岩溶区地下水微生物污染特征及来源——以重庆南山老龙洞流域为例

文章选取老龙洞地下河流域10个地下水点采集样品,分析水样中的水化学指标和三种重要微生物指标,以了解城市化进程对老龙洞地下河流域水质的影响,探究该地区微生物污染的主要来源。结合岩溶区独特的水文地质条件,利用粪大肠杆菌（FC）与粪链球菌（FS）比值法,初步分析得到该地区微生物污染程度和污染来源。研究结果表明:（1）老龙洞流域地下水存在严重的微生物污染,地下水总细菌数、大肠菌群远超过国家地下水标准规定,分别是国家地下水标准规定的2.3×102～5.5×104倍、0.8×104～0.9×106倍,粪大肠菌群数量为100～4.38×106 CFU?L-1;（2）4#、6#采样点微生物污染主要来源于温血动物,1#、7#、8#采样点地下水受城市化进程的影响大;（3）微生物污染主要来源于人类粪便,同时SO42-、PO43-、NO3-含量高且与微生物污染相关性密切,说明生活污水引起的次生微生物污染较严重,2#、3#、5#、10#采样点受生活污水和禽畜粪便影响较小,属于单纯的NO3-农业污染型地下水,微生物污染较轻。      

微生物修复石油污染地下水的实验研究

为修复陕北黄土区石油污染地下水,采用优化土著微生物菌群的生物技术,进行了地下水中石油的降解与修复实验研究。在实验装置内加入了1.5%的优化菌群制剂,优化出的菌群初步鉴定主要有:假单胞菌属、微球菌属、放线菌属、真菌类的青霉属和曲霉属等。实验结果显示,在实验装置中人为添加石油含量为182.5 mg/l、862.5 mg/l、1695.0 mg/l时,经过28~37 d的微生物修复,地下水中石油的降解率为27.47%~92.46%,而无菌对照中的石油含量变化在5%以内,说明在无菌条件下地下水中石油降解缓慢。该实验过程验证了微生物修复技术在地下水石油污染修复中的有效性,探索了应用的可行性。     

污水人工快速渗滤系统中氨氧化菌16S rDNA的DGGE分析

为了研究污水人工快速渗滤系统(CRI)中氨氧化菌的空间分布规律以及NH4-N在CRI中的迁移转化机理,从深圳运行中的CRI系统砂层填料中以5~10cm间隔垂直取12个样品,对其氨氧化菌的16SrDNA进行DGGE分析。结果表明,CRI系统中氨氧化菌菌群随着深度的增加先增多后减少,在表层至10cm处氨氧化菌约有4~5种组成,主要由某些以有机氮为降解底物的微生物和进水中被砂粒介质截流吸附的微生物组成;在20~90cm范围内氨氧化菌增加至9种左右,多样性最为丰富,是亚硝化作用发生的主要区域;而在100cm以下的范围,由于NH4-N浓度的降低或系统复氧不足,氨氧化菌迅速减少至5~6种。该研究结果证明了氨氧化菌在快渗池内分布范围的变化对NH4-N去除率的影响,即氨氧化菌在快渗池内分布的越接近中上层,对NH4-N的去除效果越好。关于CRI系统中氨氧化菌的空间分布规律及其与NH4-N去除率关系的认识,为工艺改进和效果提高提供了理论基础。     

Use of molecular approaches in hydrogeological studies: the case of carbonate aquifers in southern Italy

