Changes in the circulation of Tampa Bay due to Hurricane Frances as recorded by ADCP measurements and reproduced with a numerical Ocean model

Hurricane Frances is shown to greatly alter the hydrodynamics within Tampa Bay, Florida, and the exchange of water with the Gulf of Mexico in both observational data and a realistic numerical circulation model of the Tampa Bay estuary. Hurricane Frances hit Tampa Bay on September 5, 2004 with surface winds peaking twice near 22 m s⁻¹. There were three stages to the hydrodynamic effect of Frances on Tampa Bay. The first stage included the approach of Frances up to the first wind peak. The winds were to the south and southeast. During this stage sea level was maintained below mean sea level (MSL) and the residual current (demeaned, detided) was weak. The second stage began as the winds turned to the east and northeast, as the eye passed near the bay, and ended as the second wind peak appeared. During this stage the residual currents were strongly positive (into the bay), raising sea level to 1.2 m above MSL at St. Petersburg. The measured residual circulation peaked at over +0.7 m s⁻¹ near the surface. The model shows this velocity peak yielded a maximum volume flux into the bay of +44,227 m³ s⁻¹, displacing a total volume of 1.5 billion m³ in just a few hours, about 42% of the bay volume. In the third stage a strong negative flow developed as the wind and sea level relaxed to near normal levels. The ADCP measured a peak outflow of −0.8 m s⁻¹ during this time. Model results indicate a maximum flux of −37,575 m³ s⁻¹, and that it took about 50 h to drain the extra volume driven into the bay by Hurricane Frances.     

Tropical Storm and Hurricane wind effects on water level, salinity, and sediment transport in the river-influenced Atchafalaya-Vermilion Bay System, Louisiana, USA

Changes in circulation, water level, salinity, suspended sediments, and sediment flux resulted from Tropical Storm Frances and Hurricane Georges in the Vermilion-Atchafalaya Bay region during September 1998. Tropical Storm Frances made landfall near Port Aransas, Texas, 400 km west of the study area, and yet the strong and long-lived southeasterly winds resulted in the highest water levels and salinity values of the year at one station in West Cote Blanche Bay. Water levels were abnormally high across this coastal bay system, although salinity impacts varied spatially. Over 24 h, salinity increased from 5 to 20 psu at Site 1 on the east side of West Cote Blanche Bay. Abnormally high salinities were recorded in Atchafalaya Bay but not at stations in Vermilion Bay. On September 28, 1998, Hurricane Georges made landfall near Biloxi, Mississippi, 240 km east of the study area. On the west side of the storm, wind stress was from the north and maximum winds locally reached 14 m s⁻¹. The wind forcing and physical responses of the bay system were analogous to those experienced during a winter cold-front passage. During the strong, north wind stress period, coastal water levels fell, salinity decreased, and sediment-laden bay water was transported onto the inner shelf. As the north wind stress subsided, a pulse of relatively saline water entered Vermilion Bay through Southwest Pass increasing salinity from 5 to 20 psu over a 24-h period. National Oceanic and Atmospheric Administration (NOAA)-14 reflectance imagery revealed the regional impacts of wind-wave resuspension and the bay-shelf exchange of waters. During both storm events, suspended solid concentrations increased by an order of magnitude from 75 to over 750 mg l⁻¹. The measurements demonstrated that even remote storm systems can have marked impacts on the physical processes that affect ecological processes in shallow coastal bay systems.     

Alteration of Residual Circulation Due to Large-Scale Infrastructure in a Coastal Plain Estuary

Large-scale human-built infrastructure is shown to alter the salinity and subtidal residual flow in a realistic numerical simulation of hydrodynamic circulation in a coastal plain estuary (Tampa Bay). Two model scenarios are considered. The first uses a modern bathymetry and boundary conditions from the years 2001–2003. The second is identical to the first except that the bathymetry is based on depth soundings from the pre-construction year 1879. Differences between the models' output can only result from changes in bay morphology, in particular built infrastructure such as bridges, causeways, and dredging of the shipping channel. Thirty-day means of model output are calculated to remove the dominant tidal signals and allow examination of the subtidal dynamics. Infrastructure is found to steepen the mean axial salinity gradient $ \partial \overline{s}/ dx $ by ~40% when there is low freshwater input but flatten $ \partial \overline{s}/ dx $ by ~25% under more typical conditions during moderate freshwater inflow to the estuary. Deepening of the shipping channel also increases the magnitude of the residual Eulerian circulation, allowing for larger up-estuary salt transport. Local bathymetry and morphology are important. Some regions within the estuary show little change in residual circulation due to infrastructure. In others, the residual circulation can vary by a factor of 4 or more. Major features of the circulation and changes due to infrastructure can be partially accounted for with linear theory.     

