Estimation of Oxygen Consumption Rate Using T-DO Diagram in the Benthic Layer of Ohmura Bay, Kyushu, Japan

We have observed the temporal variation of oxygen deficient water with short time scale (less than a few days) in the central area of Ohmura Bay, Kyushu, Japan, in summer, 1995 and 1996. The vertical profiles of temperature were similar to those of dissolved oxygen. We noticed a linear relation between temperature and dissolved oxygen in the bottom layer, and applied the T-DO relation to estimate the net oxygen consumption rate, rather than direct evaluation of the advection and diffusion. Oxygen consumption rate just above the bottom was estimated to be about 0.21 g O₂ m^–3day^–1 in July 1995, and about 0.28 g O₂ m^–3day^–1 in August 1996. The net oxygen consumption rate estimated for the bottom layer below the second thermocline was about 0.61 g O₂ m^–3day^–1 with variability from 0.55 to 0.66 g O₂ m^–3day^–1 during July 25 to 29, 1995. This is was about 0.64 g O₂ m^–3day^–1 with variability from 0.18 to 1.4 g O₂ m^–3day^–1 during August 22 to 30, 1996. The net oxygen consumption rates are about half of those measured with a closed system in the Seto Inland Sea.     

Vertical flux of biogenic matter during a Lagrangian study off the NW Spanish continental margin

Lagrangian experiments with short-term, drifting sediment traps were conducted during a cruise on RRS Charles Darwin to the NW coast of Spain to study the vertical flux and composition of settling biogenic matter. The cruise was split into two legs corresponding to (i) a period of increased production following an upwelling event on the continental shelf (3–10 August 1998) and (ii) an evolution of a cold water filament originating from the upwelled water off the shelf (14–19 August). The export of particulate organic carbon (POC) from the upper layer (0–60m) on the shelf was 90–240mgC.m⁻².d⁻¹ and off the shelf was 60–180mgC.m⁻².d⁻¹. Off shelf the POC flux at 200m was 50–60mg.m⁻².d⁻¹. A modest sedimentation of diatoms (15–30mgC.m⁻².d⁻¹) after the upwelling was associated with increased vertical flux of chlorophyll a (1.8–2.1mg.m⁻².d⁻¹) and a decrease of the POC:PON molar ratio of the settled material from 9 to 6.4. Most of the pico-, nano-, and microplankton in the settled material were flagellates; diatoms were significant during the on shelf and dinoflagellates during the off shelf leg. Off shelf, the exponential attenuation of POC flux indicated a strong retention capacity of the plankton community between 40 and 75m. POC:PON ratio of the settled particulate matter decreased with depth and the relative portion of flagellates increased, suggesting a novel, flagellate and aggregate mediated particulate flux in these waters. Export of POC from the euphotic layer comprised 14–26% of the integrated primary production per day during the on shelf leg and 25–42% during the off shelf leg, which characterises the importance of sedimentation in the organic carbon budget of these waters.     

Primary productivity in the fast ice area near syowa station,Antarctica, during spring and summer 1983/84

In situ measurements of the primary productivity of ice algae and phytoplankton were carried out in the fast ice area near Syowa Station (69°00S, 39°35E) during the austral spring and summer of 1983/84. Standing stock of ice algae reached a maximum of 45.1 mg chla m^–2 in late October. Phytoplankton standing stock attained a value of 3.57 mg chla m^–2 in mid-January. Primary production of ice algae in late October (7.64 mgC m^–2 hr^–1) was 14 times greater than that in mid-January (0.54 mgC m^–2 hr^–1). Production in the water column in mid-January (3.46 mgC m^–2 hr^–1) was 50 times greater than that in late October (0.07 mgC m^–2 hr^–1). These results indicate a substantial production by ice algae in the spring and by phytoplankton in the summer period.     

