algae (−15.6‰). Most of the analysed red algae were species inhabiting crevices and the low intertidal fringe which explains that, on average, the shaded-habitat species had a ∂¹³C value lower than those growing fully exposed to sun (i.e. in rockpools or at the upper intertidal zone). The comparison between the capacity for non-diffusive use of DIC (i.e. active or facilitated transport of HCO₃⁻ and/or CO₂) and the ∂¹³C values reveals that values more negative than −30‰ indicate that photosynthesis is dependent on CO₂ diffusive entry, whereas values above this threshold would not indicate necessary the operation of a non-diffusive DIC transport mechanism. Furthermore, external carbonic anhydrase activity (_extCA) and ∂¹³C values were negatively correlated indicating that the higher the dependence of the photosynthesis on the CO₂ supplied from HCO₃⁻ via _extCA, the lower the ∂¹³C in the algal material. The comparison between the ∂¹³C values obtained for the analysed species and those published for species inhabiting other bio-geographic areas (warm-temperate, cold and polar) suggests that globally (at least for the red and brown algae) the non-diffusive entry of DIC is more widely spread among the species from Cádiz Bay than among those of polar regions. If it is assumed that non-diffusive use of DIC implies saturation of photosynthesis at the present-day CO₂ concentration in seawater, our data indicate that the potential impact of the acidification on photosynthesis in the seaweed communities will be different depending on the latitude.     

The cycling and oxidation pathways of organic carbon in a shallow estuary along the Texas Gulf Coast

The cycling and oxidation pathways of organic carbon were investigated at a single shallow water estuarine site in Trinity Bay, Texas, the uppermost lobe of Galveston Bay, during November 2000. Radio-isotopes were used to estimate sediment mixing and accumulation rates, and benthic chamber and pore water measurements were used to determine sediment-water exchange fluxes of oxygen, nutrients and metals, and infer carbon oxidation rates. Using ⁷Be and ²³⁴Th_XS, the sediment-mixing coefficient (D_b) was 4.3 ± 1.8 cm² y⁻¹, a value that lies at the lower limit for marine environments, indicating that mixing was not important in these sediments at this time. Sediment accumulation rates (S_a), estimated using ¹³⁷Cs and ²¹⁰Pb_XS, were 0.16 ± 0.02 g cm⁻² y⁻¹. The supply rate of organic carbon to the sediment-water interface was 30 ± 3.9 mmol C m⁻² d⁻¹, of which ∼10% or 2.9 ± 0.44 mmol C m⁻² d⁻¹was lost from the system through burial below the 1-cm thick surface mixed layer. Measured fluxes of O₂ were 26 ± 3.8 mmol m⁻² d⁻¹ and equated to a carbon oxidation rate of 20 ± 3.3 mmol C m⁻² d⁻¹, which is an upper limit due to the potential for oxidation of additional reduced species. Using organic carbon gradients in the surface mixed layer, carbon oxidation was estimated at 2.6 ± 1.1 mmol C m⁻² d⁻¹. Independent estimates made using pore water concentration gradients of ammonium and C:N stoichiometry, equaled 2.8 ± 0.46 mmol C m⁻² d⁻¹. The flux of DOC out of the sediments (DOC_efflux) was 5.6 ± 1.3 mmol C m⁻² d⁻¹. In general, while mass balance was achieved indicating the sediments were at steady state during this time, changes in environmental conditions within the bay and the surrounding area, mean this conclusion might not always hold. These results show that the majority of carbon oxidation occurred at the sediment-water interface, via O₂ reduction. This likely results from the high frequency of sediment resuspension events combined with the shallow sediment mixing zone, leaving anaerobic oxidants responsible for only ∼10–15% of the carbon oxidized in these sediments.     

