Horizontal spatial and temporal distribution patterns of nearshore larval fish assemblages at a temperate rocky shore

There have been no previous studies of the composition of nearshore larval fish assemblages along the coast of Portugal. We aimed to describe the composition and horizontal distribution patterns of larval fish assemblages and their temporal dynamics near a rocky reef at depths shallower than 13 m (inshore) and at two miles (3.70 km) from shore (offshore), as well as along transects perpendicular to the shoreline, from the reef to 10 miles offshore (18.52 km). Samples were taken using 5 min sub-surface trawls at the rocky shore of the Arrábida Marine Park (W Portugal). A total of 1021 larvae were collected, belonging to 61 taxa inshore and to 29 taxa offshore. Along transects, 626 larvae of 52 taxa were collected. Most larvae belonged to coastal species associated with rocky reefs. Total larval abundance and diversity were higher from May to July, which is consistent with the spawning activity of adults. Diversity and total larval abundance decreased significantly with increasing distance from shore, both in the inshore/offshore comparison and in the transects, where this decrease was evident at a very small spatial scale (within the first mile from the reef). Species assemblages differed in the pattern of distribution, with most species clearly associated to the extreme nearshore. The distribution patterns obtained were independent of the spawning mode of species. Results are discussed in the light of the possible physical mechanisms that can potentially act at the Arrábida Marine Park to facilitate larvae retention and the role of larval behaviour.     

Abundance and distribution of ichthyoplankton in the upwelling zone off Oregon during anomalous El Niño conditions

The abundance and distribution patterns of nearshore ichthyoplankton were investigated during a year of anomalously high sea temperatures off Oregon. Samples collected from 2 to 18 km offshore from April through September of 1983 showed increased occurrences and higher abundances of taxa usually found at distances offshore of 37 km in other years. The dominant species collected, comprising more than half of the total larval fish abundance, was the northern anchovy (Engraulis mordax). Larval anchovy have rarely been collected inshore in previous studies. Many of the dominant taxa normally found inshore, especially osmerids, were present in reduced numbers in 1983. Changes in the hydrographic conditions associated with onshore surface drift and reduced summer upwelling during the 1983 El Niño could explain the distributional patterns observed. The warm inshore waters apparently provided a substantial spatial and temporal expansion of the spawning habitat for E. mordax.     

Habitat modification in tidepools by bioeroding sea urchins and implications for fine‐scale community structure

By creating novel habitats, habitat‐modifying species can alter patterns of diversity and abundance in marine communities. Many sea urchins are important habitat modifiers in tropical and temperate systems. By eroding rocky substrata, urchins can create a mosaic of urchin‐sized cavities or pits separated by exposed, often flat surfaces. These microhabitats appear to harbor distinct assemblages of species. We investigated how a temperate rocky intertidal community uses three small‐scale (<100 cm²) microhabitats created by or adjacent to populations of the purple sea urchin (Strongylocentrotus purpuratus): pits occupied by urchins, unoccupied pits, and adjacent flat spaces. In tidepools, flat spaces harbored the highest percent cover of algae and sessile fauna, followed by empty pits and then occupied pits. The Shannon diversity and richness of these sessile taxa were significantly higher in flat spaces and empty pits than in occupied pits. The composition of these primary space holders in the microhabitats also varied. Unlike primary space holders, mobile fauna exhibited higher diversity and richness in empty pits than in flat spaces and occupied pits, although results were not significant. The protective empty pit microhabitat harbored the highest densities of most trophic functional groups. Herbivores, however, were densest in flat spaces, concordant with high algal coverage. These results suggest the habitats created by S. purpuratus in addition to its biological activities alter community structure at spatial scales finer than those typically considered for sea urchins.     

