Modeling wave�Ccurrent bottom boundary layers beneath shoaling and breaking waves

The boundary layer characteristics beneath waves transforming on a natural beach are affected by both waves and wave-induced currents, and their predictability is more difficult and challenging than for those observed over a seabed of uniform depth. In this research, a first-order boundary layer model is developed to investigate the characteristics of bottom boundary layers in a wave–current coexisting environment beneath shoaling and breaking waves. The main difference between the present modeling approach and previous methods is in the mathematical formulation for the mean horizontal pressure gradient term in the governing equations for the cross-shore wave-induced currents. This term is obtained from the wave-averaged momentum equation, and its magnitude depends on the balance between the wave excess momentum flux gradient and the hydrostatic pressure gradient due to spatial variations in the wave field of propagating waves and mean water level fluctuations. A turbulence closure scheme is used with a modified low Reynolds number k-ε model. The model was validated with two published experimental datasets for normally incident shoaling and breaking waves over a sloping seabed. For shoaling waves, model results agree well with data for the instantaneous velocity profiles, oscillatory wave amplitudes, and mean velocity profiles. For breaking waves, a good agreement is obtained between model and data for the vertical distribution of mean shear stress. In particular, the model reproduced the local onshore mean flow near the bottom beneath shoaling waves, and the vertically decreasing pattern of mean shear stress beneath breaking waves. These successful demonstrations for wave–current bottom boundary layers are attributed to a novel formulation of the mean pressure gradient incorporated in the present model. The proposed new formulation plays an important role in modeling the boundary layer characteristics beneath shoaling and breaking waves, and ensuring that the present model is applicable to nearshore sediment transport and morphology evolution.     

Effects of sediment on fish communities in East Cape streams,North Island,New Zealand

We examined the effects of sediment on fish communities at 38 sites in the East Cape region of New Zealand. Many streams in this region are subject to high sediment loads, a natural situation that has been exacerbated by the conversion of native forest to pasture. The fish community consisted of diadromous native species common throughout New Zealand that require access to and from the sea. We found that site altitude and distance inland were important factors in determining the abundance and composition of the fish community. We used four measures as indices of sediment load: suspended sediment concentration, median substrate size, substrate stability, and the ratio of the wetted width to the width of the active (non‐vegetated) stream channel. Although all indices were correlated, the ratio of wetted width to width of active channel was most closely related to fish abundance and diversity. Fish abundance and diversity reduced as sediment load increased among streams, with up to nine fish species in streams with low sediment loads and only two species in streams with high sediment loads. In‐stream habitat also varied with sediment load; as load increased, depth and substrate size decreased and velocity increased. These results suggest that activities that increase sediment loads in rivers will have a negative impact on native fish communities in New Zealand.     

Food consumption of fish in a sub-tropical SW Atlantic ecosystem off Brazil: comparison of four Sciaenid species

The first evaluations of the daily ration and population food consumption of four Sciaenid fish, under natural conditions for the Brazilian south-western Atlantic shelf (23°35′S, 45°00′W) are presented. The average daily ration ranged from 4.38 to 12.92 % body mass (90% confidence interval) for the juvenile shortfin corvina (Isopisthus parvipinnis), from 0.41 to 5.52 % body mass (90% confidence interval) for the juvenile shorthead drum (Larimus breviceps) and from 3.14% to 3.15% body mass for the juvenile whitemouth croacker (Micropogonias furnieri). Juveniles of the banded croacker (Paralonchurus brasiliensis) showed higher estimates (2.58–2.60% body mass) than those for the adults (1.2–1.84% body mass). The mean food consumption rate of the population was estimated at about 11 and 8 year^–1, respectively, for the whitemouth croacker, and banded croacker, corresponding to a gross efficiency of 13 and 10%. The estimates of daily ration were related to the feeding habits as well as to size of the fish, and probably to their specific energy budget. Estimates of population food consumption are related to population structure.     

