Decadal changes in common reef coral populations and their associations with algal symbionts (Symbiodinium spp.)

Decadal populations changes in four coral taxa and their patterns of association with algal symbionts (Symbiodinium spp. – 10 years of sampling) were examined on Kenyan back reefs over a period of climatic disturbances (1991?2009). Some of the better surviving taxa, Pavona and Pocillopora, were associated with variable temperature regimes and >50% of sampled colonies in these taxa had some of the more thermally tolerant Symbiodinium in clade D. In contrast, only around 35% of Acropora and no branching forms of Porites contained detectable levels of clade D, and both taxa experienced high levels of thermally‐induced mortality and poor recovery. Overall, however the relationship between Symbiodinium clade and population‐level success of coral hosts was not strong, and differential success inside and outside fisheries closures suggests that other factors, such as predation on corals, were also influential. Consequently, while Symbiodinium in clade D may contribute to the success of coral hosts across thermal disturbances, multiple ecological factors and additional biological traits also influence their long‐term survival.     

Spatial distribution of crustaceans associated with shallow soft‐bottom habitats in a coral reef lagoon

The ecology and diversity of the shallow soft‐bottom areas adjacent to coral reefs are still poorly known. To date, the few studies conducted in these habitats dealing with macroinvertebrate fauna have focused on their abundance spatial patterns at high taxonomic levels. Thus, some aspects important to evaluate the importance and vulnerability of these habitats, such as species diversity or the degree of habitat specialization, have often been overlooked. In this study we compared the crustacean assemblages present in four different habitats at Magoodhoo Island coral reef lagoon (Maldives): coral rubble, sandy areas and two different seagrass species (Thalassia hemprichii and Cymodocea sp.). Forty‐two different crustacean species belonging to 30 families and four orders were found. ‘Site’ was a significant factor in all of the statistical analyses, indicating that tropical soft‐bottom habitats can be highly heterogeneous, even at a spatial scale between tens and hundreds of meters. Although traditionally it has been considered that seagrass beds host greater species diversity and abundance of organisms than adjacent unvegetated habitats, no differences in the univariate measures of fauna (abundance of organisms, number of species and Shannon diversity) were observed among habitats. However, sandy areas, coral rubble and seagrass beds exhibited different species composition of crustacean communities. The percentage of taxa considered as potential habitat specialists was 27% and the number of species exclusively occurring in one habitat was especially high in seagrass beds. Thus, degradation of this vegetated habitat would result in a great loss of biodiversity in tropical shallow soft‐bottom habitats.     

Effects of Soft Corals on Scleractinian Coral Recruitment. II: Allelopathy, Spat Survivorship and Reef Community Structure

Abstract. Two field experiments were performed on the Great Barrier Reef, Australia, at Orpheus Island and Lizard Island, respectively, to investigate the effects of allelopathic soft corals on survivorship and community structure of scleractinian coral spat. Ceramic tiles were placed around the allelopathic soft corals Sinularia flexibilis (Quoy & Gaimard 1833) and Sarcophyton glaucum (Quoy & Gaimard 1833), and controls. One control consisted of settlement plates surrounding a scleractinian coral (non‐allelopathic planktivore); another control had no adult soft or scleractinian coral present. The experimental soft corals affected the recruitment of various taxonomic groups of coral spat differentially, as evidenced by the diversity of coral spat settling in treatments and controls. At Orpheus Island (O.I., n = 1038 spat) and Lizard Island (L.I., n = 7032 spat), there were significant differences between recruitment success of the two dominant coral taxa, Pocilloporidae (O.I., 61.4 %; L.I., 20.5 %) and Acroporidae (O.I., 33.7 %; L.I., 53 %). Settlement plates exposed to Sinularia flexibilis at either site had the lowest proportion of acroporid recruits. Diversity indices (Shannon‐Wiener Indices) varied significantly between treatments at both Orpheus and Lizard Islands. This appears to be due to selective inhibition of acroporid spat by Sinularia flexibilis at both sites. Growth of coral spat was higher on settlement plates in the presence of Sarcophyton at Lizard Island. Settlement of most associated epibiota was generally inhibited under these conditions. Coral spat survivorship was highest in the presence of Sinularia at Orpheus ­Island; at Lizard Island, this was the case with the Sarcophyton treatment. Higher survivorship, and in some cases growth, of coral spat near soft corals was apparently due to reduced competition for space between spat and associated epibiota. This hypothesis is supported by the results of a sister experiment where a coating of Sinularia flexibilis extract on settlement tiles significantly decreased fouling by sessile epibiota. Soft corals have an allelopathic effect on recruitment and early development of scleractinian corals and, consequently, on early coral reef community succession.     