Waterborne pathogens represent a significant health risk in both developed and developing countries with sensitive sub-populations including children, the elderly, neonates, and immune-compromised people, who are particularly susceptible to enteric infections. Annually, approximately 1.8 billion people utilize a faecally contaminated water source, and waterborne diseases are resulting in up to 2.1 million human mortalities globally. Although groundwater has traditionally been considered less susceptible to contamination by enteric pathogens than surface water due to natural attenuation by overlying strata, the degree of microbial removal attributable to soils and aquifers can vary significantly depending on several factors. Thus, accurate assessment of the variable presence and concentration of microbial contaminants, and the relative importance of potentially causative factors affecting contaminant ingress, is critical in order to develop effective source (well) and resource (aquifer) protection strategies. “Traditional” and molecular microbiological study designs, when coupled with hydrogeological, hydrochemical, isotopic, and geophysical methods, have proven useful for analysis of numerous aspects of subsurface microbial dynamics. Accordingly, this overview paper presents the principal microbial techniques currently being employed (1) to predict and identify sources of faecal contamination in groundwater, (2) to elucidate the dynamics of contaminant migration, and (3) to refine knowledge about the hydrogeological characteristics and behaviours of aquifer systems affected by microbial contamination with an emphasis on carbonate aquifers, which represent an important global water supply. Previous investigations carried out in carbonate aquifers in southern Italy are discussed.     

Effects of Heavy Metal Contamination on Microbial Biomass and Community Structure in Soils

Theeco environmentalpollutioncausedbyminingdevelopmentisaworldwideproblem ,whichhasarousedever increasingattentionofscientists.Inadditiontovegetationdestructionanderosionofcultivatedlanddirectlycausedbyminingdevelopment,scientistshaveplacedmorefocusontheenvironmentalproblemsinducedbythereleaseofharmfulsubstances ( particularlyheavymetals) .Especiallyundersurfaceconditions,thepiled upminewastes (minetailings)undergoweatheringundertheactionofaseriesofgeochemicalfactorssuchasthemineralogyofmineta…     

Influence of dissimilatory metal reduction on fate of organic and metal contaminants in the subsurface

Geobacter become dominant members of the microbial community when Fe(III)-reducing conditions develop as the result of organic contamination, or when Fe(III) reduction is artificially stimulated. These results suggest that further understanding of the ecophysiology of Geobacter species would aid in better prediction of the natural attenuation of organic contaminants under anaerobic conditions and in the design of strategies for the bioremediation of subsurface metal contamination. Received, May 1999/Revised, October 1999/Accepted, October 1999     

沉积物和悬浮颗粒物在岩溶水系统污染物衰减与运移中的作用

本文讨论了沉积物和悬浮颗粒物/胶体在岩溶水系统污染物衰减与运移中的作用,介绍了关于瑞士某岩溶水系统内颗粒物与微生物污染间关系的实验结果。该实验场包括一个接纳农田排水的落水洞及与其相连的两个泉,其中一个泉是供水水源地。利用便携式粒子计实时监测泉水中颗粒分布的变化情况,同时对浊度、总有机碳和其它参数进行连续监测;并对水中E型大肠菌群进行了分析。在暴雨过后,观测到了浊度的两种不同表现:即泉排泄量增加时,浊度最初表现为脉状水动力条件下岩溶系统内沉积物的二次运移;几天后观测到的浊度则表明水已从落水洞到了泉口,常常具有高的总有机碳、硝酸盐及E型大肠菌群。颗粒分布分析结果差异更大:早期的浊度是不同粒径颗粒物的混合,而后期的浊度更多是由较细颗粒构成,因为大颗粒物已沉积在落水洞到泉口之间的岩溶系统内。E型大肠菌群与0.9～1.5 μm颗粒物之间具有很好的相关性。因而较细颗粒的相对增加可应用于微生物污染 “早期预报系统”。除了水污染,颗粒分还可以帮助我们研究岩溶环境的其它问题,如土壤侵蚀。      