Reconstructing the History of eastern and Central Florida Bay using mollusk-shell isotope records

Stable isotopic ratios of carbon and oxygen (δ¹³C and δ¹⁸O) from mollusk shells reflect the water quality characteristics of Florida Bay and can be used to characterize the great temporal variability of the bay. Values of δ¹⁸O are directly influenced by temperature and evaporation and may be related to salinity, δ¹³C values of δ¹³C are sensitive to organic and inorganic sources of carbon and are influenced by productivity. Analyses of eight mollusk species from five short-core localities across Florida Bay show large ranges in the values of δ¹³C and δ¹⁸O, and reflect the variation of the bay over decades. Samples from southwester Florida Bay have distinct δ¹³C values relative to samples collected in northeastern Florida Bay, and intermediate localities have intermediate values.¹³C values of δ¹³C grade from marine in the southwest bay to more estuarine in the northeast. Long cores (>1m), with excellent chronologies were analyzed from central and eastern Florida Bay. Preliminary analyses ofBrachiodontes exustus andTransenella spp. from the cores showed that both δ¹³C and δ¹⁸O changed during the first part of the twentieth century. After a century of relative stability during the 1800s, δ¹³C decreased between about 1910 and 1940, then stabilized at these new values for the next five decades. The magnitude of the reduction in δ¹³C values increased toward the northeast. Using a carbon budget model, reduced δ¹³C values are interpreted as resulting from decreased circulation in the bay, probably associated with decreased freshwater flow into the Bay. Mollusk shell δ¹⁸O values display several negative excursions during the 1800s, suggesting that the bay was less evaporitic than during the twentieth century. The isotope records indicate a fundamental change took place in Florida Bay circulation early in the twentieth century. The timing of the change links it to railroad building and early drainage efforts in South Florida rather than to flood control and water management measures initiated after World War II.     

ENSO impacts on salinity in Tampa Bay, Florida

Estuarine salinity distributions reflect a dynamic balance between the processes that control estuarine circulation. At seasonal and longer time scales, freshwater inputs into estuaries represent the primary control on salinity distribution and estuarine circulation. El Niño-Southern Oscillation (ENSO) conditions influence seasonal rainfall and stream discharge patterns in the Tampa Bay, Florida region. The resulting variability in freshwater input to Tampa Bay influences its seasonal salinity distribution. During El Niño events, ENSO sea surface temperature anomalies (SSTAs) are significantly and inversely correlated with salinity in the bay during winter and spring. These patterns reflect the elevated rainfall over the drainage basin and the resulting elevated stream discharge and runoff, which depress salinity levels. Spatially, the correlations are strongest at the head of the bay, especially in bay sections with long residence times. During La Niña conditions, significant inverse correlations between ENSO SSTAs and salinity occur during spring. Dry conditions and depressed stream discharge characterize La Niña winters and springs, and the higher salinity levels during La Niña springs reflect the lower freshwater input levels.     

Distribution and Trophic Importance of Anthropogenic Nitrogen in Narragansett Bay: An Assessment Using Stable Isotopes