Patterns and drivers of asteroid abundances and assemblages on the continental margin of Atlantic Canada

Although continental shelf and slope environments typically exhibit high epifaunal biomass and have been subjected to increasing fishing pressure, ecological information on assemblages of non‐commercial invertebrate species from subtidal and bathyal areas remains limited. Sea stars (Echinodermata: Asteroidea), which are known to influence communities through their feeding habits, have received less attention than structural taxa such as corals and sponges. To better understand the ecological roles of asteroids on continental shelves, we investigated ~30 species and assessed their distributions and co‐occurrence with other benthic invertebrates on the shelf and slope of Eastern Canada. Using fisheries data and in situ video footage, we compiled a large dataset covering ~600,000 km² that included over 350,000 individual asteroid records (37–2243 m depth). Multivariate analyses revealed geographically distinct asteroid assemblages, with a maximal overall density at 400–500 m and the highest diversity at 500–700 m. The most abundant and densely occurring species was Ctenodiscus crispatus. We found that asteroids associate with corals, sponges, bivalves, and other echinoderms, and that depth and substrate influence these assemblages. We identified species likely to affect coexisting organisms by their burrowing behavior that can disrupt epi‐ and infauna (C. crispatus) and through predation on ecologically important corals (Hippasteria phrygiana). In addition to providing baseline distribution and ecological information for many bathyal asteroid species in the Northwest Atlantic, this work highlights the abundance and diversified roles of asteroids within continental shelf and slope ecosystems.     

Summer larval fish assemblages in the Southern Tyrrhenian Sea (Western Mediterranean Sea)

The purpose of this paper was to study the community structure, in terms of species composition, abundance and spatial distribution, of fish larvae in a wide coastal area of Sicily facing the Southeastern Tyrrhenian Sea, extending for 2300 km² from Cape Cefalù to the west, to Cape Rasocolmo in the east. This study analyses how species are assembled in relation to an inshore–offshore gradient and also how environmental conditions, determined by surface circulation patterns occurring in the Central Mediterranean at the local scale, determine the distribution patterns. Samples from 39 stations were collected using a 60‐cm Bongo net during an ichthyoplanktonic survey carried out in June 2006. In all, 62 taxa, representing 32 families, were identified. Cyclothone braueri (59.6%), Engraulis encrasicolus (9.2%) Lampanyctus crocodilus (4.3%) and Lampanyctus pusillus (4.1%) were the most abundant species. The results showed that the highest abundance value (14830.6 fish larvae per 10 m² sea surface) was observed in the western part of the study area. MDS, SIMPER and CCA analyses revealed well defined groups of stations and assemblages of larvae in accordance with an inshore–offshore gradient. The results of this study could have implications for the management of marine resources because the investigated area has already been identified as a nursery area for many pelagic and coastal fishes and a natural habitat for many species of high commercial interest.     

Combining echo sounding,sediment and biological data to map benthic habitats in a coastal area of the Persian Gulf

Mapping surveys of coastal benthic habitat in Qeshm Island Geopark, Persian Gulf, were conducted using a combination of biological, sedimentological and echo‐sounding data. The survey area covered approximately 233 km² in a depth range of 5–25 m, and the data were acquired from a single beam echo sounder, grab, video and still photography. Sediment and macrofauna samples were collected by grab at 76 stations and subjected to classification and ordination analyses. Two acoustic classes were identified differentiating along the near/offshore axis. Sediment texture was dominated by fine grain sizes, with five distinct sub‐sediment types. In total, 214 macrobenthic taxa were identified, of which polychaetes accounted for 60%. Other dominant groups included young sponges, nematodes, malacostracan crustacean, bivalves, ostracods and ophiuroids. Underwater videos and still photos integrated the macrofaunal and sedimentary data and revealed a range of biogenic sedimentary features such as burrows and tubes. The biological data identified six main biological assemblages showing an inshore/offshore pattern. The macrobenthic abundance did not demonstrate a significant difference with depth, although polychaetes were positively correlated with depth. The highest abundance and species richness were observed at median depths. Species distribution and diversity did not show any correlation with sediment type. A preliminary habitat mapping of the south coast of the Qeshm Island Geopark has been carried out, integrating acoustic, sediment and biological data.     