当地下水邂逅DNA:石油类有机污染及其生物降解

地下水科学与工程研究发展到今日,已经成为一门涉及多个领域的综合性学科。地下水污染的控制和修复研究更需要跨学科的技术和知识支持,而生物修复作为一种高效低耗修复的技术成为环境领域的研究热点。微生物因其自身特性及其对污染的降解主导特征对确定有机物污染场地的永续修复具有重要意义。简要地综述了地下水有机污染及其原位修复、有机污染物和地下环境微生物的交互作用,进一步聚焦生物降解机制、生物修复和细菌研究。在此基础上以某石油污染场地地下水为例,进行了地下水中分离微生物菌株及其降解特征的实验研究。结果表明:放线菌降解效果最好,细菌和真菌次之;两两组合降解效果好于单菌,表明存在协同作用;不同菌株混合降解率较低,表明具有拮抗作用。通过动力学实验得出对TPH的降解符合一级反应动力学方程及其降解速度和降解半衰期。就微生物对有机组分降解而言,烷烃和总石油烃降解规律相似;难降解组分降解率低,后期因烷烃转化使其浓度升高;苯浓度变化不大。微生物活性实验表明:活菌总数和脱氢酶活性与降解率呈正相关变化。运用生理生化及分子生物学方法鉴定得出了具体的菌种。     

基因定量技术在油气勘探中的应用

针对特定功能基因发展起来的油气微生物免培养检测技术,与传统培养法相比具有快速、稳定、特异性高的特点,非常适合工业化测试。在沾化凹陷邵家洼陷陈22井区,对钻孔、剖面以及区域所采集的微生物土壤样品进行检测研究,结果显示,利用基因定量技术检测到的油气微生物异常与油气田有极好的对应关系,证明发展油气微生物分子勘探技术技术具有广阔的远景。     

山东平邑盆地古近系湖相微生物碳酸盐岩形成机理*

微生物碳酸盐岩是当前沉积学的研究热点之一,但关于古近系湖相微生物碳酸盐岩的报道还非常少。为探讨山东平邑盆地古近系官庄组中段湖相微生物碳酸盐岩的形成机理,笔者进行了野外实测以及室内偏光显微镜和扫描电镜观察。研究结果认为：（1）研究区微生物碳酸盐岩主要有核形石、叠层石和凝块石;（2）在核形石、叠层石和凝块石内部均发现了球状微生物化石、席状体和凝块状泥晶等微生物成因的显微组构,表明了它们形成过程中共同的生长、粘结和钙化等微生物作用;（3）微生物作用对环境变化比较敏感,水体较小、变化频繁的湖泊环境,对微生物碳酸盐岩结构和形态的发育有很大影响;核形石、叠层石和凝块石的形成环境大致呈现出水动力依次减弱、陆源碎屑物质依次减少、水深依次加大的规律;（4）提出了研究区微生物碳酸盐岩的成因模式,认为这3种微生物碳酸盐岩正是以微生物活动为共同基础,在不同的环境条件下形成的。     

Temporal variations in the depth-specific hydrochemistry and sewage-related microbiology of an urban sandstone aquifer,Nottingham, United Kingdom

The temporal and spatial characteristics of groundwater recharge in urban environments remain poorly understood. Depth-specific monitoring of groundwater quality in the Triassic Sandstone underlying the city of Nottingham, UK, indicates that contamination results primarily from sewage and atmospheric sources. The temporal and depth-specific characteristics of microbial and inorganic (e.g. nitrate, chloride, sulphate) contamination over the investigation period differ significantly and reflect the contrasting transport characteristics of surface-loaded solutes and particulate microbial species (bacteria and viruses) in the Triassic Sandstone. Differences result from a variety of factors, which include microbial die-off, dilution, and the contaminant-source characteristics. Observations in this study show that low levels of microbial contamination should be expected at depth in fissured sandstone due to aquifer heterogeneities such as fissuring and the occurrence of mudstone bands, though the magnitude of this contamination will vary over time. Furthermore, urban groundwater-protection measures based on solute-transport estimates may not be applicable to microbial contamination. Electronic Publication     