Narragansett Bay has been heavily influenced by human activities for more than 200 years. In recent decades, it has been one of the more intensively fertilized estuaries in the USA, with most of the anthropogenic nutrient load originating from sewage treatment plants (STP). This will soon change as tertiary treatment upgrades reduce nitrogen (N) loads by about one third or more during the summer. Before these reductions take place, we sought to characterize the sewage N signature in primary (macroalgae) and secondary (the hard clam, Mercenaria mercenaria) producers in the bay using stable isotopes of N (δ¹⁵N) and carbon (δ¹³C). The δ¹⁵N signatures of the macroalgae show a clear gradient of approximately 4‰ from north to south, i.e., high to low point source loading. There is also evidence of a west to east gradient of heavy to light values of δ¹⁵N in the bay consistent with circulation patterns and residual flows. The Providence River Estuary, just north of Narragansett Bay proper, receives 85% of STP inputs to Narragansett Bay, and lower δ¹⁵N values in macroalgae there reflected preferential uptake of ¹⁴N in this heavily fertilized area. Differences in pH from N stimulated photosynthesis and related shifts in predominance of dissolved C species may control the observed δ¹³C signatures. Unlike the macroalgae, the clams were remarkably uniform in both δ¹⁵N (13.2 ± 0.54‰ SD) and δ¹³C (−16.76 ± 0.61‰ SD) throughout the bay, and the δ¹⁵N values were 2–5‰ heavier than in clams collected outside the bay. We suggest that this remarkable uniformity reflects a food source of anthropogenically heavy phytoplankton formed in the upper bay and supported by sewage derived N. We estimate that approximately half of the N in the clams throughout Narragansett Bay may be from anthropogenic sources.     

Nutrient dynamics in the Pomeranian Bay (southern Baltic): Impact of the Oder River outflow

The Pomeranian Bay is a coastal region fed by the Oder River, one of the seven largest Baltic rivers, whose waters flow through a large and complex estuarine system before entering the bay. Nutrients (NO₃ ⁻, NO₂ ⁻, NH₄ ⁺, Ntot, PO₄ ³⁻, P_tot, DSi), chlorophylla concentrations, oxygen content, salinity, and temperature were measured in the Pomeranian Bay in nine seasonally distributed cruises during 1993–1997. Strong spatial and temporal patterns were observed and they were governed by: the seasonally variable riverine water-nutrient discharges, the seasonally variable uptake of nutrients and their cycling in the river estuary and the Bay, the character of water exchange between the Pomeranian Bay and the Szczecin Lagoon, and the water flow patterns in the Bay that are dominated by wind-driven circulation. Easterly winds resulted in water and nutrient transport along the German coastline, while westerly winds confined the nutrient rich riverine waters to the Polish coast and transported them eastward beyond the study area. Two water masses, coastal and open, characterized by different chemical and physical parameters and chla content were found in the Bay independently of the season. The role of the Oder estuary in nutrient transformation, as well as the role of temperature in transformation processes is stressed in the paper. The DIN:DIP:DSi ratio indicated that phosphorus most probably played a limiting role in phytoplankton production in the Bay in spring, while nitrogen did the same in summer. During the spring bloom, predominated by diatoms, the DSi:DIN ratio dropped to 0.1 in the coastal waters and to 0.6 in the open bay waters, pointing to silicon limitation of diatom growth, similar to what is being observed in other Baltic regions.     

Hydrography and circulation in the northwestern Bay of Bengal during the retreat of southwest monsoon

The distribution of temperature and salinity in the upper 500 m of the northwestern Bay of Bengal, adjoining the east coast of India, during the retreat of southwest monsoon (September) of 1983 is presented. This study reveals coastal upwelling (limited to the upper 40 m) induced by the local winds. Waters of higher surface salinity near the coast characterize the upwelling. The freshwater influx near the head of the Bay diluted the surface salinity to as low as 26.0 × 10⁻³. The surface circulation was weak and led to a net transport of 2.0 × 10⁶m³.s⁻¹ directed towards northeast.     

Assessment of present and future nitrogen loads, water quality, and seagrass (Thalassia testudinum) depth distribution in Lemon Bay, Florida