Seasonal variability of leaf litter removal by crabs in a Kandelia candel mangrove forest in Jiulongjiang Estuary, China

The seasonal variability of leaf litter removal by crabs was observed from May 2006 to April 2007 in a Kandelia candel mangrove forest in Jiulongjiang Estuary, China. Daily average quantities of leaf fall ranged 0.85–3.86 gDW m⁻² d⁻¹, with high values in May, August, October and November. The whole-year's leaf fall was 6.48 t ha⁻¹ yr⁻¹ (1.81 gDW m⁻² d⁻¹). The standing stock of leaf litter on the forest floor was 7.78 gDW m⁻² averaged from the whole year's data, with the lowest value in December (1.23 gDW m⁻²) and the highest in April (16.18 gDW m⁻²). Annually averaged removal (consumption on mangrove floor + burial in burrows) rate of leaf litter by crabs was 0.59 gDW m⁻² d⁻¹. High seasonal variability was observed in the removal rates of leaf litter by crabs. Removal rates in the winter months (December, January and February) were 0.07–0.09 gDW m⁻² d⁻¹, much lower than those in other months with values of 0.59–1.18 gDW m⁻² d⁻¹. Annually averaged percentage of leaf fall removed by crabs was 33%, with the highest values in September (reached 76%) and the lowest values in winter months. Of leaf litter removed by crabs, a large proportion was buried by crabs, and only 12% was consumed by crabs on the forest floor. Leaf litter removal rate, consumption rate on the forest floor, percentages of leaf fall and standing stock removed on the forest floor were significantly positively correlated with air temperature, indicating that leaf removal ability by crabs was higher in warm months than in cold months.     

Seasonal changes in submarine groundwater discharge to coastal salt ponds estimated using Ra and Ra as tracers

Submarine groundwater discharge (SGD) to coastal southern Rhode Island was estimated from measurements of the naturally-occurring radioisotopes ²²⁶Ra (t_1/2 = 1600 y) and ²²⁸Ra (t_1/2 = 5.75 y). Surface water and porewater samples were collected quarterly in Winnapaug, Quonochontaug, Ninigret, Green Hill, and Pt. Judith–Potter Ponds, as well as nearly monthly in the surface water of Rhode Island Sound, from January 2002 to August 2003; additional porewater samples were collected in August 2005. Surface water activities ranged from 12–83 dpm 100 L^− 1 (60 dpm = 1 Bq) and 21–256 dpm 100 L^− 1 for ²²⁶Ra and ²²⁸Ra, respectively. Porewater ²²⁶Ra activities ranged from 16–736 dpm 100 L^− 1 (2002–2003) and 95–815 dpm 100 L^− 1 (2005), while porewater ²²⁸Ra activities ranged from 23–1265 dpm 100 L^− 1. Combining these data with a simple box model provided average ²²⁶Ra-based submarine groundwater fluxes ranging from 11–159 L m^− 2 d^− 1 and average ²²⁸Ra-derived fluxes of 15–259 L m^− 2 d^− 1. Seasonal changes in Ra-derived SGD were apparent in all ponds as well as between ponds, with SGD values of 30–472 L m^− 2 d^− 1 (Winnapaug Pond), 6–20 L m^− 2 d^− 1 (Quonochontaug Pond), 36–273 L m^− 2 d^− 1 (Ninigret Pond), 29–76 L m^− 2 d^− 1 (Green Hill Pond), and 19–83 L m^− 2 d^− 1 (Pt. Judith–Potter Pond). These Ra-derived fluxes are up to two orders of magnitude higher than results predicted by a numerical model of groundwater flow, estimates of aquifer recharge for the study period, and values published in previous Ra-based SGD studies in Rhode Island. This disparity may result from differences in the type of flow (recirculated seawater versus fresh groundwater) determined using each technique, as well as variability in porewater Ra activity.     