Water circulation dynamics, water column nutrients and plankton productivity in a well-flushed tropical bay in Kenya

Water circulation, water column nutrients and plankton productivity were studied in a tropical bay with high rates of water exchange (60% to 90% per tide) and short residence times (3 to 4 h). The water circulation is predominantly affected by the semi-diurnal tides, which cause strong and reversing currents in the mangrove creeks (0.60 m·s⁻¹) and currents of low magnitude in the neighbouring seagrass and coral reef zones (< 0.30 m·s⁻¹). Tidal asymmetry, with relatively stronger ebb than flood flows in the mangrove creeks, promotes the net export of nutrients from the river mouth and of organic matter from the mangroves to the seagrass beds. The main sources of the dissolved inorganic nutrients are two rivers (the Kidogoweni and Mkurumuji) which discharge (up to 17.0 m³·s⁻¹) in the upper and lower regions of the bay. The increased input of nutrients did not cause eutrophic conditions since nutrients were rapidly flushed out of the bay. The mangrove biotope generated small amounts of dissolved nutrients which are likely to be used for primary production within the mangrove zone. The production of nutrients in the mangrove zone was masked by high rates of flushing, such that no appreciable nutrient signal was detected in the dry season when the influence of the rivers diminished. The rates of primary production were low in the mangrove, seagrass, and coral reef biotopes in the dry season. Primary production increased slightly during the rainy season. The level of chlorophyll a in the mangrove biotope increased during ebb tides and decreased during flood tides. The highest zooplankton densities, which could not be related directly to primary production in the water-column, occurred at the seagrass station during the wet season.     

The influence of natural and anthropogenic factors on mangrove dynamics over 60 years: The Somone Estuary, Senegal

Although such ecosystems are fragile, this study shows that the anthropogenic damages inflicted on the mangrove forests of West Africa can be reversed over a relatively short time period if environmental conditions are favorable. The mangrove ecosystem of the microtidal Somone Estuary, Senegal, has undergone extreme changes during the last century. The area occupied by mangrove forest was estimated with a diachronic study by GIS for the period 1946-2006. Between 1946 and 1978, 85% of the area was progressively replaced by unvegetated mudflats in the intertidal zones and by barren area in the supratidal zones. Until 1990, this was mainly a result of traditional wood harvesting. The impact was exacerbated by the closing off of the estuary to the sea (1967-1969 and 1987) and by an extended drought (1970 onwards), which resulted in a lack of renewal of water, hypersalinization and acidification. The main factors controlling mangrove evolution in the Somone ecosystem, however, are anthropogenic. Until 1990, traditional wood cutting (for wood and oyster harvesting) was practiced by the local population. Between 1978 and 1989, a small area occupied by the mangroves was stabilized. Since 1992, a modification of mangrove logging and a new reforestation policy resulted in an exponential increase of mangrove area progressively replacing intertidal mudflats. Such success in the restoration of the ecosystem reforestation is supported by favorable environmental conditions: tidal flooding, groundwater influence, rainfall during the wet season, low net accretion rate of about 0.2-0.3 cm year⁻¹, and a ban on the cutting of mangrove wood. The rate of mangrove loss from 1946 to 1978 was 44,000 m² year⁻¹, but this has been offset by restoration efforts resulting in an increase in mangrove area from 1992 to 2006 of 63,000 m² year⁻¹.     

In vitro simulation of oxic/suboxic diagenesis in an estuarine fluid mud subjected to redox oscillations