Nitrogen loads into Lemon Bay, Florida were modeled to have increased ca. 59% between pre-development (i.e., 1850) estimates (5.3 kg TN ha⁻¹ yr⁻¹. and estimates for the year 1995 (8.4 kg TN ha⁻¹ yr⁻¹). By the year 2010, nitrogen loads are predicted to increase an additional 45% or 58%, depending upon progress being made toward replacing older septic tank systems with centralized sewerage (nitrogen loads of 12.2 and 13.3 kg TN ha⁻¹ yr⁻¹, respectively). Using 1995 estimates, nonpoint sources (stormwater runoff) are throught to be responsible for ca. 76% of the annual nitrogen load, followed by septic tank systems (14%), rainfall (10%), and an insignificant load from baseflow. Based on an empirically-derived nitrogen load:chlorophylla relationship developed for a portion of nearby Tampa Bay, a 45% increase in nitrogen loads into Lemon Bay could result in a 29% increase in annual average chlorophylla concentrations. Using the estimate of a 29% increase in future chlorophylla concentrations, an empirically-derived optical model for Lemon Bay suggests that light attenuation coefficients in the bay would increase ca. 9%, and the average depth limit ofThalassia testudinum in Lemon Bay would decrease by ca. 24%.     

Seasonal and long-term trends in the water quality of Florida Bay (1989–1997)

Analysis of 6 yr of monthly water quality data was performed on three distinct zones of Florida Bay: the eastern bay, central bay, and western bay. Each zone was analyzed for trends at intra-annual (seasonal), interannual (oscillation), and long-term (monotonic) scales. the variables TON, TOC, temperature, and TN∶TP ratio had seasonal maxima in the summer rainy season; APA and Chla, indicators of the size and activity of the microplankton tended to have maxima in the fall. In contrast, NO₃ ⁻, NO₂ ⁻, NH₄ ⁺, turbidity, and DO_sat, were highest in the winter dry season. There were large changes in some of the water quality variables of Florida Bay over the study period. Salinity and TP concentrations declined baywide while turbidity increased dramatically. Salinity declined in the eastern, central, and western Florida Bay by 13.6‰, 11.6‰, and 5.6‰, respectively. Some of the decrease in the eastern bay could be accounted for by increased freshwater flows from the Everglades. In contrast to most other estuarine systems, increased runoff may have been partially responsible for the decrease in TP concentrations as input concentrations were 0.3–0.5 μM. Turbidity in the eastern bay increased twofold from 1991 to 1996, while in the central and western bays it increased by factors of 20 and 4, respectively. Chla concentrations were particularly dynamic and spatially heterogeneous. In the eastern bay, which makes up roughly half of the surface area of Florida Bay, Chla declined by 0.9 μg l⁻¹ (63%). The hydrographically isolated central bay zone underwent a fivefold increase in phytoplankton biomass from 1989 to 1994, then rapidly declined to previous levels by 1996. In western Florida Bay there was a significant increase in Chla, yet median concentrations of Chla in the water column remained modest (∼2 μg l⁻¹) by most estuarine standards. Only in the central bay did the DIN pool increase substantially (threefold to sixfold). Notably, these changes in turbidity and phytoplankton biomass occurred after the poorly-understood seagrass die-off in 1987. It is likely the death and decomposition of large amounts of seagrass biomass can at least partially explain some of the changes in water quality of Florida Bay, but the connections are temporally disjoint and the process indirect and not well understood.     

Response of a subtropical estuarine marsh to local climatic change in the southwestern Gulf of Mexico

We examined the contrasting, effects of floods and droughts produced by large changes in local climatology on vegetation patterns in Nueces marsh, a semi-arid subtropical salt marsh in south Texas from 1995 to 2005. Climate variations during the study included an initial 4-yr period of moderate conditions, followed by a 2-yr interval of drought, and a recent 4-yr wet period that included large-scale floods. Variation in freshwater inflow, rainfall, and potential evapotranspiration were used in conjunction with field measurements of salinity, inorganic nitrogen, and vegetation structure collected at sites located at varying distances from Nueces Bay. Tidal creek salinities varied with Nueces Bay salinity, with strength of effect inversely related to distance from the bay. Mean (±standard deviation) pore water salinities ranged from 59±54‰ at two high, marsh stations farthest from the bay (10.1 km distant) to 30±21‰ in soil at a low marsh site closest to the bay (0.5 km distant). Mean pore water ammonium was also higher at stations most distant from the bay; nitrate + nitrite did not exhibit a high marsh to low marsh gradient. Nueces Bay salinity decreased substantially when the 10-d cumulative mean daily Nueces River flows exceeded 10 m³ s⁻¹. During periods of low and moderate flood frequency (flows mostly below 10 m³ s⁻¹), vegetation assemblages were dominated by stress-tolerant clonal plants. A catastrophic flood, which immersed vegetation for several weeks between July and September 2002, resulted in extensive plant mortality, but within months, unvegetated areas were rapidly colonized by the obligate annualSalicornia bigelovii. With the end of major flooding by late 2004, plant community structure began a return to pre-drought assemblages at high and middle marsh stations by summer 2005. At the low marsh station, new conditions favored clonal dominants (Spartina alterniflora andBorrichia frutescens), with the latter replacingSalicornia virginica as the dominant species. Our results support the theory that the importance of competition and abiotic stress in determining community composition are inversely related.     