Circulation and mixing at the New England shelfbreak front: Results of purposeful tracer experiments

We present the results of six dye tracer experiments that measured the mixing and circulation at the shelfbreak front on the New England Shelf. The last three were conducted during the New England Shelfbreak Productivity Experiment (NESPEX) with concurrent isopycnal float deployments. The results are consistent with the Chapman and Lentz [Chapman, D.C., and Lentz, S.J. (1994). Trapping of a coastal density front by the bottom boundary layer. Journal of Physical Oceanography, 24, 1465–1479.] model prediction of the separation and upwelling along the shelfbreak front of bottom boundary layer (BBL) water forced by an Ekman buoyancy flux, but show considerable variability. Cross-shelf velocities at the detachment point are 2–3 × 10⁻² m/s. But seaward, over the slope region, dye tagged water was sheared from the main patch into small filaments that upwelled along the front with cross-shelf speeds up to 0.1 m/s. Cross-shelf diffusion was of order 10 m²/s in the mixed bottom layer and 1 m²/s in the interior along the front. Within the stratified front, the mean vertical diffusivity was K_z  4 × 10⁻⁶ m²/s. The dispersion of shelfwater in the slope region is effected by turbulent flow with advective speeds exceeding the small scale diffusive mixing. The mean flux of the detached BBL water is sufficient to account for the net loss of shelf water during its transit from Cape Cod to Cape Hatteras.     

Southwest Pacific subtropical mode water: A climatology

The large-scale distribution and changes in Southwest Pacific subtropical mode water (STMW) are investigated and discussed. The paper presents for the first time geographic maps showing the spatial distribution of STMW thicknesses, with a vertical temperature gradient <2.0 °C/100 m occupying the 14–20 °C range below the mixed layer depth, across the entire Southwest Pacific region. STMW changes in areal thickness extent, vertical cross-sectional area along selected transects, and total volume, are examined on seasonal and interannual time scales between 1973 and 1988.We find that STMW extends across the entire width of the Tasman Sea in a very broad swath between the Tropical Convergence in the north (just to the south of New Caledonia), the southeast Australian coast in the west to as far south as 39°S (likely due to the southward extension of the EAC), and eastwards along the Southern STMW boundary in a meandering pathway that broadly follows the Tasman Front. The total STMW volume across the region (i.e., west of 180°) varies seasonally by a factor of more than three between the estimated maximum of 6.6 (±0.5) × 10¹⁴ m³ in October and minimum of 1.9 (±0.4) × 10¹⁴ m³ in May. Interannual variations O (±0.5 × 10¹⁴ m³) are also observed in the spatial extent of the thick mode water and its total volume. El Niño composite maps show an anomalous thickening of the STMW during the El Niño year with October positive thickness anomalies in excess of +20 m (total volume anomaly of +0.6 × 10¹⁴ m³) manifested throughout the subtropical gyre interior as far north as New Caledonia. Total volume anomalies tend to be positive from January of the El Niño year through to the July following (18 months). The maximum correlation coefficient r = −0.3 between 3-monthly STMW volume anomalies and the Southern Oscillation index is statistically significant at the 95% confidence level. We conclude that during the anomalous cooling of the upper Southwest Pacific Ocean in the El Niño year, winter-time convection and STMW formation is enhanced across the region resulting in an El Niño – Southern Oscillation climate signal that is identifiable below the mixed layer by the increased STMW volume which persists through to the following winter. Finally, some evidence for the possible decadal modulation of the STMW variability is also discussed.     