[已撤稿] 三亚珊瑚礁珊瑚藻种类及其空间特征与环境因子的关系

珊瑚藻是珊瑚礁生态系统中重要的功能性群体。2010年通过水肺潜水分析了三亚珊瑚礁区的珊瑚藻种类组成和丰度, 以及群落空间特征与环境因子的关系。共鉴定出3科10属25种珊瑚藻, 其中珊瑚藻科占优势地位。三亚珊瑚礁区的珊瑚藻优势种分别为叉节藻Amphiroa ephedraea、拟中叶藻Mesophyllum simulans、串胞新角石藻Neogoniolithon fosliei、中叶藻M. mesomorphum、圆锥呼叶藻Pneophyllum conicum、孔石藻Porolithon onkodes和布氏水石藻Hydrolithon boergesenii。基于多元统计的分析结果, 将调查采样站位分为近岸型和离岸型2个主要集群, 其中近岸型的珊瑚藻种类以浊度、沉积速率(0~63μm)和悬浮物耐受种类为主, 离岸型则以光依赖-沉积物敏感种类为主。以珊瑚藻种类组成和丰度为基础的群落相似性分析结果表明, 其空间变异处于显著性水平。生物与非生物变量的相关分析结果表明, 最佳两变量组合(浊度和盐度)显著影响三亚珊瑚礁区2种类型调查站位中的珊瑚藻集合。在同一个研究站位, 因受干扰程度不同, 深水处的珊瑚藻的覆盖率比浅水处高。分析结果表明, 在三亚独特的珊瑚礁区中, 自然或人为的物理干扰因素都对调节珊瑚藻群落结构非常重要。     

Phylogenetic diversity of ribulose-1, 5-bisphosphate carboxylase/oxygenase large subunit genes of bacterioplankton in the East China Sea

Phylogenetic diversity of Form Ⅰ and Form Ⅱ ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO) large subunit (rbcL) genes in the inshore and offshore areas of the East China Sea were investigated. Two new primer sets were designed for amplifying partial sequences of rbcL genes from Proteobacteria. Four rbcL gene clone libraries were constructed by amplification and cloning of approximately 640-800 bp sequences of bacterioplankton populations. The method of screening library by denaturing gradient gel electrophoresis (DGGE) was introduced. The results show that the diversity of Form I is higher in offshore waters with higher salinity and lower productivity, while that of Form II is higher at the inshore station where salinity is lower and productivity is higher. Several clusters of sequences obtained are deeply rooted and show low similarity (60%-78%) to the known rbcL in existing databases. The degree of diversity of rbcL genes is directly related to environmental variables, including temperature, salinity, pH, dissolved oxygen, etc. These results indicate that rbcL gene can be used as an effective indicator for genetic diversity and population variability of bacterioplankton with the ability of carbon dioxide fixation in the sea.     

Relating coral species traits to environmental conditions in the Jakarta Bay/Pulau Seribu reef system, Indonesia

A key question in ecology is how biological traits of species determine their locations within an ecosystem. Identifying associations between species traits and environmental variables can help us to understand the causes of disturbance and predict whether species with given traits will persist under changing environmental conditions. To this end corals and environmental variables were sampled in 20 patch reefs of Pulau Seribu, located to the northwest of Jakarta, Indonesia. RLQ analysis, a multivariate ordination approach was subsequently used to relate species traits (colony shape, colony form, corallite size, reproductive mode and adaptive strategy) to environmental variables (e.g., heavy metal concentration in seawater and sediment, salinity, dissolved oxygen, and the cover of sand, dead coral, algae, sponges and soft corals). Using RLQ analysis, we identified environmental gradients associated with significant variation in species traits. Stress tolerant species with a massive morphology, meandroid shape and large corallites were associated with sites with a high abundance of algae and a relatively high concentration of potentially toxic heavy metals in seawater including Cu and Cd, whereas ruderal species and species with a branching morphology and very small corallites were linked to midshore sites. Competitively dominant species with a laminar or free-living morphology, phaceloid shape, very large corallites and brooding reproductive mode were linked to offshore sites with abundant Ca and Sr in the sediment and a high cover of Halimeda algae and sponges. Results of this study indicate that disturbance has differentially affected the marine environment of the Pulau Seribu system, which in turn interacts with coral species traits to determine local species composition.     