Spatial and temporal variation in recent growth, overall growth, and mortality of juvenile weakfish (Cynoscion regalis) in Delaware Bay

We examined relative abundance of juvenile weakfish,Cynoscion regalis, collected during 1986 and 1987 and tested for spatial differences in growth and survival within Delaware Bay. Juvenile weakfish recruit to all areas of Delaware Bay, and two cohorts were present during each year of the study. Although catch per unit effort (CPUE) varied among areas within the bay, there was a general trend of higher CPUE at lower salinities; abundance quickly declined near the end of September in all areas of the bay. Estimated growth rates from otolith increment analysis of juvenile weakfish ranged from 0.69 mm d⁻¹ to 0.97 mm d⁻¹. Spatial and temporal patterns in recent growth rate followed a general pattern: highest in the middle bay, lowest in the upper bay, and intermediate in the lower bay. Mortality rates were usually lowest in the low salinity region of the middle and upper bay during both years. There was no difference in mortality between cohorts in the middle bay, while in the upper bay the later-spawned fish had lower mortality and in the lower bay the early-spawned fish had lower mortality. Analysis of spatial and temporal patterns in growth and mortality suggests that there is a seasonal trade-off between habitat usage and resource availability for juvenile weakfish. The function of oligohaline and mesohaline waters as optimal nursery areas (in terms of growth and survival) changes due to the seasonally dynamic physicochemical characteristics in Delaware Bay.     

Sources of Nutrients and Fecal Indicator Bacteria to Nearshore Waters on the North Shore of Kaua`i (Hawai`i,USA)

Water quality monitoring in Hanalei Bay, Kaua`i (Hawai`i, USA) has documented intermittent high concentrations of nutrients (nitrate, phosphate, silica, and ammonium) and fecal indicator bacteria (FIB, i.e., enterococci and Escherichia coli) in nearshore waters and spurred concern that contaminated groundwater might be discharging into the bay. The present study sought to identify and track sources of nutrients and FIB to four beaches in Hanalei Bay and one beach outside the bay, together representing a wide range of land uses. ²²³Ra and ²²⁴Ra activity, salinity, nutrient and FIB concentrations were measured in samples from the coastal aquifer, the nearshore ocean, springs, the Hanalei River, and smaller streams. In addition, FIB concentrations in beach sands were measured at each site, and the enterococcal surface protein (esp) gene assay was used to investigate whether the observed FIB originated from a human source. Nutrient concentrations in groundwater were significantly higher than in nearshore water, inversely correlated to salinity, and highly site specific, indicating local controls on groundwater quality. Fluxes of groundwater into Hanalei Bay were calculated using a mass-balance approach and represented at least 2–10% of river discharges. However, submarine groundwater discharge (SGD) may provide 2.7 times as much nitrate + nitrite to Hanalei Bay as does the Hanalei River. It may also provide significant fluxes of phosphate and ammonium, comprising 15% and 20% of Hanalei River inputs, respectively. SGD-derived silica inputs to the bay comprised less than 3% of Hanalei River inputs. FIB concentrations in groundwater were typically lower than those in nearshore water, suggesting that significant FIB inputs from SGD are unlikely. Positive esp gene assays suggested that some enterococci in environmental samples were of human fecal origin. Identifying how nutrients and FIB enter nearshore waters will help environmental managers address pressing water quality issues, including exceedances of the state Enterococcus water quality standard and nutrient loading to coral reefs.     