Epibiotic assemblages on the pen shell Pinna rudis (Bivalvia,Pinnidae) at Matiota Beach,São Vicente Island,Cabo Verde

The rough pen shell Pinna rudis Linnaeus, 1758 (family Pinnidae), a mollusc with an Atlantic–Mediterranean distribution, is able to live in coarse sandy substrates. Considering its shell structure and ecological characteristics, P. rudis can enhance biodiversity by providing a substrate for settlement on its shell. For this reason, we compared the diversity of benthic taxa around P. rudis shells with the species diversity on P. rudis shells, at Matiota Beach, São Vicente Island, Cabo Verde. We sampled an area of 900 m2 and recorded data in situ to estimate the population size of P. rudis and the epibiotic and benthic community diversity. The average density of P. rudis estimated in the sampled area was 6.6 ind. 100 m–2 and the highest density was found at between 2 and 3 m depth, mostly in biogenic and sandy substrates. The epibiotic species diversity on P. rudis shells was significantly higher than the species diversity in the microhabitat around the shells. The P. rudis shell seems to play an important role in increasing the biodiversity of the ecosystem, with some species found only as epibionts on P. rudis.     

Symbiodinium (internal transcribed spacer 2) diversity in the coral host Agaricia lamarcki (Cnidaria: Scleractinia) between shallow and mesophotic reefs in the Northern Caribbean (20–70 m)

This study investigated differences in Symbiodinium diversity in the scleractinian coral species Agaricia lamarcki between shallow (20–25 m) and mesophotic (50–70 m) depths in the Northern Caribbean. Corals were sampled in each of four shallow sites (20–25 m; n = 18) and three mesophotic sites (50–70 m; n = 18) from Mona Island (Puerto Rico) and the US Virgin Islands during a mesophotic exploratory cruise and from the La Parguera shelf edge, off Southwestern Puerto Rico. Symbiodinium diversity was assessed using internal transcribed spacer 2 sequences clustered into operational taxonomic units (OTUs). Clustering resulted in eight clade C OTUs and one clade D OTU. Of these, there were three common Symbiodinium OTUs consisting of C3 and D1a.N14 in shallow reefs and C11.N4 in mesophotic reefs. Statistical tests (permutational multivariate analysis of variance and analysis of similarity) showed significant differences between clade C Symbiodinium OTUs in A. lamarcki colonies located at shallow and mesophotic depths, indicating symbiont zonation. Symbiodinium diversity in A. lamarcki from the Northern Caribbean is comparable to previous reports in the Southern Caribbean for this species. This is the first report of the thermal tolerant species Symbiodinium trenchii (D1a) in A. lamarcki.     