Spatial and temporal patterns in the distribution and abundance of macrozooplankton on the southern North West Shelf, Western Australia

We describe the spatial and temporal dynamics of macrozooplankton on the southern North West Shelf (NWS) of Australia over two consecutive summers (1997/1998 and 1998/1999). Sampling was conducted using submersible light traps, deployed at the surface and at depth, along one cross-shelf transect in 1997/1998, and along two cross-shelf transects and one long-shore transect in 1998/1999. Our results revealed large inter-annual changes in macrozooplankton assemblages during the two summers. An upwelling regime associated with El Niño conditions prevailed during the first summer, resulting in high chlorophyll concentrations and an abundance of both meso- and macrozooplankton. During this time, there were distinct inshore and offshore macrozooplankton assemblages that reflected an abrupt transition from upwelling-enriched shelf waters to oligotrophic oceanic waters. In contrast, the second summer was characterised by a downwelling regime associated with La Niña conditions that resulted in low chlorophyll concentrations and decreased abundances of meso- and macrozooplankton. The lack of upwelling activity weakened horizontal gradients in macrozooplankton assemblages so that differences between surface and deep assemblages were more pronounced. Catches in light traps were dominated by hyperiid amphipods during the first summer and by the neritic euphausiid Pseudeuphausia latifrons during the second. There was little within-season change in macrozooplankton assemblages during both summers, and only weak relationships were found between the environmental parameters and the distribution of individual macrozooplankton taxa.     

Spatio‐temporal dynamics of the surf‐zone faunal assemblages at a Southern Oregon sandy beach

Sandy beach/surf‐zone ecosystems are unique environments that, despite the harsh and highly variable hydrodynamic conditions, present a diverse and heterogeneous fauna. However, the dynamics of these ecosystems are currently poorly understood. In this study we tested the hypothesis that surf‐zone assemblages vary with temporal factors such as time of day, tide and tidal height. To test this hypothesis, the surf‐zone community of Bastendorff, a Southern Oregon sandy beach was sampled during the summer of 2006. Samples were collected to (i) describe the smaller, benthic and larger swimming assemblages, (ii) determine whether assemblage compositions, densities, species richness and diversity vary with time of day, tide and tidal height, (iii) explore potential reasons for the variation by correlating environmental factors to the assemblages, and (iv) identify particular species that most strongly exhibit these variations. A hyperbenthic sledge, a sediment corer and a beach seine were used to collect the smaller swimming, benthic and larger swimming fauna, respectively. Sampling occurred during day and night, spring and neap tide, and high, mid and low tide. A total of 76,743 individuals belonging to 105 species were collected. Ninety‐one invertebrate (72,904 individuals), 15 invertebrates (2234 individuals), and 19 invertebrate and vertebrate species (1605 individuals) were collected with the sledge, corer and seine, respectively. Nine species of fish were caught, 98% of which were juveniles. The smaller and larger swimming assemblages varied most strongly with the time of day, suggesting certain species will actively move to the shallow surf‐zone at night. The three assemblages also varied with the tide, potentially due to the larger waves and higher abundance of detached macrophytes observed during spring tides when compared to neap tides, which could push individuals into the surf zone. The benthic assemblage most strongly varied with tidal height and sand grain size, confirming the presence of different faunal zones within Oregon sandy beaches. Finally, several variables of the swimming assemblages varied with temperature and salinity, suggesting that downwelling favorable conditions may have transported species close to shore. Bastendorff presents a complex and diverse surf‐zone community that appears to be influenced by diel species movements, environmental variables such as wave height and abundance of detached macrophytes, and regional oceanographic conditions.     