Flow balances in St. Andrew Bay revealed through hydrodynamic simulations

The circulation patterns in St. Andrew Bay, Florida are revealed through the application of a well-tested, extensively used three-dimensional hydrodynamic model. A high resolution grid resolving both the horizontal and vertical directions is used with a systematically developed set of forcing functions to simulate conditions over a full year. Water levels at the three open boundaries are deduced from a year-long deployment of pressure gauges, and freshwater loadings are based upon drainage basin characteristics and precipitation measurements. Model validation involves comparisons with hydrographic casts taken at twelve stations distributed throughout the bay at monthly intervals. The relative average error between the observed and model-predicted salinity is 15% for the surface of the water column and 4% for the bottom. The annual net flow balance consists of an influx of water at the two Intracoastal Waterway open boundaries, with that water exiting to the Gulf of Mexico. An average of about 100 m³ s⁻¹ enters from East Bay and about 40 m³ s⁻¹ enters through West Bay. On shorter time scales, the flow balance is quite variable both in terms of magnitude and direction. This study also presents methods to overcome the paucity of data that is usually available for the development of such a model. These include techniques to take bottom pressure data sets with short gaps and create reliable sea surface elevation boundary conditions and to take precipitation data and drainage basin characteristics and produce estimates of freshwater inflows.     

Long-Term and Seasonal Changes in Nutrients,Phytoplankton Biomass,and Dissolved Oxygen in Deep Bay,Hong Kong

Deep Bay is a semienclosed bay that receives sewage from Shenzhen, a fast-growing city in China. NH₄ is the main N component of the sewage (>50% of total N) in the inner bay, and a twofold increase in NH₄ and PO₄ concentrations is attributed to increased sewage loading over the 21-year period (1986–2006). During this time series, the maximum annual average NH₄ and PO₄ concentrations exceeded 500 and 39 μM, respectively. The inner bay (Stns DM1 and DM2) has a long residence time and very high nutrient loads and yet much lower phytoplankton biomass (chlorophyll (Chl) <10 μg L⁻¹ except for Jan, July, and Aug) and few severe long-term hypoxic events (dissolved oxygen (DO) generally >2 mg L⁻¹) than expected. Because it is shallow (~2 m), phytoplankton growth is likely limited by light due to mixing and suspended sediments, as well as by ammonium toxicity, and biomass accumulation is reduced by grazing, which may reduce the occurrence of hypoxia. Since nutrients were not limiting in the inner bay, the significant long-term increase in Chl a (0.52–0.57 μg L⁻¹ year⁻¹) was attributed to climatic effects in which the significant increase in rainfall (11 mm year⁻¹) decreased salinity, increased stratification, and improved water stability. The outer bay (DM3 to DM5) has a high flushing rate (0.2 day⁻¹), is deeper (3 to 5 m), and has summer stratification, yet there are few large algal blooms and hypoxic events since dilution by the Pearl River discharge in summer, and the invasion of coastal water in winter is likely greater than the phytoplankton growth rate. A significant long-term increase in NO₃ (0.45–0.94 μM year⁻¹) occurred in the outer bay, but no increasing trend was observed for SiO₄ or PO₄, and these long-term trends in NO₃, PO₄, and SiO₄ in the outer bay agreed with those long-term trends in the Pearl River discharge. Dissolved inorganic nitrogen (DIN) has approximately doubled from 35–62 to 68–107 μM in the outer bay during the last two decades, and consequently DIN to PO₄ molar ratios have also increased over twofold since there was no change in PO₄. The rapid increase in salinity and DO and the decrease in nutrients and suspended solids from the inner to the outer bay suggest that the sewage effluent from the inner bay is rapidly diluted and appears to have a limited effect on the phytoplankton of the adjacent waters beyond Deep Bay. Therefore, physical processes play a key role in reducing the risk of algal blooms and hypoxic events in Deep Bay.     