Predation has no competition: factors influencing space and resource use by echinoids in deep‐sea coral habitats,as evidenced by continuous video transects

Predation and competition are highly influential factors determining space use in foraging animals, and ultimately contribute to the spatial heterogeneity observed within habitats. Here we investigated the influence of competition and predation on space and resource use via continuous video transect observations – a tool that has not previously been employed for this purpose. This study therefore also evaluates video data as a pragmatic tool to study community interactions in the deep sea. Observations were compiled from 15 video transects spanning five submarine canyons in the Bay of Biscay, France. Substrate choice, positioning on the coral, echinoid aggregate size, and the presence/absence of predators (e.g. fish and decapods) as well as competitors (both inter‐ and intra‐specific) were recorded. Two dominant co‐existing echinoid taxa, echinothurids and Cidaris cidaris (3188 total observations), were observed in the study. For the echinothurids, no significant trends were detected in the inter‐ and intra‐specific competition data. For Cidaris cidaris, significant shifts in substrate use were correlated to the presence of inter‐specific competitors (echinothurids), whereby an increase in dead coral substrate usage was observed. Highly significant patterns were detected amongst echinoids near fish and decapod predators. A shift to the base of the coral infra‐structure was correlated to the presence of fish, and fewer individuals were observed in the open areas of the reef and a greater number were found in the mid and top sections of the coral when in the presence of decapods. Aggregates formed irrespective of the presence of predators. Aggregations are likely to form for feeding and reproduction rather than for defensive purposes; and migration along the coral infra‐structure may be a predator‐driven behaviour as echinoids seek refuge from predators. Predation risk might play a stronger – or more detectable – role in structuring echinoid space and resource use in deep‐sea coral habitats. In addition, the study successfully detected patterns in the video data thereby demonstrating its potential usefulness for similar ecological studies on other deep‐dwelling megabenthos.     

Complementary (secondary) metabolites in a soft coral: sex-specific variability, inter-clonal variability, and competition

Sex‐specific interactions involving competition for space between the dioecious alcyonacean soft coral Sarcophyton glaucum and the scleractinian coral Acropora robusta were assessed experimentally on Bald Rock, central region of the Great Barrier Reef. To examine this, plus inter‐clonal responses, one male colony of S. glaucum, known to produce sarcophytoxide as its predominant complementary (secondary) metabolite, was sectioned, producing 10 clones. The same was done for a female colony. These two sets of clones were then relocated to grids and placed in contact with Acropora clones. Relocated and non‐relocated controls were also monitored. High levels of tissue necrosis were observed in the hard coral under contact conditions with both the male and female clones after 20 days. The development of a protective polysaccharide layer in the alcyonacean was also observed. Differences observed in the concentrations of complementary metabolites within the two different S. glaucum colonies were related to sex. Both under competition and non‐competition conditions, females exhibited significantly higher concentrations of sarcophytoxide than males, and this increased with time. Fatty ester concentration was also higher in females than males, varying significantly through time, and falling dramatically just after spawning. Fatty ester concentrations decreased linearly through time in the male clones. When involved in competition for space, females possessed higher concentrations of fatty esters than males, both at the site of contact and in non‐contact sites, again, decreasing after spawning. No significant changes in sarcophytoxide levels were noted in the parental colonies, but such changes were observed in fatty esters, with the female producing higher concentrations until after spawning. The use of these two variates in the form of a ratio (sarcophytoxide concentration:fatty ester concentration) yielded a variable Rho (ρ) which was a more sensitive indicator of biochemical change than either of its components alone. These two sets of compounds appeared to have a negative association through time and varied highly significantly between sexes. The diterpene sarcophytoxide may be considered an allelopathic or stress metabolite, while the lipids act as energy storage metabolites.     