Impact of oil-based drill mud disposal on benthic foraminiferal assemblages on the continental margin off Angola

In order to assess the possible environmental impact of oily cuttings discharged during oil exploration activities, we studied the benthic foraminiferal faunas in a five-station, 4-km-long sampling transect around a cuttings disposal site at about 670 m depth offshore Angola (W Africa), where drilling activities started 1.5 years before sampling. Living (Rose Bengal stained) and dead foraminiferal faunas were sampled in March 2006. The faunal patterns mirror the spatial distribution of hydrocarbons, which are dispersed into a southeastern direction. Four different areas can be distinguished on the basis of the investigated faunal parameters (density, diversity and species composition of the living fauna, and comparison with subrecent dead faunas). The fauna at station S31, 300 m SE of the oil cuttings disposal site, appears to be clearly impacted: the faunal density and diversity are maximal, but evenness is minimal. Taxa sensitive to organic enrichment, such as Uvigerina peregrina, Cancris auriculus and Cribrostomoides subglobosus, have largely disappeared, whereas the low-oxygen-resistant taxon Chilostomella oolina and opportunistic buliminids and bolivinids attain relatively high densities. At station S32, 500 m SE of the disposal site, environmental impact is still perceptible. The faunal density is slightly increased, and U. peregrina, apparently the most sensitive species, is still almost absent. The faunas found at 1 and 1.8 km SE of the disposal site are apparently no longer impacted by the drill mud disposal. Faunal density and diversity are low, and the faunal composition is typical for a mesotrophic to eutrophic upper slope environment. Finally, Station S35, 2 km NW of the disposal site, contains an intermediate fauna, where both the low-oxygen-resistant C. oolina and the more sensitive taxa (U. peregrina, C. auriculus and C. subglobosus) are present. All taxa live close to the sediment–water interface here, indicating a reduced oxygen penetration into the sediment. Since the hydrocarbon concentration is low at this station, it appears that the faunal characteristics are the consequence of a slightly different environmental setting, and not due to a contamination with drill cuttings. Our data underline the large potential of benthic foraminifera as bio-indicators of anthropogenic enrichment in open marine settings, such as caused by the disposal of oily drill cuttings. The foraminiferal faunas react essentially by a density increase of a number of tolerant and/or opportunistic taxa, and a progressive disappearance of more sensitive taxa in the most impacted area. Rather surprisingly, large-sized taxa appear to be more sensitive than small-sized foraminiferal taxa.     

Explaining island‐wide geographical patterns of Caribbean fish diversity: A multi‐scale seascape ecology approach

Geographical patterning of fish diversity across coral reef seascapes is driven by many interacting environmental variables operating at multiple spatial scales. Identifying suites of variables that explain spatial patterns of fish diversity is central to ecology and informs prioritization in marine conservation, particularly where protection of the highest biodiversity coral reefs is a primary goal. However, the relative importance of conventional within‐patch variables versus the spatial patterning of the surrounding seascape is still unclear in the ecology of fishes on coral reefs. A multi‐scale seascape approach derived from landscape ecology was applied to quantify and examine the explanatory roles of a wide range of variables at different spatial scales including: (i) within‐patch structural attributes from field data (5 × 1 m² sample unit area); (ii) geometry of the seascape from sea‐floor maps (10–50 m radius seascape units); and wave exposure from a hydrodynamic model (240 m resolution) for 251 coral reef survey sites in the US Virgin Islands. Non‐parametric statistical learning techniques using single classification and regression trees (CART) and ensembles of boosted regression trees (TreeNet) were used to: (i) model interactions; and (ii) identify the most influential environmental predictors from multiple data types (diver surveys, terrain models, habitat maps) across multiple spatial scales (1–196,350 m²). Classifying the continuous response variables into a binary category and instead predicting the presence and absence of fish species richness hotspots (top 10% richness) increased the predictive performance of the models. The best CART model predicted fish richness hotspots with 80% accuracy. The statistical interaction between abundance of living scleractinian corals measured by SCUBA divers within 1 m² quadrats and the topographical complexity of the surrounding sea‐floor terrain (150 m radius seascape unit) measured from a high‐resolution terrain model best explained geographical patterns in fish richness hotspots. The comparatively poor performance of models predicting continuous variability in fish diversity across the seascape could be a result of a decoupling of the diversity‐environment relationship owing to structural degradation leading to a widespread homogenization of coral reef structure.     