Spatio-temporal distribution of dissolved inorganic carbon and net community production in the Chukchi and Beaufort Seas

As part of the 2002 Western Arctic Shelf–Basin Interactions (SBI) project, spatio-temporal variability of dissolved inorganic carbon (DIC) was employed to determine rates of net community production (NCP) for the Chukchi and western Beaufort Sea shelf and slope, and Canada Basin of the Arctic Ocean. Seasonal and spatial distributions of DIC were characterized for all water masses (e.g., mixed layer, halocline waters, Atlantic layer, and deep Arctic Ocean) of the Chukchi Sea region during field investigations in spring (5 May–15 June 2002) and summer (15 July–25 August 2002). Between these periods, high rates of phytoplankton production resulted in large drawdown of inorganic nutrients and DIC in the Polar Mixed Layer (PML) and in the shallow depths of the Upper Halocline Layer (UHL). The highest rates of NCP (1000–2850 mg C m⁻² d⁻¹) occurred on the shelf in the Barrow Canyon region of the Chukchi Sea and east of Barrow in the western Beaufort Sea. A total NCP rate of 8.9–17.8×10¹² g for the growing season was estimated for the eastern Chukchi Sea shelf and slope region. Very low inorganic nutrient concentrations and low rates of NCP (<15–25 mg C m⁻² d⁻¹) estimated for the mixed layer of the adjacent Arctic Ocean basin indicate that this area is perennially oligotrophic.     

Seasonal and daily variation of mercury evasion at coastal and off shore sites from the Mediterranean Sea

Dissolved gaseous mercury (DGM) was measured continuously using two newly developed techniques and a manual technique. The continuous techniques were based on the equilibrium between the aqueous and gaseous phase (DGM = Hg_extr / H', Hg_extr is the measured mercury concentration in the gas phase, H' is the Henry's Law coefficient at the desired temperature). In order to calculate the annual mercury evasion from the Mediterranean Sea, diurnal and seasonal measurements of DGM, total gaseous mercury in air (TGM), water temperature and wind speed were performed. During August 2003, March–April 2004 and October–November 2004 measurements of these parameters were conducted on board the RV Urania. The continuous measurements of DGM showed a diurnal variation in concentration, at both coastal and off shore sites, with higher concentrations during daytime than nighttime. The concentration difference could be as large as 130 fM between day and night. The degree of saturation was calculated directly from the measurements, S = Hg_extr / TGM and was found to vary between the different seasons. The highest average degree of saturation (850%) and the largest variation in saturation (600–1150%) was observed during the summer. The spring showed the lowest variation (260–360%) and the lowest average degree of saturation (320%). The autumn also showed a large variation in saturation (500–1070%) but a lower average (740%) compared to the summer cruise. This might be explained by the temperature difference between the different seasons, since that parameter varied the most. The flux from the sea surface was calculated using the gas exchange model developed by Nightingale et al. [Nightingale, P.D., Malin, G., Law, C.S., Watson, A.J., Liss, P.S., Liddicoat, M.I., Boutin, J., Upstill-Goddard, R. C., 2000. In situ evaluation of air–sea gas exchange parameterization using novel conservative and volatile tracers. Global Biogeochemical Cycles, 14(1):373–387]. The evasion varied between the different seasons with the highest evasion during the autumn, 24.6 pmol m^− 2 h^− 1. The summer value was estimated to 22.3 pmol m^− 2 h^− 1 and the spring to 7.6 pmol m^− 2 h^− 1. Using this data the yearly evasion from the Mediterranean Sea surface was estimated to 77 tons.     

Diurnal changes in the bio-optical properties of the phytoplankton in the Alborán Sea (Mediterranean Sea)