Seasonal and ontogenetic patterns of habitat use in coral reef fish juveniles

We investigated the diversity of patterns of habitat use by juveniles of coral reef fishes according to seasons and at two spatial scales (10–100 m and 1–10 km). We conducted underwater visual censuses in New Caledonia's Lagoon between 1986 and 2001. Co-inertia analyses highlighted the importance of mid-shelf habitats at large spatial scale (1–10 km) and of sandy and vegetated habitats at small spatial scale (10–100 m) for most juveniles. Among all juvenile species, 53% used different habitats across seasons (e.g. Lutjanus fulviflamma and Siganus argenteus) and 39% used different habitats as they grow (e.g. Lethrinus atkinsoni and Scarus ghobban). During their ontogeny, at large and small scales, respectively, 21% and 33% of the species studied showed an increase in the number of habitats used (e.g. L. fulviflamma, L. atkinsoni), 10% and 3% showed a decrease in the number of habitats used (e.g. Amphiprion melanopus, Siganus fuscescens), 23% and 3% showed a drastic change of habitat used (e.g. S. ghobban, Scarus sp.) whereas 46% and 61% showed no change of habitat used (e.g. Lethrinus genivittatus, Ctenochaetus striatus). Changes in habitat use at both small and large spatial scales occurred during the ontogeny of several species (e.g. S. ghobban, Scarus sp.). Results pointed out the different spatial and temporal scales of juvenile habitat use to account for in conservation decisions regarding both assemblage and species-specific levels.     

Ecological assessment to detect imminent change in coral reefs of Admiral Cockburn Land and Sea National Park,Turks and Caicos Islands

Coral reefs of the Turks and Caicos Islands (TCIs) (Caribbean Sea) constitute some of the few pristine coral reef systems in the world and play a crucial role in the islands’ economy because they support rich fisheries catches and tourism development. Ambitious development plans involving increase in fishing and tourism pressures are about to bring changes in coastal zone resources of the TCIs associated with increased sediments and nutrients and reduced predation by herbivorous fish on coral reefs. Understanding change is critical when attempting to protect the resources that these coral reefs support and to adopt proper management strategies. Yet, an environmental assessment program to detect imminent human‐induced changes on the surrounding reefs of the TCIs is lacking. Thus, (i) we obtained baseline data on benthic composition and coral community structure at seven reef sites of representative reefs of the TCIs within the Admiral Cockburn Land and Sea National Park (ACLSNP) of South Caicos Island and (ii) performed a priori statistical power analysis to calculate replication requirements for safely and confidently detecting small (δ = 0.1), medium (δ = 0.3), and large (δ = 0.5) effect sizes for a number of relevant to anticipated changes, univariate, benthic indices and for power β = 0.95. The platforms of the margin reefs studied (9–12 m depth) appeared rather variable regarding benthic composition but quite homogeneous regarding hard coral community structure. Mean percent cover of algal functional groups was 0.1 ± 0.3 (mean ± sd) percent for coralline algae and Halimeda, 0.1 ± 0.6 (mean ± sd) percent for macroalgae, 21.7 ± 33 (mean ± sd) percent for turf algae and 4.8 ± 4.0 (mean ± sd) percent for hard coral cover. The dominant benthic component, however, was carbonate substrate (mean ± sd = 30.4 ± 34.3), thus indicating an accreting reef framework. Mean hard coral density, colony size and recruit density were 5.5 ± 1.8 (mean ± sd) corals per 20‐m line transect, 13.0 ± 2.3 (mean ± sd) cm maximum colony diameter, and 1.3 ± 1.4 (mean ± sd) recruits per square foot, respectively. Due to high natural variance, hard coral colony size and density were practically the most sensitive indices in detecting even small size changes on benthos. Also, the geometric mean of log‐transformed colony size‐frequency distributions of the most abundant hard coral taxa, i.e. Montastrea annularis, Agaricia spp., Siderastrea spp. and Porites asteroides were practically sensitive for the same purpose. We hope that the study will optimize the spatial component of a necessary environmental impact assessment program on coral reefs of the TCIs once the natural spatial variability of the system has been assessed and sensitive, benthic, univariate indices have been identified for representative reference coral reef sites of the TCIs.     