含钾岩石微生物转化的分子机制及其碳汇效应

岩石矿物的微生物风化是地球表层系统最为活跃和普遍发生的地质营力之一。微生物对含钾岩石(以硅酸盐矿物为主)的风化能够释放其中的钾、硅和钙等元素,并在合适的环境条件下促进矿物元素的碳酸化沉淀,这是地表元素地球化学循环的重要环节之一。微生物对岩石的生物转化作用既涉及微生物的生长繁殖和代谢调控,也与元素的迁移转化和次生矿物的演化序列有关,具有重要研究价值。采用矿物学、微生物学和分子生物学等相结合的研究方法,有助于系统地研究微生物促进含钾硅酸盐矿物的风化并耦联碳酸化过程及其分子调控机制。研究证实,在纯培养条件下,微生物风化含钾矿物主要采用酸解、螯合、氧化还原等多种方式的协同作用,并可通过调控相关功能基因的表达来响应缺钾的环境以实现其对含钾矿物的有效风化,显然这有赖于微生物通过长期进化而形成的精细的分子调控机制。在土壤生态环境中,微生物对矿物风化的显著特征是该生态环境中微生物群落协同互作的群体作用效应。微生物碳酸酐酶参与的硅酸盐矿物风化伴随碳酸盐矿物的形成过程可能是个长期被忽视的地表碳增汇过程,对该问题的深入探索有助于进一步理解地质演化历史中微生物对碳素迁移转化的驱动机制。加入含钾硅酸盐矿粉的有机肥已经显示出其在土壤改良、作物生长和增加土壤碳汇等方面的正面应用效果,这为利用硅酸盐矿物的生物风化作用来延缓大气CO₂浓度的持续升高提供了新的思路。介绍了有关微生物对含钾岩石生物转化释放钾素的分子机理及其碳汇效应方面的研究进展,以期抛砖引玉,推动该领域研究的快速发展。     

工艺矿物学近十年的主要进展

我国的工艺矿物学在过去十年中的重大进展主要表现在以下几方面:(1)矿物加工和冶金工艺矿物学的发展与应用;初步建立了矿物-生物浸矿机制和各类微生物冶金的制约因素,为生物选矿和冶金过程中工艺矿物学奠定了新的理论基础.(2)新的分析技术的发展及其应用使工艺矿物学开始从定性走向定量;探测和揭示了微生物在分子水平上与矿物表面相互作用和能量转换.这些研究将有助子了解微生物矿产开采和微生物选矿和冶金的控制因素的机制,为建立一个新的选冶工艺矿物学打下了深厚基础.(3)将矿物的晶体化学,矿物物理学,量子矿物学与工艺矿物学紧密结合,使这门应用学科不仅在选、冶、加工工艺等提取其中的某种有用元素,而且也促进了新兴的矿物材料和技术的发展.总之,在未来新的分析技术发展中,将被更广泛地用于研究矿物质,矿物-水界面和矿物-微生物界面,这不仅在新型的工艺矿物学发展中取得了好的成果,而且在环境矿物学,也有广泛的应用前景.     

铀的微生物成矿作用实验研究进展

阐述了微生物成矿作用的基本概念、近年来铀的微生物成矿作用实验研究进展和研究成果;着重指出关于实验模拟微生物对成矿元素的吸附、迁移和还原富集能力的最新观点和思路,包括铀的微生物成矿作用的可能途径、参与成矿的方式、成矿作用机理及与此相应的实验模拟等,并提出铀的微生物、有机和无机综合成矿机理综合实验模拟的必要性。     

Review: Microbial biocenoses in pristine aquifers and an assessment of investigative methods