春季长江口外海底层鱼类群聚特征及其与环境因子的关系

为了研究春季长江口外海底层鱼类群聚特征及其与环境因子的关系,我们根据2015年5月长江口外海底层鱼类的调查资料,使用聚类分析(Cluster)、非参数多维标度排序(NMDS)、相似性分析(ANOSIM)、相似性百分比分析(SIMPER)以及典型对应分析(CCA)等方法对资料进行分析。本研究共记录底层鱼类58种,其中鲈形目种类数最多(21种),鲽形目次之。六丝钝尾虾虎鱼(Amblychaeturichthys hexanema)是优势种。底层鱼类可以划分为3个群组—近海组、南部中间组和南部远海组,不同群组的物种组成差异显著。南部中间组和南部远海组的物种多为东海外海种类,这可能是近岸黑潮底层分支影响的结果。物种数、Margalef丰富度、Shannon-Wiener多样性和Pielou均匀度从近海到与远海呈逐渐增加的趋势。CCA分析表明深度是显著影响底层鱼类的环境因子。短鳄齿鱼(Champsodon snyderi)、丝鳍(Repomucenus virgis)、多棘腔吻鳕(Coelorinchus multispinulosus)等东海外海种类与深度呈正相关,而优势种六丝钝尾虾虎鱼受环境因子影响较小。     

Spatial and temporal variation in surfclam (Spisula solidissima) larval supply and settlement on the New Jersey inner shelf during summer upwelling and downwelling

To examine the relationship between near-bottom larval surfclam concentrations and surfclam settlement at an inner continental shelf site off New Jersey (USA), four consecutive sets of settlement experiments were carried out at three stations at the Long-term Ecosystem Observatory (LEO-15) from 14 to 31 July 1997 during upwelling and downwelling. Two inshore stations were on the landward and seaward sides of Beach Haven Ridge at ∼12 m depth, and a third station was 8 km further offshore at ∼20 m depth. In each experiment, four replicate trays of azoic sand from Beach Haven Ridge were placed flush with the seafloor and exposed for 3–7 days. Larval surfclam concentrations were measured every 4 h at 1 m above the bottom (mab) using Moored, Automated, Serial Zooplankton Pumps at the three stations. At all three stations, larval surfclam concentrations (1 mab) were low during upwelling, and higher during and after downwelling. Pulses of highest larval surfclam concentrations coincided with the initial arrival of downwelled warm water. In addition, larval surfclam concentrations were higher at the two inshore stations than at the offshore station. Larval surfclam settlement in the trays was higher during and following downwelling than during upwelling at one inshore station and at the offshore station. At the other inshore station (landward of Beach Haven Ridge), surfclam settlement did not increase during and following downwelling. Overall, surfclam settlement was higher inshore than offshore. The results indicate that spatial and temporal variation in larval surfclam supply was controlled by upwelling and downwelling circulation and that surfclam settlement was influenced by larval supply. Bottom flows across Beach Haven Ridge during a storm may have reduced larval surfclam settlement on the upcurrent side of the ridge, affecting initial densities on a small (∼1 km) scale.     