Reefs at the edge: coral community structure around Rapa,southernmost French Polynesia

Rapa (27°36′ S, 144°20′ W) is a small (~40 km²) volcanic island isolated in the Southern Austral Archipelago, where direct anthropogenic stressors are extremely limited. Here, we present the results of the first quantitative survey of coral community structure across habitats and depths around the island. Despite its geographical isolation in the depauperate South Central Pacific, its small size and unfavourable environmental conditions (competition with macroalgae, low sea surface temperatures, reduced reef accretion), the diversity of scleractinian corals at Rapa is particularly high (112 species from 32 genera, including 37 species of Acropora) in comparison to other French Polynesian islands and subtropical Pacific locations. Our results indicate that the abundance (>100 colonies per 10 m² recorded at nine of the 17 sampling stations) and cover (>40% at four stations) of corals are relatively high for a marginal reef location. Strong spatial heterogeneity was found, with high variation in diversity, abundance, cover and community composition among stations. Variation in community composition was related to habitat types, with distinct assemblages among fringing reefs within bays, reef formations at bay entrances, and those on the submerged platform surrounding the island. On the platform, a depth gradient was detected, with generic richness, abundance and cover generally greater at deeper stations (18–20 m depth) compared with medium‐depth (10–12 m) and shallow (1–3 m) stations. A gradient was also recorded along bays, with increasing coral diversity and abundance from the bay heads to the bay entrances. The coral community at Rapa was characterized by the presence of several taxa not found in other French Polynesian archipelagos and the rarity of others that are common and abundant in the Society and the Tuamotu islands. Another distinctive feature of reef communities at Rapa is the high cover and dominance of macroalgae, particularly in the shallower parts of the surrounding platform, which probably explains the lower densities of coral colonies recorded there. These characteristics of the diversity and biogeographical composition of coral assemblages at Rapa provide considerable ecological grounds for its conservation.     

Macrofaunal communities of threatened subtidal maërl seabeds on Tenerife (Canary Islands, north-east Atlantic Ocean) in summer

This study contributes with the first data on physical and taxonomical structure of macrofaunal assemblages of ma¨erl beds from the Canary Islands. Ma¨erl beds and Cymodocea nodosa meadows of the Canary Islands are considered biodiversity hot-spots in terms of taxonomic and functional biodiversity with a broad geographical and depth ranges. The authors have studied the structure of the macrofaunal assemblages on different habitat types (Cymodocea, Caulerpa, sabellid field, garden eel and ma¨erl beds). Samples were taken at a range of depths between 14 and 46 m. Correlations were performed among abiotic variables (granulometry, organic matter, nitrogen and phosphates) and the most abundant taxa. Similarity analysis was performed to explore the patchiness of seabeds at a local scale. Significant differences were found in macrofaunal assemblages among seabed types, with highest abundances and lowest biodiversity in sabellid fields, where the sabellid Bispira viola dominated. The polychaetes Aponuphis bilineata and Chone filicauda and the mollusc Turritella brochii were the most abundant taxa on ma¨erl beds. The mosaic of granulometric conditions would explain the associated macroinfaunal community structure and contribute to the creation of diversity on these relatively well preserved seabeds at a local scale.     

Impact of repetitive thermal anomalies on survival and development of mass reef‐building corals in the Maldives

The distribution of dominant coral genera and their response to the recent sea temperature anomalies in the last three decades are analyzed across reefs of the Maldivian Archipelago, which spans 860 × 120 km in the central Indian Ocean. The Maldives suffered one of the worst coral mortality rates in the Indian Ocean in the 1998 warming event and experienced two sub‐lethal thermal anomalies in 2003 and 2010. The results showed that the Acropora proved an important driver of post‐1998 recovery and has become a major dominant genus in most Maldivian reefs at present. The average coral cover and proportion of acroporids have decreased from south to north and represent correspondently 70.6/59% for the southern atoll, 62/53% for the central atoll and 33/10.3% for the northernmost atoll. Stylophora, Seriatopora and the hydrocoral Millepora were not found and are considered candidates for local extirpation from the Maldives. Higher thermal variability and frequency of thermal stress might lead to the decrease in the abundance of susceptible taxa in the northernmost atoll. No phase‐shift to algae‐dominated reefs was observed in any of the three locations. Factors contributing to coral recovery and acclimatization are discussed.     