The current knowledge of microbial biocenoses (communities) in pristine aquifers is presented in a review, which also discusses their relevance for questions of groundwater protection. Aquifers are heterogeneous on all scales and structured in a variety of habitats. The void spaces in many aquifers are small. The biocenoses are thus predominantly composed of microorganisms and, often, microinvertebrates. Larger voids and macroorganisms occur in karst cavities. Due to the absence of light, the biocenoses depend on chemical energy resources, which are, however, scarce in non-contaminated groundwater. The microorganisms thus show small cell sizes, low population densities and reduced activity; they developed specific strategies to survive oligotrophic conditions. The review also discusses the impact of contamination on the biocenoses, and the potential use of the biocenoses or specific organisms as indicators for groundwater quality, and the limits of this approach. Bacteria are either planktonic or attached to aquifer material, which requires both fluid and solid phase sampling. Most groundwater bacteria are viable but non-culturable. Consequently, cultivation techniques give an incomplete picture of the biocenoses, while methods from molecular microbiology provide genetic fingerprints of the entire community. Different analytical methods are available to count microorganisms, identify species, characterise microbial diversity, and measure activity.     

鄂尔多斯盆地东北部奥陶系马五1+2微生物碳酸盐岩沉积特征及储集意义

基于岩芯、薄片及物性资料,研究鄂尔多斯盆地东北部奥陶系马五₁₊₂微生物岩沉积特征及其油气储集意义。研究区发育有不同规模的由蓝细菌群落构成的微生物碳酸盐岩建造,由叠层石、菌纹层白云岩、蓝细菌凝块岩以及菌黏结颗粒岩构成了藻坪和微生物丘建造。微生物丘纵向上建造规模较小,单旋回厚度一般小于1 m,发育于潮下高能环境,并由花斑状砂屑云岩、蓝细菌凝块岩、菌黏结砂屑云岩、菌纹层白云岩构成了丘基-丘核-丘坪的向上变浅序列,也常与颗粒滩相伴生构成丘滩复合体。其中,发育于丘核部位的蓝细菌凝块岩和菌黏结砂屑云岩中窗格孔和粒间孔发育,表现为中孔低渗特征,可作为盆地东北部的储集岩之一。     

Characterization of the Microbial Dolomite of the Upper Sinian Dengying Formation in the Hanyuan Area of Sichuan Province, China

The algal dolostone of the Upper Sinian Dengying Formation (corresponding to the Ediacaran system) in the Upper Yangtze Platform of China possesses a rich diversity of microorganisms and is an ideal site for the study of ancient microbial dolomite. We focused on algal dolostone and its microbial dolomite in the Hanyuan area of Sichuan Province, China. The macroscopic petrological features, microscopic morphology, texture characteristics of the fossil microorganisms and microbial dolomite, and geochemical characteristics were investigated. We found rich fossil microorganisms and microbial dolomites in the laminated, stromatolithic, uniform and clotted (algal) dolostones. The microorganisms present were mainly body fossils of cyanobacteria (including Renalcis, Girvanella, Nanococcus, and Epiphyton) and their trace fossils (including microbial mats (biofilms), algal traces, and spots). In addition, there was evidence of sulfate-reducing bacteria (SRB), moderately halophilic aerobic bacteria, and red algae. The microbial dolomites presented cryptocrystalline textures under polarizing microscope and nanometer-sized granular (including spherulitic and pene-cubical granular) and (sub) micron-sized sheet-like, irregular, spherical and ovoidal morphologies under scanning electron microscope (SEM). The microbial dolomites were formed by microbially induced mineralization in the intertidal zone and lagoon environments during the depositional and syngenetic stages and microbially influenced mineralization in the supratidal zone environment during the penecontemporaneous stage. The microbial metabolic activities and extracellular polymeric substances (EPS) determined the morphology and element composition of microbial dolomite. During the depositional and syngenetic stages, the metabolic activities of cyanobacteria and SRB were active and EPS, biofilms and microbial mats were well-developed. EPS provided a large number of nucleation sites. Accordingly, many nanometer-sized pene-cubical granular and (sub) micron-sized sheet-like microbial dolomites were formed. During the penecontemporaneous stage, SBR, cyanobacteria, and moderately halophilic aerobic bacteria were inactive. Furthermore, nucleation sites reduced significantly and were derived from both the EPS of surviving microorganisms and un-hydrolyzed EPS from dead microorganisms. Consequently the microbial dolomites present nanometer-sized spherulitic and micron-sized irregular, spherical, and ovoidal morphologies. Overall, the microbial dolomites evolved from nanometer-sized granular (including spherulitic and pene-cubical granular) dolomites to (sub) micron-sized sheet-like, irregular, spherical and ovoidal dolomites, and then to macroscopic laminated, stromatolithic, uniform, and clotted dolostones. These findings reveal the correlation between morphological evolution of microbial dolomite and microbial activities showing the complexity and diversity of mineral (dolomite)-microbe interactions, and providing new insight into microbial biomineralization and microbial dolomite in the Precambrian era.     