Spatial heterogeneity of epibenthos on artificial reefs: fouling communities in the early stages of colonization on an East Australian shipwreck

Artificial reefs are spatially complex habitats and serve as good model systems to study patterns of community succession and the response of epibiota to environmental clines over small spatial scales. Here, we quantified spatial heterogeneity in community composition and diversity of fouling communities across a number of environmental gradients that included water depth, surface orientation of habitats, exposure to currents, and shelter. Assemblage structure was quantified by spatially replicated photo transects on a recently scuttled large navy ship off the East Australian coast, lying in 27 m of water. A rich assemblage of epifauna had colonized the wreck within a year, dominated by barnacles, sponges and bryozoans. Community structure varied significantly over small spatial scales of meters to tens of meters. Depth, surface orientation and exposure were the major environmental drivers. Assemblages were substantially less diverse and abundant on the deepest (23 m near the seafloor) part of the hull with residual antifouling paint, on sheltered surfaces inside the wreck, and on the sediment‐laden horizontal surfaces. Overall, the wrecks’ habitat complexity corresponds with small‐scale heterogeneity in the fouling communities. This study supports the notion that wrecks enhance local diversity and biomass within the habitat mosaic of their location, and habitat complexity may be an important mechanism for this, as demonstrated by the large spatial variability in the assemblages documented here.     

Environmental factors shaping boring sponge assemblages at Mexican Pacific coral reefs

Recent studies suggest a future increase in sponge bioerosion as an outcome of coral reef decline around the world. However, the factors that shape boring sponge assemblages in coral reefs are not currently well understood. This work presents the results of a 17‐month assessment of the presence and species richness of boring sponges in fragments collected from living corals, dead coral reef matrix and coral rubble from Punta de Mita and Isabel Island, two coral reefs from the central coast of the Mexican Pacific Ocean. Both localities have a high cover of dead corals generated by past El Niño Southern Oscillation events, but Punta de Mita was also highly exposed to anthropogenic impacts. Additionally, environmental factors (water transparency, water movement, temperature, sediment deposition, SST, and chlorophyll concentration) were assessed to test the hypothesis that environmental conditions which are potentially harmful for corals can enhance sponge bioerosion. Isabel Island and Punta de Mita showed a similar species richness (13 and 11 species, respectively) but boring sponge presence in both live and dead corals was higher at Isabel Island (57.6%) than at Punta de Mita (35.7%). The same result was obtained when each type of substrate was analysed separately: dead coral reef matrix (81.3% versus 55.5%), coral rubble (47.7% versus 20.0%) and living corals (43.7% versus 31.7%). A principal components analysis showed a higher environmental heterogeneity at Punta de Mita, as well as important environmental differences between Punta de Mita and Isabel Island, due to sediment deposition (2.0 versus 0.2 kg·m^?2·d^?1) and water movement (24.5% versus 20.5% plaster dissolution day^?1), that were also negatively correlated with boring sponge presence (r = ?0.7). By analysing the boring sponge assemblage, we found that environmental settings, together with habitat availability (i.e., dead coral substrate) differentiated assemblage structure at both localities. Major structural differences were largely due to species such as Cliona vermifera, Cliona tropicalis and Aka cryptica. In conclusion, factors such as habitat availability favored the presence of boring sponges but some environmental factors such as abrasion resulting from moving sediment acted restrictively, and exerted a major role in structuring boring sponge assemblages in the Mexican Pacific.     