Current trends of space occupation by encrusting excavating sponges on Colombian coral reefs

Some sponges of the genus Cliona (Porifera, Hadromerida, Clionidae) simultaneously excavate and encrust calcareous substratum, competing aggressively for illuminated space with corals and other organisms. To interpret current trends of reef space occupation, the patterns of distribution and size of three Caribbean species were examined at San Andrés Island and Islas del Rosario in Colombia. While Cliona aprica was ubiquitous, C. caribbaea (= C. langae) preferred deep and protected reef zones, and C. tenuis shallow and wave‐exposed settings. In contrast to the effect on other excavating sponges, chronic exposure to raw sewage did not significantly increase the abundance of the studied sponges. Substratum occupation/availability ratios showed a positive tendency of the sponges toward certain coral skeletons, and a negative or neutral tendency toward calcareous rock, indicating that establishment may be easier on clean, recently dead coral than on older, heavily incrusted substratum. High relief generally limits sponge size to that of the illuminated portions of the substratum. A generally lower proportion of small individuals than of larger ones indicates currently low recruitment rates and low subsequent mortality. Successful events of higher recruitment seem to have occurred for C. tenuis. These are related to the massive acroporid coral die‐off in the early 1980s and to asexual dispersion during storms, resulting in a current 10% substratum cover. Reefs with high coral mortality were and/or are thus more susceptible to colonization and subsequent space occupation by these sponges, although relief may prevent space monopolization.     

Some observations on phytoplankton species composition,biomass, and productivity in Kenepuru Sound,New Zealand, 1982–83

Phytoplankton species composition, biomass, and rates of primary production were determined at two sites within Kenepuru Sound, New Zealand, in spring, summer, and autumn of 1982–83. Microflagellates and ultraplankton (< 5–10 μm) were numerically very abundant on each occasion and small gymnodinoid nanno‐planktonic (< 10–15 μm) dinoflagellates were likewise always a common component of the populations. The dinoflagellate, Prorocentrum gracile, made a substantial contribution to the total biomass in summer. The diatom community changed from mainly small chain forming species (Chaetoceros spp., Leptocylindricus spp.) in spring to small solitary centric and pennate forms (Nitzchia longissima, Coscinodiscus spp.) in summer, to a diversity of larger taxa (Coscinodiscus concinnus, Eucampia zoodiacus) in autumn. The autotrophic ciliate Mesodinium rubrum was a particularly important member of the autumn photo‐autotrophic assemblage. Both phytoplankton biomass and productivity increased from spring to autumn. In situ rates of primary production ranged from 15 to 1420 mgC m^‐2h^‐1 and chlorophyll a concentrations ranged from 6.9 to 258.5 mgChl a m^‐2. A gross primary production rate, in summer, was estimated at 0.57 gC m^‐2 d^‐1. Phytoplankton production and biomass appeared to be related to dissolved inorganic nutrient concentrations as a result of variations in the freshwater inflow. A tentative comparison between the rates of phytoplankton and cultivated mussel production is made.     

Coral communities and reefs from Guerrero,Southern Mexican Pacific

Corals in the Eastern Pacific extend south from the Gulf of California to Ecuador and oceanic Chile, and west from Colombia to Clipperton Atoll. Nevertheless, large stretches of the Mexican Pacific remain fundamentally unstudied. Therefore, to assess the current conditions of coral communities, a coastal fringe ～300 km long (17°40′ N, 101°39′ W to 16°46′ N, 99°49′ W) was surveyed within the Southern Mexican Pacific, between 2005 and 2009. Fifteen stony coral species were identified at 13 coral communities and six Pocillopora‐dominated fringing reefs, with Pocillopora verrucosa and Pocillopora damicornis the primary contributing taxa. Reef development was identified in embayments or behind rocks or islands that offered shelter from northern and northwestern winds. Observations of Pocillopora effusus, Pocillopora inflata, Porites lobata, Pavona clavus, and Pavona varians expanded the species known geographic ranges by several degrees of latitude, suggesting reef building fauna comprised a mixture of widespread and relatively rare Eastern Pacific corals. Results indicated greater live coral cover in the Ixtapa‐Zihuatanejo area (15–73%) than in the Acapulco localities, which had high algal dominance; the reefs in the latter region exhibited high erosion. Regional differences are likely the result of long‐standing anthropogenic pressures around Acapulco since 1950, when it became an important tourist destination. This paper is the first detailed report of ecologically stressed corals and coral reefs from the state of Guerrero on the Mexican Southern Pacific coast.     