鮸状黄姑鱼早期发育阶段的摄食与生长特性

1997年4－5月,在集美大学水产学院海水育苗试验场,采用生态学方法对人工培育的状黄姑鱼仔、稚、幼鱼的援食和生长特性进行分析。结果表明,在人工培育条件下,仔、稚、幼鱼的摄食率达97.9％,摄食量占体重的1．4％－23．4％,日摄食量占体重的36．47％－6519％;摄食具明显的昼夜节律,黄昏和早晨为摄食高峰;对较大个体的饵料生物有明显的选择性;饵料密度对摄食量有一定影响。摄食量与体重的关系式为y=0.1327x＋0．5613,全长与日龄的关系式为LT=2.5799eg.g516D,体重与日龄的回归方程为W=0．0537e‘.1786D,全长与体重的回归方程为W＝0．0042L。     

Food intake and body measurements of Atlantic bottlenose dolphins (Tursiops truncates) in captivity

The food consumption (recorded in kg of individual fish species), body length and mass of 11 Atlantic bottlenose dolphins kept first at Windsor Safari Park, UK (1979-1993/1994), and later at Harderwijk Marine Mammal Park, The Netherlands (1993/1994-1995) are reported. This broad-scale, longitudinal study is based on historical data that were originally recorded for short-term husbandry purposes. The chemical composition and caloric value of the diet were variable and were not recorded. The food intake quantities should therefore be viewed as rough weight estimates of what wild conspecifics might eat (depending on their diet). The average annual food consumption of adult males and non-pregnant, non-lactating females was approximately 2000 kg of fish (estimated at 176 x 10(5) kJ). Food consumption showed little increase during gestation, but was 58-97% higher during lactation than during similar periods in non-reproductive years. All six calves began to eat solid food within a year of birth although suckling continued for 14-37 months after birth. The pattern of food intake of mothers and calves varied substantially between suckling periods. No seasonal changes in food consumption were detected, although there were small seasonal changes in water temperature. Births occurred at various times of year, since the timing of mating varied between years. The animals' body length increased rapidly during the first 3 years of life after which the growth rate decreased. Body length reached asymptote at approximately 270 cm. Adults of both sexes weighed around 260 kg. The relationship between standard body length (in cm) and body mass (in kg), although based on a small sample size (n = 16), can be expressed as body mass = 17.261e(0.0156(body length-100)). Animals weighing 155-225 kg consumed between 2 and 4% of their body mass per day.     

Long-chain monounsaturated fatty acids as biomarkers for the dispersal of organic waste from a fish enclosure

Sedimentation of food particles and fecal pellets under fish pens can lead to organic enrichment of the sediment. This study looked at the potential of lipid biomarkers as an indicator for the dispersal of organic waste from a fish enclosure. The lipid class and fatty acid composition of settling particles collected by sediment traps on a transect away from a cod enclosure was determined. The proportions of free fatty acids and of three long-chain monounsaturated fatty acids close to the fish pens were significantly higher (p<0.05) than before the fish enclosure was in operation and decreased moving away from the pens. This indicated a higher contribution of feces and/or uneaten feed to the settling particles at this location. Free fatty acids are the major lipid class in feces. Long-chain monounsaturated fatty acids are abundant in the feed and are also found in high proportions in feces because of their lower digestibility compared to other fatty acids.     

Nematode community dynamics over an annual production cycle in the central North Sea

Nematode species composition, trophic structure and body size distributions were followed over an annual production cycle in the central North Sea; to test responses to temporally changing food quality and quantity in the sediment. Changes in the phytoplankton concentration in the water column were quantitatively reflected in the concentration of chlorophyll a and breakdown products in the sediment, with higher concentrations in spring and autumn following blooms, and lower concentrations in summer and winter. The taxonomic and trophic structure of nematode communities differed significantly among stations over relatively short distances, potentially masking some of the temporal dynamics. Spatio-temporal differences in nematode species composition were linked to changes in the quality and quantity of organic material reaching the seabed, reflecting a species-specific response to the nutritional quality of sedimenting organic material and the biochemical changes in the sediment associated with its decomposition. The size distributions of selected nematode species indicated that most species bred continuously throughout the sampling period, although one species, the epigrowth feeder Spilophorella paradoxa, had periods of increased growth following the deposition of the spring phytoplankton bloom. There was no consistent temporal relationship between the trophic composition of nematode communities and spring chlorophyll a or carbon sedimentation, most likely a result of the trophic plasticity of most feeding types and the capacity of the community to use both freshly sedimented material as well as the subsequent breakdown products and refractory organic matter. Community metrics implied that there were small responses to the seasonal production cycle, but these belied strong responses of a few species with life histories that allowed them to track the availability of suitable food resources.     