Estuarine turbidity maxima (ETMs) are sites of intense mineralisation of land-derived particulate organic matter (OM), which occurs under oxic/suboxic oscillating conditions owing to repetitive sedimentation and resuspension cycles at tidal and neap-spring time scales. To investigate the biogeochemical processes involved in OM mineralisation in ETMs, an experimental set up was developed to simulate in vitro oxic/anoxic oscillations in turbid waters and to follow the short timescale changes in oxygen, carbon, nitrogen, and manganese concentration and speciation. We present here the results of a 27-day experiment (three oxic periods and two anoxic periods) with an estuarine fluid mud from the Gironde estuary. Time courses of chemical species throughout the experiment evidenced the occurrence of four distinct characteristic periods with very different properties. Steady oxic conditions were characterised by oxygen consumption rates between 10 and 40 μmol L⁻¹ h⁻¹, dissolved inorganic carbon (DIC) production of 9–12 μmol L⁻¹ h⁻¹, very low NH₄⁺ and Mn²⁺ concentrations, and constant NO₃⁻ production rates (0.4 - 0.7 μmol L⁻¹ h⁻¹) due to coupled ammonification and nitrification. The beginning of anoxic periods (24 h following oxic to anoxic switches) showed DIC production rates of 2.5–8.6 μmol L⁻¹ h⁻¹ and very fast NO₃⁻ consumption (5.6–6.3 μmol L⁻¹ h⁻¹) and NH₄⁺ production (1.4–1.5 μmol L⁻¹ h⁻¹). The latter rates were positively correlated to NO₃⁻ concentration and were apparently caused by the predominance of denitrification and dissimilatory nitrate reduction to ammonia. Steady anoxic periods were characterised by constant and low NO₃⁻ concentrations and DIC and NH₄⁺ productions of less than 1.3 and 0.1 μmol L⁻¹ h⁻¹, respectively. Mn²⁺ and CH₄ were produced at constant rates (respectively 0.3 and 0.015 μmol L⁻¹ h⁻¹) throughout the whole anoxic periods and in the presence of nitrate. Finally, reoxidation periods (24–36 h following anoxic to oxic switches) showed rapid NH₄⁺ and Mn²⁺ decreases to zero (1.6 and 0.8–2 μmol L⁻¹ h⁻¹, respectively) and very fast NO₃⁻ production (3 μmol L⁻¹ h⁻¹). This NO₃⁻ production, together with marked transient peaks of dissolved organic carbon a few hours after anoxic to oxic switches, suggested that particulate OM mineralisation was enhanced during these transient reoxidation periods. An analysis based on C and N mass balance suggested that redox oscillation on short time scales (day to week) enhanced OM mineralisation relative to both steady oxic and steady anoxic conditions, making ETMs efficient biogeochemical reactors for the mineralisation of refractory terrestrial OM at the land-sea interface.     

The reduction effects of mangrove forest on a tsunami based on field surveys at Pakarang Cape,Thailand and numerical analysis

Using an integrated approach including satellite imagery analysis, field measurements, and numerical modeling, we investigated the damage to mangroves caused by the 2004 Indian Ocean tsunami at Pakarang Cape in Pang Nga Province, Thailand. Comparing pre- and post-tsunami satellite imagery of the study area, we found that approximately 70% of the mangrove forest was destroyed by the tsunami. Based on field observations, we found that the survival rate of mangroves increased with increasing stem diameter. Specifically, we found that 72% of Rhizophora trees with a 25–30 cm stem diameter survived the tsunami impact, whereas only 19% with a 15–20 cm stem diameter survived. We simulated the 2004 Indian Ocean tsunami using the nonlinear shallow-water wave theory to reproduce the tsunami inundation flow and investigated the bending moment acting on the mangrove trees. Results of the numerical model showed that the tsunami inundated areas along the mangrove creeks, and its current velocity reached 5.0 m s⁻¹. Based on the field measurements and numerical results, we proposed a fragility function for mangroves, which is the relationship between the probability of damage and the bending stress caused by the maximum bending moment. We refined the numerical model to include the damage probability of mangrove forests using the obtained fragility function to investigate the tsunami reduction effect of mangrove forest. Under simple numerical conditions related to the mangrove forest, ground level, and incident wave, the model showed that a mangrove forest of Rhizophora sp. with a density of 0.2 trees m⁻² and a stem diameter of 15 cm in a 400 m wide area can reduce the tsunami inundation depth by 30% when the incident wave is assumed to have a 3.0 m inundation depth and a wave period of 30 min at the shoreline. However, 50% of the mangrove forest is destroyed by a 4.5 m tsunami inundation depth, and most of the mangrove forest is destroyed by a tsunami inundation depth greater than 6 m. The reduction effect of tsunami inundation depth decreased when the tsunami inundation depth exceeded 3 m, and was mostly lost when the tsunami inundation depth exceeded 6 m.     