Dispersion and recruitment of crab larvae in the Chesapeake Bay plume: Physical and biological controls

As part of the Microbial Exchanges and Coupling in Coastal Atlantic Systems (MECCAS) Project, crab larvae were collected in the shelf waters off Chesapeake Bay in June and August 1985 and April 1986. We conducted hydrographic (temperature, salinity, nutrients) and biological (chlorophyll, copepods) mapping in conjunction with Eulerian and Lagrangian time studies of the vertical distribution of crab larvae in the Chesapeake Bay plume. These abundance estimates are used with current meter records and drifter trajectories to infer mechanisms of larval crab dispersion to the shelf waters and recruitment back into Chesapeake Bay. The highest numbers of crab larvae were usually associated with the Chesapeake Bay plume, suggesting that it was the dominant source of crab larvae to shelf waters. Patches of crab larvae also were found in the higher salinity shelf waters, and possibly were remnants of previous plume discharge events. The distribution of crab larvae in the shelf waters changed on 1–2 d time scales as a consequence of both variations in the discharge rate of the Chesapeake Bay plume and local wind-driven currents. Downwelling-favorable winds (NW) intensified the coastal jet and confined the plume and crab larvae along the coast. In April during a downwelling event (when northwesterly winds predominated), crab zoeae were transported southward along the coast at speeds that at times exceeded 168 km d⁻¹. During June and August the upwelling-favorable winds (S, SW) opposed the anticyclonic turn of the plume and, via Ekman circulation, forced the plume and crab larvae to spread seaward. Plume velocities during these conditions generally were less than 48 km d⁻¹. The recruitment of crab larvae to Chesapeake Bay is facilitated in late summer by the dominance of southerly winds, which can reverse the southward flow of shelf waters. Periodic downwelling-favorable winds can result in surface waters and crab larvae moving toward the entrance of Chesapeake Bay. Approximately 27% of the larval crabs spend at least part of the day in bottom waters, which have a residual drift toward the bay mouth. There appears to be a variety of physical transport mechanisms that can enhance the recruitment of crab larvae into Chesapeake Bay.     

Phytoplankton Size and Taxonomic Composition in a Temperate Estuary Influenced by Monsoon

Temporal and spatial variations in phytoplankton in Asan Bay, a temperate estuary under the influence of monsoon, were investigated over an annual cycle (2004). Phytoplankton blooms started in February (>20 μg chl l⁻¹) and continued until April (>13 μg chl l⁻¹) during the dry season, especially in upstream regions. The percentage contribution of large phytoplankton (micro-sized) was high (78–95%) during the blooms, and diatoms such as Skeletonema costatum and Thalassiosira spp. were dominant. The precipitation and freshwater discharge from embankments peaked and supplied nutrients into the bay during the monsoon event, especially in July. Species that favor freshwater, such as Oscillatoria spp. (cyanobacteria), dominated during the monsoon period. The phytoplankton biomass was minimal in this season despite nutrient concentrations that were relatively sufficient (enriched), and this pattern differed from that in tropical estuaries affected by monsoon and in temperate estuaries where phytoplankton respond to nutrient inputs during wet seasons. The flushing time estimated from the salinity was shorter than the doubling time in Asan Bay, which suggests that exports of phytoplankton maximized by high discharge directly from embankments differentiate this bay from other estuaries in temperate and tropical regions. This implies that the change in physical properties, especially in the freshwater discharge rates, has mainly been a regulator of phytoplankton dynamics since the construction of embankments in Asan Bay.     

Fish assemblage structure in relation to environmental variation in a Texas Gulf coastal wetland