Sediment transport by fishes in Harrington Sound,Bermuda

Harrington Sound, Bermuda, is a shallow subtropical lagoon with carbonate sediments. The most important fishes in this lagoon, in terms of biomass, are grunts (Haemulon aurolineatum, H. flavolineatum, H. sciurus) and a sea-bream (Diplodus bermudensis). These undertake diel feeding migrations from the shallow rocky zone towards the deeper sand and mud zones. When feeding on zoobenthos they cannot avoid swallowing carbonate sediment particles. These sediment particles pass through the alimentary canal of the fishes and are deposited again, after digestion of the food, as faeces in the shallow zones. Thus, the fishes transport the sediment in an unusual direction, from the deep to the shallow zones, in effect against the force of gravity. By recording the fish stock densities, digestion rates, and calcium carbonate content of fish stomach and guts, it was possible to estimate the amount of sediment transported by the fishes. In Harrington Sound, this amounts annually to 4530 kg calcium carbonate, 40% of which is deposited in the very shallow areas. The pH-values measured in fish stomachs seem to be acidic enough for the dissolution of carbonate sediment particles when transported by fishes.     

Do abyssal scavengers use phytodetritus as a food resource? Video and biochemical evidence from the Atlantic and Mediterranean

Deep-sea benthic communities derive their energetic requirements from overlying surface water production, which is deposited at the seafloor as phytodetritus. Benthic invertebrates are the primary consumers of this food source, with deep-sea fish at the top of the trophic hierarchy. Recently, we demonstrated with the use of baited cameras that macrourid fish rapidly respond to and feed vigorously on large plant food falls mimicked by spinach (Jeffreys et al., 2010). Since higher plant remains are scarce in the deep-sea, with the exception of canyons, where terrestrial material has been observed, these results led us to ask if a more commonly documented plant material i.e. phytodetritus might form a food source for deep-sea fish and mobile scavenging megafauna. We simulated a phytodetritus dump at the seafloor in two contrasting environments (1) the NE Atlantic where carpets of phytodetritus have been previously observed and (2) the oligotrophic western Mediterranean, where the deposition of phytodetritus at the seafloor is a rare occurrence. We recorded the response of the scavenging fauna using an in situ benthic lander equipped with baited time-lapse cameras. In the NE Atlantic at 3000 m, abyssal macrourids and cusk-eels were observed ingesting the phytodetritus. The phytodetrital patch was significantly diminished within 2 h. Abundance estimates calculated from first arrival times of macrourids at the phytodetrital patch in the Atlantic corresponded with abundance estimates from video-transect indicating that fish were attracted to the scent of phytodetrital bait. In contrast to this, in the western Mediterranean at 2800 m a single macrourid was observed investigating the phytodetrital patch but did not feed from it. The phytodetrital patch was significantly diminished within 6.5 h as a result of mainly invertebrate activity. At 1900 m, Lepidion lepidion was observed near the lander and the bait, but did not feed. The phytodetrital patch remained intact until the end of the experiment. In the deployments in the Mediterranean abundance estimates from first arrival times at the bait, corrected for their body size, were lower than estimates obtained from video-transects and trawl catches. This suggests that the Mediterranean fish were not readily attracted to this food source. In contrast, invertebrates in the Balearic Sea were observed ingesting the phytodetritus bait despite the rare occurrence of phytodetritus dumps in the Mediterranean. Stable isotope values of the fish at both study sites, set within the context of the benthic food web, did not demonstrate a strong trophic link to phytodetritus. Fatty acid profiles of these fish indicated a strong link between their lipid pool and primary producers i.e. phytoplankton, which may be attributed to trophic transfer. The usefulness of fatty acid biomarkers in ascertaining deep-sea fish diets is discussed. Our study suggests that the abyssal grenadier C. armatus on the Atlantic Iberian margin is attracted to phytodetritus. However the exact contribution of this food source to the diet of macrourids in this area remains unresolved.     