The changes in the phytoplankton absorption properties during a diurnal cycle were investigated at one station located in the north-western area of the Alborán Sea. The experiment was performed in spring when the water column was strongly stratified. This hydrological situation permitted the establishment of a deep chlorophyll a (chl a) fluorescence maximum (DFM) which was located on average close to the lower limit of the mixed layer and the nutricline. The relative abundance of pico-phytoplankton (estimated as its contribution to the total chl a) was higher in the surface, however, micro-phytoplankton dominated the community at the DFM level. Chl a specific absorption coefficient (a*(λ)) also varied with optical depth, with a* (the spectrally average specific absorption coefficient) decreasing by 30% at the DFM depth with respect to the surface. A significant negative correlation between the contribution of the micro-phytoplankton to the total chl a and a* was obtained indicating that a* reduction was due to changes in the packaging effect. Below the euphotic layer, a* increased three-fold with respect to the DFM, which agrees with the expected accumulation of accessory pigments relative to chl a as an acclimation response to the low available irradiance. The most conspicuous change during the diurnal cycle was produced in the euphotic layer where the chl a concentration decreased significantly in the afternoon (from a mean concentration of 1.1 μg L⁻¹ to 0.7 μg L⁻¹) and increased at dusk when it averaged 1.4 μg L⁻¹. In addition, a* and the blue-to-red absorption band ratio increased in the afternoon. These results suggest that a*(λ) diurnal variability was due to increase in photo-protective and accessory pigments relative to chl a. The variation ranges of a*(λ) at 675 and 440 nm (the absorption peaks in the red and blue spectral bands, respectively) in the euphotic layer were 0.01–0.04 and 0.02–0.10 m² mg⁻¹ chl a, respectively. Approximately 30% out of this variability can be attributed to the diurnal cycle. This factor should therefore be taken into account in refining primary production models based on phytoplankton light absorption.     

Phytoplankton productivity in the western subarctic gyre of the North Pacific in early summer 2006

We deployed a profiling buoy system incorporating a fast repetition rate fluorometer in the western subarctic Pacific and carried out time-series observations of phytoplankton productivity from 9 June to 15 July 2006. The chlorophyll a (Chl a) biomass integrated over the euphotic layer was as high as 45–50 mg Chl a m⁻² in the middle of June and remained in the 30–40 mg Chl a m⁻² range during the rest of observation period; day-to-day variation in Chl a biomass was relatively small. The daily net primary productivity integrated over the euphotic layer ranged from 144 to 919 mg C m⁻² day⁻¹ and varied greatly, depending more on insolation rather than Chl a biomass. In addition, we found that part of primary production was exported to a 150-m depth within 2 days, indicating that the variations in primary productivity quickly influenced the organic carbon flux from the upper ocean. Our results suggest that the short-term variability in primary productivity is one of the key factors controlling the carbon cycle in the surface ocean in the western subarctic Pacific.     

The carbon dioxide system and net community production within a cyclonic eddy in the lee of Hawaii

The dynamics of dissolved inorganic carbon (DIC) and processes controlling net community production (NCP) were investigated within a mature cyclonic eddy, Cyclone Opal, which formed in the lee of the main Hawaiian Islands in the subtropical North Pacific Gyre. Within the eddy core, physical and biogeochemical properties suggested that nutrient- and DIC-rich deep waters were uplifted by 80 m relative to surrounding waters, enhancing biological production. A salt budget indicates that the eddy core was a mixture of deep water (68%) and surface water (32%). NCP was estimated from mass balances of DIC, nitrate+nitrite, total organic carbon, and dissolved organic nitrogen, making rational inferences about the unobserved initial conditions at the time of eddy formation. Results consistently suggest that NCP in the center of the eddy was substantially enhanced relative to the surrounding waters, ranging from 14.1±10.6 (0–110 m: within the euphotic zone) to 14.2±9.2 (0–50 m: within the mixed layer) to 18.5±10.7 (0–75 m: within the deep chlorophyll-maximum layer) mmol C m⁻² d⁻¹ depending on the depth of integration. NCP in the ambient waters outside the eddy averaged about 2.37±4.24 mmol C m⁻² d⁻¹ in the mixed layer (0–95 m). Most of the enhanced NCP inside the eddy appears to have accumulated as dissolved organic carbon (DOC) rather than exported as particulate organic carbon (POC) to the mesopelagic. Our results also suggest that the upper euphotic zone (0–75 m) above the deep chlorophyll maximum is characterized by positive NCP, while NCP in the lower layer (>75 m) is close to zero or negative.     