We described seasonal fish-assemblages in an estuarine marsh fringing Matagorda Bay, Gulf of Mexico. Habitat zones were identified by patterns of fish species abundance and indicator species optima along gradients in salinity, dissolved oxygen (DO), and depth in our samples. Indicators of the lower brackish zone (lower lake and tidal bayou closest to the bay) were gulf menhaden (Brevoortia patronus), bay anchovy (Anchoa mitchilli), silver perch (Bairdiella chrysoura), and spotted seatrout (Cynoscion nebulosus) at salinity >15‰, DO 7–10 mg l⁻¹, and depth <0.5 m. Indicators of the upper brackish zone (lake and fringing salt marsh) were pinfish (Lagodon rhomboides) and spot (Leiostomus xanthurus) at salinity 10–20‰, DO >10 mg l⁻¹, and depth <0.5 m. In the freshwater wetland zone (diked wetland, ephemeral pool, and perennial scour pool), indicators were sheepshed minnow (Cyprinod on variegatus), rainwater killifish (Lucania parva), mosquitofish (Gambusia affinis), and sailfin molly (Poecilia latipinna) at salinity <5‰, DO <5 mg l⁻¹, and depth ≥1 m. In the freshwater channelized zone (slough and irrigation canal), indicators were three sunfish species (Lepomis), white crappie (Pomoxis annularis), and gizzard shad (Dorosoma cepedianum) at salinity <5‰, DO <5 mg l⁻¹, and depth >1.5 m. In brackish zones, seasonal variation in species diversity among sites was positively correlated with temperature, but assemblage structure also was influenced by depth and DO. In the freshwater zones, seasonal variation in species diversity among sites was positively correlated with depth, DO, and salinity, but assemblage structure was weakly associated with temperature. Species diversity and assemblage structure were strongly affected by the connectivity between freshwater wetland and brackish zones. Uncommon species in diked wetlands, such as tarpon (Megalops atlanticus) and fat sleeper (Dormitator maculatus), indicated movement of fishes from the brackish zone as the water level rose during natural flooding and scheduled (July) releases from the diked wetland. From September to July, diversity in the freshwater wetland zone decreased as receding waters left small isolated pools, and fish movement became blocked by a water-control structure. Subsequently, diversity was reduced to a few species with opportunistic life histories and tolerance to anoxic conditions that developed as flooded vegetation decayed.     

Microzooplankton grazing and nitrogen excretion across a surface estuarine-coastal interface

The role of the microzooplankton community in regulating phytoplankton biomass was examined across a gradient from a river-dominated estuary to an oceanic-influenced coastal zone. Three stations located along a salinity gradient from the central region of Mobile Bay to 10 km off the coast were sampled from May 1994 to August 1995. Microzooplankton herbivory rates on phytoplankton and microzooplankton excretion of nitrogen derived from phytoplankton were estimated using the dilution technique. Microzooplankton grazing rates (range of station means=0.57–1.10 d⁻¹) and phytoplankton growth rates (0.70–1.62 d⁻¹) both increased across the salinity gradient from the bay station to the offshore station. However, the percent of primary production grazed per day was highest at the bay station (mean=83%) and decreased to a low at the offshore station (mean=64%). Excretion of phytoplankton-derived nitrogen by the microzooplankton was greatest at the bay and bay mouth stations. Excreted nitrogen could potentially supply 39%, 29%, and 20% of phytoplankton nitrogen demand at the bay, bay mouth, and offshore stations, respectively. These results support the idea that herbivorous microzooplankton are important in mediating nitrogen flow to both lower and higher trophic levels. *** DIRECT SUPPORT *** A01BY085 00012     

A Numerical Simulation of Residual Circulation in Tampa Bay. Part II: Lagrangian Residence Time

Lagrangian retention and flushing are examined by advecting neutrally buoyant point particles within a circulation field generated by a numerical ocean model of Tampa Bay. Large temporal variations in Lagrangian residence time are found under realistic changes in boundary conditions. Two 90-day time periods are examined. The first (P1) is characterized by low freshwater inflow and weak baroclinic circulation. The second (P2) has high freshwater inflow and strong baroclinic circulation. At the beginning of both time periods, 686,400 particles are released uniformly throughout the bay. Issues relating to particle distribution and flushing are examined at three different spatial scales: (1) at the scale of the entire bay, (2) the four major regions within the bay, and (3) at the scale of individual model grid cells. Two simple theoretical models for the particle number over time, N(t), are fit to the particle counts from the ocean model. The theoretical models are shown to represent N(t) reasonably well when considering the entire bay, allowing for straightforward calculation of baywide residence times: 156 days for P1 and 36 days for P2. However, the accuracy of these simple models decreases with decreasing spatial scale. This is likely due to the fact that particles may exit, reenter, or redistribute from one region to another in any sequence. The smaller the domain under consideration, the more this exchange process dominates. Therefore, definitions of residence time need to be modified for “non-local” situations. After choosing a reasonable definition, and removal of the tidal and synoptic signals, the residence times at each grid cell in P1 is found to vary spatially from a few days to 90 days, the limit of the calculation, with an average residence time of 53 days. For P2, the overall spatial pattern is more homogeneous, and the residence times have an average value of 26 days.