Nematode community dynamics over an annual production cycle in the central North Sea

Nematode species composition, trophic structure and body size distributions were followed over an annual production cycle in the central North Sea; to test responses to temporally changing food quality and quantity in the sediment. Changes in the phytoplankton concentration in the water column were quantitatively reflected in the concentration of chlorophyll a and breakdown products in the sediment, with higher concentrations in spring and autumn following blooms, and lower concentrations in summer and winter. The taxonomic and trophic structure of nematode communities differed significantly among stations over relatively short distances, potentially masking some of the temporal dynamics. Spatio-temporal differences in nematode species composition were linked to changes in the quality and quantity of organic material reaching the seabed, reflecting a species-specific response to the nutritional quality of sedimenting organic material and the biochemical changes in the sediment associated with its decomposition. The size distributions of selected nematode species indicated that most species bred continuously throughout the sampling period, although one species, the epigrowth feeder Spilophorella paradoxa, had periods of increased growth following the deposition of the spring phytoplankton bloom. There was no consistent temporal relationship between the trophic composition of nematode communities and spring chlorophyll a or carbon sedimentation, most likely a result of the trophic plasticity of most feeding types and the capacity of the community to use both freshly sedimented material as well as the subsequent breakdown products and refractory organic matter. Community metrics implied that there were small responses to the seasonal production cycle, but these belied strong responses of a few species with life histories that allowed them to track the availability of suitable food resources.     

Habitat use patterns of the invasive red lionfish Pterois volitans: a comparison between mangrove and reef systems in San Salvador,Bahamas

The Indo‐Pacific red lionfish Pterois volitans is widespread both in its native and its non‐native habitats. The rapid invasion of this top predator has had a marked negative effect on fish populations in the Western Atlantic and the Caribbean. It is now well documented that lionfish are invading many tropical and sub‐tropical habitats. However, there are fewer data available on the change in lionfish abundance over time and the variation of body size and diet across habitats. A recent study in San Salvador, Bahamas, found body size differences between individuals from mangrove and reef systems. That study further suggested that ontogenetic investigation of habitat use patterns could help clarify whether lionfish are using the mangrove areas of San Salvador as nurseries. The aim of the present study is to determine temporal trends in lionfish relative abundance in mangrove and reef systems in San Salvador, and to further assess whether there is evidence suggesting an ontogenetic shift from mangroves to reef areas. Accordingly, we collected lionfish from mangrove and reef habitats and calculated catch per unit effort (a proxy for relative abundance), compared body size distributions across these two systems, and employed a combination of stable isotope, stomach content, and genetic analyses of prey, to evaluate differences in lionfish trophic interactions and habitat use patterns. Our results show that populations may have increased in San Salvador during the last 4 years, and that there is a strong similarity in body size between habitats, stark differences in prey items, and no apparent overlap in the use of habitat and/or food resources. These results suggest that there is not evidence an for ontogenetic shift from mangroves to reefs, and support other studies that propose lionfish are opportunistic forages with little movement across habitats.     

Mass,volume, and length relationships in plaice (Pleuronectes platessa L.) juveniles

The live body mass, body volume, and length were determined for four groups of juvenile plaice (Pleuronectes platessa L.): (1) plaice immigrating into the Wadden Sea, (2) fish that had settled in the Wadden Sea, (3) settled fish that had been starved, and (4) laboratory-reared fish. Mass and volume values were obtained by applying Archimedes' principle to weights of fish obtained while they were immersed in waters of different densities. The allometric relationship of mass, volume, and length was determined for each group using principal component analysis. Fish in each treatment group had different mass-volume-length trajectories. Immigrating fish had the least mass and volume at fixed length, followed by settled fish, and laboratory-reared fish had the greatest mass at fixed length. Mass and volume differences between freshly captured settled fish and starved fish were slight. All treatments showed great variability in body mass and volume at fixed length, and the use of fish length alone as an index of fish size is problematic. It is suggested that centroid size is a better measurement of fish size when size is an important variate in a study.     