Coral colonization by the encrusting excavating Caribbean sponge Cliona delitrix

The Caribbean sponge Cliona delitrix is among the strongest reef space competitors; it is able to overpower entire coral heads by undermining coral polyps. It has become abundant in reefs exposed to organic pollution, such as San Andrés Island, Colombia, SW Caribbean. Forty‐four sponge‐colonized coral colonies were followed‐up for 13 months to establish the circumstances and the speed at which this sponge advances laterally into live coral tissue and the coral tissue retreats. Cliona delitrix presence and abundance was recorded at seven stations to interpret current reef space and coral species colonization trends. The spread of C. delitrix on a coral colony was preceded by a band of dead coral a few millimeters to several centimeters wide. However, the sponge was directly responsible for coral death only when live coral tissue was within about 2 cm distance; coral death became sponge advance‐independent at greater distances, being indirectly dependent on other conditions that tend to accelerate its retreat. Cliona delitrix advanced fastest into recently killed clean coral calices; however, sponge spread slowed down when these became colonized by algae. The lateral advance of C. delitrix was slower than other Cliona spp. encrusting excavating sponges, probably owing to the greater depth of its excavation into the substratum. Cliona delitrix prefers elevated portions of massive corals, apparently settling on recently dead areas. It currently inhabits 6–9% of colonies in reefs bordering San Andrés. It was found more frequently in Siderastrea siderea (the most abundant local massive coral), which is apparently more susceptible to tissue mortality than other corals. Current massive coral mortality caused by C. delitrix could initially change the relative proportions of coral species and in the long‐term favor foliose and branching corals.     

Deep‐water Corallium rubrum (L., 1758) from the Mediterranean Sea: preliminary genetic characterisation

The precious red coral Corallium rubrum (L., 1758) lives in the Mediterranean Sea and adjacent Eastern Atlantic Ocean on subtidal hard substrates. Corallium rubrum is a long‐lived gorgonian coral that has been commercially harvested since ancient times for its red axial calcitic skeleton and which, at present, is thought to be in decline because of overexploitation. The depth distribution of C. rubrum is known to range from c. 15 to 300 m. Recently, live red coral colonies have been observed in the Strait of Sicily at depths of c. 600–800 m. This record sheds new light on the ecology, biology, biogeography and dispersal mechanism of this species and calls for an evaluation of the genetic divergence occurring among highly fragmented populations. A genetic characterization of the deep‐sea red coral colonies has been done to investigate biological processes affecting dispersal and population resilience, as well as to define the level of isolation/differentiation between shallow‐ and deep‐water populations of the Mediterranean Sea. Deep‐water C. rubrum colonies were collected at two sites (south of Malta and off Linosa Island) during the cruise MARCOS of the R/V Urania. Collected colonies were genotyped using a set of molecular markers differing in their level of polymorphism. Microsatellites have been confirmed to be useful markers for individual genotyping of C. rubrum colonies. ITS‐1 and mtMSH sequences of deep‐water red coral colonies were found to be different from those found in shallow water colonies, suggesting the possible occurrence of genetic isolation among shallow‐ and deep‐water populations. These findings suggest that genetic diversity of red coral over its actual range of depth distribution is shaped by complex interactions among geological, historical, biological and ecological processes.     