本源微生物降解辽河原油的非烃分子结构变化

利用高效本源降解菌在不同时间范围内对辽河油样进行了微生物降解模拟实验,以研究不同降解程度原油分子结构的变化规律。微生物作用前后原油样品做族组分分离及进一步的中性氮化合物和酸性化合物分离,然后对其不同组分进行色谱质谱分析和红外光谱分析。结果表明,辽河油样中的非烃化合物经微生物作用以后,正构一元酸含量随降解时间的增加而增加,且变化幅度逐渐增大;五环三萜类羧酸中C28组分和莫烷酸系列随着降解时间的增加含量上升;轻度的微生物降解作用对咔唑、甲基咔唑、二甲基咔唑等化合物没有明显影响,中等强度降解具有一定的影响;从胶质、沥青质红外光谱图看出,微生物能够降解该原油胶质、沥青质。侧链长度随降解程度增加而变短;芳香环结构抗微生物降解能力强,缩合程度变化不大;而取代基上的烷烃易被微生物氧化,氧化程度随降解程度增加而增加,产生酸类、醚类物质。探讨原油微生物降解中非烃化合物结构及其地球化学特征对石油勘探开发都有重要指导作用。     

森林土壤微生物与植物碳源的磷脂脂肪酸及其单体同位素研究

森林生态系统的土壤微生物群落组成和活性,是影响生物地球化学循环、有机质代谢和土壤质量的关键因素.磷脂脂肪酸(PLFA)是一类可有效表征活体微生物群落结构的生物标志物,而其单体稳定碳同位素(δ13C)水平对土壤微生物植物碳代谢具有独特的指示作用.本次研究以土壤PLFA为对象,分析了我国位处纬度梯度带上(24°N～47°N...     

微生物成因白云石研究进展

"白云岩问题"一直是沉积地质学研究的热点和难点之一,白云岩在我国和世界范围内都是重要的油气储层。因此,深入认识白云岩成因对于碳酸岩油气勘探具有重要参考意义。白云岩成因有多种解释模式,如萨布哈蒸发模式、渗透回流模式、埋藏调节模式、混合水模式、潮汐泵模式等。近几十年来,随着低温白云石研究的不断深入,微生物白云石模式作为一种新的成因模式被提出并不断被完善。本文回顾了微生物成因白云石的研究进展,总结了低温白云石形成的3个动力学障碍(镁离子的高水合能、硫酸根的存在、碳酸根离子的低浓度和低活度),简要介绍了微生物成因白云石模式的建立、微生物成因白云石的生长过程及发育特征,系统分析了微生物在白云石形成过程中的调节作用,指出微生物(如硫酸盐还原菌、古甲烷菌)的存在可以改变溶液中的离子平衡,进而有利地克服白云石形成过程中的动力学障碍,并列举了低温微生物成因白云石的氧同位素指标在古温度恢复和过去气候变化研究中的应用,最后对微生物成因白云石相关研究方向(如多学科交叉、新技术应用等)加以展望。对微生物成因白云石模式的深入认识,将为正确解释"白云岩问题"提供新的途径,也将为石油学家关心的白云岩储层问题提供新的理论基础和研究思路。