Shoaling waves: A discussion

Surface gravity waves are commonly observed to slow down and to stop at a beach without any noticeable reflection taking place. We assume that as a consequence the waves are continuously giving up their linear and angular momenta, which they carry with them, along with energy, as they propagate into gradually decreasing mean depths of water. It takes a force to cause a time rate of decrease in the linear momentum and a torque to produce a time rate of decrease in the angular momentum. Both a force and a torque operate on the shoaling waves, due to the presence of the sloping bottom, to cause the diminution of their linear and angular momenta. By Newton’s third law, action equals reaction, an equal but opposite force and torque are exerted on the bottom. No other mechanisms for transferring linear and angular momenta are included in the model. Since the force on the waves acts over a horizontal distance during shoaling, work is done on the waves and energy flux is not conserved. Bottom friction, wave interaction with a mean flow, scattering from small-scale bottom irregularities and set-up are neglected. Mass flux is conserved, which leads to a shoreward monotonic decrease in amplitude consistent with available swell data. The formula for the time-independent force on the bottom agrees qualitatively with observations in seven different ways: four for swell attenuation and three for sediment transport on beaches. Ardhuin (2006) argues against a mean force on the bottom that is not hydrostatic, mainly by using conservation of energy flux. He also applies the action balance equation to shoaling waves. Action is a difficult concept to grasp for motion in a continuum; it cannot be easily visualized, and it is not really necessary for solving the shoaling wave problem. We prefer angular momentum because it is clearly related to the observed orbital motion of the fluid particles in progressive surface waves. The physical significance of wave action for surface waves has been described recently by showing that in deep water action is equivalent to the magnitude of the wave’s orbital angular momentum (Kenyon and Sheres, 1996). Finally, Ardhuin requires that there be a significant exchange of linear momentum between shoaling waves and an unspecified mean flow, although the magnitude and direction of the exchange are not predicted. No mention is made of what happens to the orbital angular momentum during shoaling. Mass flux conservation is not stated.     

Modelling Kepone in the striped bass food chain of the James River estuary

A mathematical model that computes the accumulation of Kepone in the striped bass food chain of the James River estuary was developed. The purpose of the model was to help understand the relationship of Kepone levels in important fish species to sediment and water column Kepone concentrations and then to address the question of why these levels still exceed Food and Drug Administration limits eight years after discharge ceased. The model considers exposure through diet and respiration at rates based on species bioenergetics. It was successfully calibrated to the Kepone concentrations observed in the period 1976 through 1982 in striped bass, white perch, and Atlantic croaker. The model indicates that for the upper levels of the food chain, diet is the major route of contamination, accounting for 87–88% of the observed concentration in croaker and white perch and 91% of the observed concentration in striped bass. The two Kepone sources; sediment and water column, contribute approximately equally to the croaker and white perch. The water column is more significant for striped bass, being the original source for approximately 60% of the observed body burdens. It was estimated that a criterion requiring Kepone concentrations in fish to be at or below 0·3 μg g^?1 would require dissolved water column and sediment Kepone concentrations to be reduced to somewhere between 3 and 9 ng l^?1 and 13–39 ng g^?1, respectively, depending on the species. Striped bass require the greatest reductions in dissolved water column and sediment Kepone concentrations to somewhere between 3 and 5 ng l^?1 and 13 and 24 ng g^?1, respectively.     

Analyses of stomach contents and stable isotopes reveal food sources of estuarine detritivorous fish in tropical/subtropical Taiwan

Detritivorous fish generally refers to fish that primarily ingest unidentified organic detritus. We analyzed stomach contents in combination with stable isotopes to trace and compare the food sources of the large-scale mullet Liza macrolepis and other detritivorous fish species in subtropical mangrove creeks and a tropical lagoon in Taiwan. The volume of organic detritus always contributed >50% of the stomach content of L. macrolepis in the two habitats. However, consumed items were distinct between the two habitats and corresponded to the types in which they reside. The consumed items in the lagoon were more diverse than those observed in the mangroves. In the mangroves, the diet composition of L. macrolepis was primarily determined by season, not by body size. In the lagoon, there were no clear seasonal or size-dependent grouping patterns for the diet composition. There were significant seasonal and spatial variations in δ¹³C and δ¹⁵N values of potential food sources and L. macrolepis. However, neither δ¹³C nor δ¹⁵N values of L. macrolepis were correlated with fish body size. Joint analyses of stomach contents and stable isotopes indicated that benthic microalgae on sediments were the most important assimilated food in both seasons for the dominant detritivorous fish in the mangroves, whereas a greater reliance on microalgal and macroalgal periphyton on oyster-culture pens was observed in the lagoon. Mangrove and marsh plants and phytoplankton, which are mostly locally produced within each habitat, were of minor importance in the assimilated food.     