Surface boundary-layer variability off Northern California, USA, during upwelling

A five-element mooring array is used to study surface boundary-layer transport over the Northern California shelf from May to August 2001. In this region, upwelling favorable winds increase in strength offshore, leading to a strong positive wind stress curl. We examine the cross-shelf variation in surface Ekman transport calculated from the wind stress and the actual surface boundary-layer transport estimated from oceanic observations. The two quantities are highly correlated with a regression slope near one. Both the Ekman transport and surface boundary layer transport imply curl-driven upwelling rates of about 3×10⁻⁴ m s⁻¹ between the 40 and 90 m isobaths (1.5 and 11.0 km from the coast, respectively) and curl-driven upwelling rates about 1.5×10⁻⁴m s⁻¹ between the 90 and 130 m isobaths (11.0 and 28.4 km from the coast, respectively). Thus curl-driven upwelling extends to at least 25 km from the coast. In contrast, upwelling driven by the adjustment to the coastal boundary condition occurs primarily inshore of the 40-m isobath. The upwelling rates implied by the differentiating the 40-m transport observations with the coastal boundary condition are up to 8×10⁻⁴ m s⁻¹. The estimated upwelling rates and the temperature–nitrate relationship imply curl-driven vertical nitrate flux divergences are about half of those driven by coastal boundary upwelling.     

Mesozooplankton dynamics in nearshore waters of the Great Barrier Reef

Zooplankton dynamics (community composition, juvenile somatic growth rate, adult egg production, secondary production) were studied in coastal waters of the Great Barrier Reef. Two sectors were compared, one adjacent to a catchment of near-pristine land use patterns, the other to a more intensively farmed catchment. Sampling was conducted in the austral winter (August) and summer (January–March) of two succeeding years. Gradients in zooplankton community composition were weak, with only moderate effects of season and sector. Overall, 37% of zooplankton biomass was in the 73–150 μm size fraction, 26% in the 150–350 μm fraction, and 38% was >350 μm. There was no biomass difference and only small differences in community composition between samples taken during the day and at night; ostracods and large calanoid copepods were occasionally more common at night. Carbon-specific growth rates averaged 0.29 d⁻¹ for cyclopoid copepods and 0.35 d⁻¹ for calanoid copepods, with no difference between sectors. Calanoid copepod growth showed a significant relationship to chlorophyll concentration, but cyclopoid copepods did not. Copepod egg production was low (7.9 ± 5.9 eggs female⁻¹ d⁻¹) and apparently food-limited. Copepod secondary production was lower in August (mean = 2.6, range 1.4–4.0 mg C m⁻² d⁻¹) than in January–March (mean = 8.5, range 2.4–15.5 mg C m⁻² d⁻¹). Secondary production by mesozooplankton in the 73–100 μm size range averaged 0.9% of total phytoplankton production.     

Remotely sensed sea-surface chlorophyll and POC flux at Deep Gulf of Mexico Benthos sampling stations

Biweekly composite averages of the standing stock of sea-surface chlorophyll (SSC) were derived from SeaWiFS satellite ocean-color data at 44 benthic sampling stations occupied along the continental slope and rise by the Deep Gulf of Mexico Benthos (DGoMB) program. At the 22 DGoMB sites north of 26°N and west of 91°W in the NW Gulf of Mexico, annual average SSC was 0.19 mg m⁻³, ranging at most locations from annual highs of about 0.3 mg m⁻³ in November–February to lows of about 0.1 mg m⁻³ in May–August. Comparison of three years of SeaWiFS data (January 1998–December 2000) showed little inter-annual variation at these NW Gulf stations. In contrast, at the 22 NE Gulf sites north of 26°N and east of 91°W, SSC averaged 2.8 times higher than in the NW Gulf, showing also strong inter-annual variation. Maxima in the NE region occurred in November–February and also during summers. The summer maxima were associated with Mississippi River water transported offshore to the east and southward by anticyclonic eddies in the NE Gulf. The apparent increases in SSC in June–August at NE Gulf stations reached average monthly concentrations >50% greater than in November–February. Based on a primary productivity model and a vertical flux model, the calculated export of particulate organic carbon (POC flux reaching the seafloor) was estimated as 18 mg C m⁻² day⁻¹ at the 22 NE Gulf stations, and 9 mg C m⁻² day⁻¹ at the 22 NW Gulf stations. These estimates are comparable to fluxes measured by benthic lander by others in the DGoMB program, which may drive the differences in west versus east bathymetric zonation and community structure of macrobenthos that were sampled with large box corers by others in the DGoMB program.     