Fish assemblages in Tanzanian mangrove creek systems influenced by solar salt farm constructions

Deforestation of mangrove forests is common occurrence worldwide. We examined fish assemblage composition in three mangrove creek systems in Tanzania (East Africa), including two creeks where the upper parts were partly clear-cut of mangrove forest due to the construction of solar salt farms, and one creek with undisturbed mangrove forest. Fish were caught monthly for one year using a seine net (each haul covering 170 m²) within three locations in each creek, i.e. at the upper, intermediate and lower reaches. Density, biomass and species number of fish were lower in the upper deforested sites compared to the mangrove-fringed sites at the intermediate and lower parts in the two creeks affected by deforestation, whereas there were no differences among the three sites in the undisturbed mangrove creek system. In addition, multivariate analyses showed that the structure of fish assemblages varied between forested and clear-cut sites within the two disturbed creeks, but not within the undisturbed creek. Across the season, we found no significant differences except for a tendency of a minor increase in fish densities during the rainy season. At least 75% of the fishes were juveniles and of commercial interest for coastal fisheries and/or aquaculture. Mugil cephalus, Gerres oyena and Chanos chanos were the most abundant species in the forested sites. The dominant species in the clear-cut areas were M. cephalus and Elops machnata, which were both found in relatively low abundances compared to the undisturbed areas. The conversion of mangrove forests into solar salt farms not only altered fish assemblage composition, but also water and sediment conditions. In comparison with undisturbed areas, the clear-cut sites showed higher salinity, water temperature as well as organic matter and chlorophyll a in the sediments. Our results suggest that mangrove habitat loss and changes in environmental conditions caused by salt farm developments will decrease fish densities, biomass and species numbers as well as alter the overall fish assemblage composition in the salt farm area but not downstream in the creek.     

Comments on: “Underwater measurements of carbon dioxide evolution in marine plant communities: A new method” by J. Silva and R. Santos [Estuarine,Coastal and Shelf Science 78(2008) 827–830]

Silva et al. propose a new method for quantifying benthic net community production (NCP) of tidal flats under submerged condition, based on the monitoring of water pCO₂ in a transparent benthic chamber around high tide. I demonstrate here with theoretical considerations that this method is inappropriate for coastal environments, because it allows only the quantification of the change in the dissolved CO₂ which, at classical seawater pH, is only ∼10% of the change of the dissolved inorganic carbon (DIC). Total Alkalinity and/or DIC must be measured at the beginning and end of incubations in order to compute NCP in coastal environments. However, I also demonstrate that when pH is below 7, more than 95% of the DIC change occurs in the CO₂ pool. The method proposed by Silva et al. is thus valuable for freshwater environments with acidic, low alkalinity waters, where monitoring the water pCO₂ in a vial or chamber provides alone a very close approximation of the planktonic or benthic net community production.     

Export and mesopelagic particle flux during a North Atlantic spring diatom bloom

Spring diatom blooms are important for sequestering atmospheric CO₂ below the permanent thermocline in the form of particulate organic carbon (POC). We measured downward POC flux during a sub-polar North Atlantic spring bloom at 100 m using thorium-234 (²³⁴Th) disequilibria, and below 100 m using neutrally buoyant drifting sediment traps. The cruise followed a Lagrangian float, and a pronounced diatom bloom occurred in a 600 km² area around the float. Particle flux was low during the first three weeks of the bloom, between 10 and 30 mg POC m⁻² d⁻¹. Then, nearly 20 days after the bloom had started, export as diagnosed from ²³⁴Th rose to 360-620 mg POC m⁻² d⁻¹, co-incident with silicate depletion in the surface mixed layer. Sediment traps at 600 and 750 m depth collected 160 and 150 mg POC m⁻² d⁻¹, with a settled volume of particles of 1000-1500 mL m⁻² d⁻¹. This implies that 25-43% of the 100 m POC export sank below 750 m. The sinking particles were ungrazed diatom aggregates that contained transparent exopolymer particles (TEP). We conclude that diatom blooms can lead to substantial particle export that is transferred efficiently through the mesopelagic. We also present an improved method of calibrating the Alcian Blue solution against Gum Xanthan for TEP measurements.