Microhabitat type determines the composition of nematode communities associated with sediment-clogged cold-water coral framework in the Porcupine Seabight (NE Atlantic)

The nematofauna associated with a cold-water coral degradation zone in the Porcupine Seabight (NE Atlantic) was investigated. This is the first comprehensive study of nematodes associated with cold-water corals. This research mainly aimed to investigate the influence of microhabitat type on nematode community structure. Three distinct microhabitats for nematodes were distinguished: dead coral fragments, glass sponge skeletons and the underlying sediment. The nematode assemblages associated with these three microhabitats were significantly different from each other. Coral and sponge substrata lie relatively unprotected on the seafloor and are consequently more subjected to strong currents than the underlying sediment. As a result, both large biogenic substrata were characterized by higher abundances of taxa that are less vulnerable and more adapted to physical disturbance, whereas the underlying sediment yielded more slender, sediment-dwelling taxa. Typically epifaunal taxa, such as Epsilonematidae and Draconematidae, were especially abundant on dead coral fragments, where they are thought to feed on the microbial biofilm which covers the coral surface. Several epifaunal genera showed significant preferences for this microhabitat, and Epsilonema (Epsilonematidae) was dominant here. Sponge skeletons are thought to act as efficient sediment traps, resulting in a lower abundance of epifaunal taxa compared to coral fragments. The underlying sediment was dominated by taxa typical for slope sediments. The considerable degree of overlap between the communities of each microhabitat is attributed to sediment infill between the coral branches and sponge spicules. It is assumed that the nematofauna associated with large biogenic substrata is composed of a typical sediment-dwelling background community, supplemented with taxa adapted to an epifaunal life strategy. The extent to which these taxa contribute to the community depends on the type of the substratum. Selective deposit feeders were dominant on sponge skeletons and in the underlying sediment, whereas coral fragments were dominated by epistratum feeders. The presence of a microbial biofilm on the coral fragments is proposed as an explanation for the significant preference of epistratum feeders for this microhabitat. Densities in the underlying sediment were low in comparison with other studies, but biodiversity was higher here than on the coral and sponge fragments, a difference which is attributed to lower disturbance. Nevertheless, the large biogenic substrata provide a microhabitat for rare, epifaunal taxa, and fragments of both substrata within the sediment increase habitat complexity and hence biodiversity.     

基于18S rDNA条形码技术的珊瑚礁区塔形马蹄螺(Tectus pyramis)食性分析

塔形马蹄螺(Tectuspyramis)是一种暖水性较强的海洋贝类,也是一种重要的礁栖生物,研究其自然环境中的食物组成对于认识其生态功能具有重要意义,但由于缺少直接的食物组成信息,对其食性和生态功能定位尚不明确。本研究于2017年春季在南沙珊瑚礁区采集了塔形马蹄螺样品,以18S rDNA可变区(V4)序列为靶标,用高通量测序技术分析了其现场食物组成。共测得41个OTU,分属11个门类,包括节肢动物门(Arthropoda)、子囊菌门(Ascomycota)、担子菌门(Basidiomycota)、丝足虫门(Cercozoa)、刺胞动物门(Cnidaria)、Stramenopiles(不等鞭毛类)、网粘菌门(Labyrinthulomycota)、软体动物门(Mollusca)、多孔动物门(Porifera)、甲藻门(Pyrrophyta)、捕虫霉亚门(Zoopagomycota)。与以往研究不同的是,本研究发现塔形马蹄螺消化道中存在大量沉积物碎屑,其中有孔虫、真菌、后生动物是最重要的类群,占食物序列组成的99.76%,它们主要存在于海洋沉积物、有机碎屑和礁石表生藻类基质(Epilithic algal matrix, EAM)中。研究结果揭示了塔形马蹄螺的食物主要来源于EAM中的小型生物和碎屑以及珊瑚礁石上的有害生物,推测塔形马蹄螺属于沉积物碎屑食性生物,可能在清除珊瑚表面藻类基质、促进珊瑚幼体附着过程中发挥一定的作用,对于维护珊瑚生态系统的健康和稳定具有积极意义。