Influence of basin-scale and mesoscale physical processes on biological productivity in the Bay of Bengal during the summer monsoon

Physical forcing plays a major role in determining biological processes in the ocean across the full spectrum of spatial and temporal scales. Variability of biological production in the Bay of Bengal (BoB) based on basin-scale and mesoscale physical processes is presented using hydrographic data collected during the peak summer monsoon in July–August, 2003. Three different and spatially varying physical processes were identified in the upper 300 m: (I) anticyclonic warm gyre offshore in the southern Bay; (II) a cyclonic eddy in the northern Bay; and (III) an upwelling region adjacent to the southern coast. In the warm gyre (>28.8 °C), the low salinity (33.5) surface waters contained low concentrations of nutrients. These warm surface waters extended below the euphotic zone, which resulted in an oligotrophic environment with low surface chlorophyll a (0.12 mg m⁻³), low surface primary production (2.55 mg C m⁻³ day⁻¹) and low zooplankton biovolume (0.14 ml m⁻³). In the cyclonic eddy, the elevated isopycnals raised the nutricline upto the surface (NO₃–N > 8.2 μM, PO₄–P > 0.8 μM, SiO₄–Si > 3.5 μM). Despite the system being highly eutrophic, response in the biological activity was low. In the upwelling zone, although the nutrient concentrations were lower compared to the cyclonic eddy, the surface phytoplankton biomass and production were high (Chl a – 0.25 mg m⁻³, PP – 9.23 mg C m⁻³ day⁻¹), and mesozooplankton biovolume (1.12 ml m⁻³) was rich. Normally in oligotrophic, open ocean ecosystems, primary production is based on ‘regenerated’ nutrients, but during episodic events like eddies the ‘production’ switches over to ‘new production’. The switching over from ‘regenerated production’ to ‘new production’ in the open ocean (cyclonic eddy) and establishment of a new phytoplankton community will take longer than in the coastal system (upwelling). Despite the functioning of a cyclonic eddy and upwelling being divergent (transporting of nutrients from deeper waters to surface), the utilization of nutrients leading to enhanced biological production and its transfer to upper trophic levels in the upwelling region imply that the energy transfer from primary production to secondary production (mesozooplankton) is more efficient than in the cyclonic eddy of the open ocean. The results suggest that basin-scale and mesoscale processes influence the abundance and spatial heterogeneity of plankton populations across a wide spatial scale in the BoB. The multifaceted effects of these physical processes on primary productivity thus play a prominent role in structuring of zooplankton communities and could consecutively affect the recruitment of pelagic fisheries.     