Changing structure of benthic foraminiferal communities: implications from experimentally grown assemblages from coastal Georgia and Florida,USA

Environmental changes such as ocean warming or sea‐level rise have a profound impact on shallow‐water coastal environments. Benthic foraminifera have long been successfully used as indicators for ecologic responses. The propagule method is a useful tool to evaluate the reactions of entire assemblages of foraminifera when exposed to different environmental conditions. Here we present results from growth experiments of foraminiferal assemblages from three sites in coastal Georgia and Florida (USA) under different temperatures (18, 24 and 30 °C) and salinities (15 and 35). Results show that assemblages grown at the higher temperatures had greater abundances of foraminifera, whereas salinity was the primary factor in shaping the composition of the experimentally grown assemblages from the three sites. We also show that experimentally grown assemblages contain high numbers of ‘exotic’ species that result from successful propagule recruitment from outside of the original environments (e.g. the open shelf). Overall, opportunistic and previously termed ‘pioneer species’ proved to be the most successful constituents of the experimental assemblages, showing that reactions of foraminiferal assemblages to environmental changes can appear remarkably quickly (e.g. in the course of several weeks). Our observations on the faunal reactions to different temperatures and salinities indicate that ongoing environmental alterations of coastal areas will likely result in significant changes in the shallow‐water foraminiferal assemblages of the coasts of Georgia and Florida. As such, our study provides general insights into the ecologic effects of current climate change.     

An analysis of sponge diversity and distribution at three taxonomic levels in the Thousand Islands/Jakarta Bay reef complex, West-Java, Indonesia

Very few coral reefs are located close enough to large cities to study the influence of large urban populations on reef assemblages. An exception is the Thousand Islands reef complex to the north of Jakarta, the capital city of Indonesia, and one of the largest conurbations in the world. Here we present data from a detailed survey where sponge assemblages were assessed at 30 patch reefs associated with islands in three coastal zones along an in-to-offshore gradient. Sponge assemblages are described at three taxonomic levels of detail (species, genus and family level). We recorded a total of 118 sponge species, 64 genera and 36 families, Aaptos suberitoides (Brønsted, 1934), Clathria (Thalysias) reinwardti (Vosmaer, 1880), Petrosia (Petrosia) nigricans (Lindgren, 1897) and Xestospongia testudinaria (Lamarck, 1813) were the most common species overall. There was a pronounced difference in composition among zones with the most distinct difference between the inshore zone and the other two zones. The inshore environment was characterised by very high turbidity and low live coral cover; the dominant substrate consisted of algal turf and sand. Environmental conditions improved and sponge diversity increased further offshore, although most areas appeared to have been affected by some form of disturbance. Ordinations were also largely congruent, at species, generic and family levels of taxonomic resolution. This indicates that variation in composition at higher taxonomic levels is a good indicator of variation at lower taxonomic levels, at least when there is a pronounced environmental gradient.     

Mesoscale and microscale spatial variability of bacteria and viruses during a Phaeocystis globosa bloom in the Eastern English Channel

Sampling was conducted within inshore and offshore sites, characterized by highly dissimilar hydrodynamic and hydrobiological conditions, in the Eastern English Channel. The eutrophic inshore site was dominated by the influence of a dense bloom of the Prymnesiophyceae phytoplankton species Phaeocystis globosa, while the offshore site was characterized by more oceanic conditions. Within each site the microscale distributions of chlorophyll a and several flow cytometrically-defined subpopulations of heterotrophic bacteria and viruses were measured at a spatial resolution of 5 cm. The inshore site was characterized by comparatively high levels of microscale spatial variability, with concentrations of chlorophyll a, heterotrophic bacteria, and viruses varying by 8, 11 and 3.5-fold respectively across distances of several centimeters. Within the offshore site, microscale distributions of chlorophyll a and bacteria were markedly less variable than within the inshore site, although viruses exhibited slightly higher levels of heterogeneity. Significant mesoscale variability was also observed when mean microbial parameters were compared between the inshore and offshore sites. However, when the extent of change (max/min and coefficient of variation) was compared between meso- and microscales, the variability observed at the microscale, particularly in the inshore site, was substantially greater. This pattern suggests that microscale processes associated with Phaeocystis globosa bloom dynamics can generate heterogeneity amongst microbial communities to a greater degree than large scale oceanographic discontinuities.