Changes in body condition and fatty acid composition of wild Mediterranean horse mackerel (Trachurus mediterraneus, Steindachner, 1868) associated to sea cage fish farms

Net-cage fish farms attract a great number of wild fishes, altering their behaviour and possibly their physiology. Wild Mediterranean horse mackerel (Trachurus mediterraneus), sampled from populations aggregated around two Mediterranean fish farms and from two natural control populations, were analyzed for differences in body condition, stomach content and fatty acid composition. Pellets used to feed caged fish in both farms were also analyzed to identify their relationship with the fatty acid composition of tissue of wild fish. T. mediterraneus aggregated around the farms throughout the year although large seasonal changes in abundance and biomass occurred. Wild fish aggregated at farms mainly ate food pellets while control fish fed principally on juvenile fish and cephalopods. Wild fish that fed around the cages had a significantly higher body fat content than the control fish (7.30+/-1.8% and 2.36+/-0.7%, respectively). The fatty acid composition also differed between farm-associated and control fish, principally because of the significantly increased levels of linoleic (C18:2omega6) and oleic (C18:1omega9) acids and decreased docosahexaenoic acid (C22:6omega3) in farm-associated fish. The increased condition of wild fish associated with farms could increase the spawning ability of coastal fish populations, if wild fish are protected from fishing while they are present at farms. The fatty acids compositions could also serve as biomarkers to infer the influence of a fish farm on the local fish community, helping to better describe the environmental impact of fish farming.     

Saltwater sport fishing for food or income in the Northeastern US: Statistical estimates and policy implications

In the Northeast US fishery managers have attempted to control marine recreational fishing mortality through annual adjustments to the number and/or size of fish that can be kept. These measures, with a few exceptions, have generally failed to prevent recreational fishing mortality rates from exceeding annual target levels. In this study, we show that one of the reasons why keep limits may have failed is that a substantial number of anglers obtain little value from being able to keep self-caught fish. Our findings are based on a telephone survey administered to marine anglers in all of the coastal counties in the Northeast US in 2004/2005. To evaluate the importance of keeping self-caught fish, we provide estimates of the size of the marine angling population in the Northeast US that keeps fish for food or income and also for those that fish primarily for recreation and place little or no value on keeping fish. Demographic characteristics of the two groups of anglers are compared statistically and differences related to consumption of self-caught marine resources and to health warning advisories are discussed. We also estimate the size of the Northeast US angling population that relies on their self-caught marine resources as a cost-saving food source or as a supplement to household income. This information could improve the effectiveness of fisheries regulations and the ability of policy analysts to predict how anglers might be affected by proposed fishery management actions.     

海水实验围隔中放养罗非鱼的生态学效应

围隔实验和在围隔内进行的其他实验结果表明,台湾红罗非鱼(简称罗非鱼)对食物的选择性及其生态学效应与食物资源状况有关。放养罗非鱼的围隔中浮游植物生物量和生产力往往较高,但罗非鱼密度超过8000尾/hm2后可明显压制海洋原甲藻等大型鞭毛藻类。当罗非鱼食物丰富时其对围隔中桡足类的压制作用相对较弱,当其他食物资源缺乏时往往选择捕食个体较大的桡足类。放养罗非鱼对围隔水中氮浓度和COD的影响较小,但加快了磷的循环,罗非鱼密度超过8000尾/hm2的围隔中PO₄-P浓度明显高于对照围隔。     

Availability of cadmium and zinc from sewage sludge to the flounder, Platichthys flesus, via a marine food chain

This paper examines the potential availability to a demersal fish of cadmium and zinc associated with digested sewage sludge, via a food chain as well as directly from the sludge, and the tissue distribution and possible excretion of any accumulated cadmium and zinc. Radioactive tracer techniques were used in order to follow the food chain transfer of the metals. Flounder (Platichthys flesus) accumulated cadmium both directly from sludge (delivered in newly ingested unassimilated gutfuls in the amphipods) and in assimilated form from the tissues of the amphipod crustacean Corophium volutator that had been feeding on a sludge–sediment mixture. Cadmium from both sources could be excreted by the fish. The concentration of cadmium within the whole fish increased as the input of cadmium in the diet increased. Zinc, similarly, is available to the flounder both directly from sludge and from zinc accumulated in C. volutator. Only a limited increase in net accumulation of zinc by the flounder was observed upon increased inputs of zinc through the diet, perhaps indicating some regulation of body zinc concentration by the flounder.