Ventilation of the North Pacific subtropical pycnocline and mode water formation

The annual subduction rate of the North Pacific was calculated based on isopycnally averaged hydrographic climatology (HydroBase), high-resolution winter mixed-layer climatology (NWMLC), and various wind stress climatologies from ship reports, numerical weather prediction products, and satellite products. The calculation was performed using Lagrangian coordinates in the same manner as in previous works, except a less smoothed oceanic climatology (HydroBase and NWMLC) was used instead of a World Ocean Atlas. Differences in the wind stress climatologies have very little effect on subduction rate estimates. The subduction rate census for density classes showed peaks corresponding to subtropical mode water (STMW), central mode water (CMW), and eastern subtropical mode water (ESTMW). The deeper mixed layer and the associated sharper mixed-layer fronts in the present climatology resulted in a larger lateral induction, which boosted the subduction rate, especially for the potential density anomaly (σ_θ) range of the lighter STMW (25.0 < σ_θ < 25.2 kg m⁻³) and lighter CMW (26.0 < σ_θ < 26.2 kg m⁻³), compared to previous estimates. The renewal time of permanent pycnocline water was estimated as the volume of water divided by the subduction rate for each σ_θ class: 2–4 years for ESTMW (24.5 < σ_θ < 25.2 kg m⁻³), 2 years for the lighter STMW (25.0 < σ_θ < 25.3 kg m⁻³), 5–9 years for the denser STMW (25.3 < σ_θ < 25.6 kg m⁻³), 10–20 years for the lighter CMW (26.0 < σ_θ < 26.2 kg m⁻³), 20–30 years for the middle CMW (26.2 < σ_θ < 26.3 kg m⁻³), and 60 years or longer for the denser CMW (26.3 < σ_θ < 26.6 kg m⁻³). A comparison of the water volume and subduction rate in potential temperature–salinity (θ–S) space indicated that the upper permanent pycnocline water (25.0 < σ_θ < 26.2 kg m⁻³) was directly maintained by nondiffusive subduction of winter surface water, including STMW and lighter CMW. The lower permanent pycnocline water (26.2 < σ_θ < 26.6 kg m⁻³) may be maintained through the subduction of fresher and colder water from the subarctic–subtropical transition region and subsequent mixing with saltier and warmer water. Diagnosis of the potential vorticity (PV) of the subducted water demonstrated that the low PV of STMW was mainly due to the large subduction rate, whereas that of both ESTMW and CMW was due mainly to the small density advection rate (cross-isopycnal flow). Additionally, a relatively large subduction rate probably contributes to the low PV of part of the lighter CMW (ESTMW) formed in the region around 38°N and 170°W (28°N and 145°W), which is characterized by a relatively thick winter mixed layer and an associated mixed-layer front, causing a large lateral induction rate.     

Factors influencing benthic bacterial abundance, biomass, and activity on the northern continental margin and deep basin of the Gulf of Mexico

As part of a larger project on the deep benthos of the Gulf of Mexico, an extensive data set on benthic bacterial abundance (n>750), supplemented with cell-size and rate measurements, was acquired from 51 sites across a depth range of 212–3732 m on the northern continental slope and deep basin during the years 2000, 2001, and 2002. Bacterial abundance, determined by epifluorescence microscopy, was examined region-wide as a function of spatial and temporal variables, while subsets of the data were examined for sediment-based chemical or mineralogical correlates according to the availability of collaborative data sets. In the latter case, depth of oxygen penetration helped to explain bacterial depth profiles into the sediment, but only porewater DOC correlated significantly (inversely) with bacterial abundance (p<0.05, n=24). Other (positive) correlations were detected with TOC, C/N ratios, and % sand when the analysis was restricted to data from the easternmost stations (p<0.05, n=9–12). Region-wide, neither surface bacterial abundance (3.30–16.8×10⁸ bacteria cm⁻³ in 0–1 cm and 4–5 cm strata) nor depth-integrated abundance (4.84–17.5×10¹³ bacteria m⁻², 0–15 cm) could be explained by water depth, station location, sampling year, or vertical POC flux. In contrast, depth-integrated bacterial biomass, derived from measured cell sizes of 0.027–0.072 μm³, declined significantly with station depth (p<0.001, n=56). Steeper declines in biomass were observed for the cross-slope transects (when unusual topographic sites and abyssal stations were excluded). The importance of resource changes with depth was supported by the positive relationship observed between bacterial biomass and vertical POC flux, derived from measures of overlying productivity, a relationship that remained significant when depth was held constant (partial correlation analysis, p<0.05, df=50). Whole-sediment incubation experiments under simulated in situ conditions, using ³H-thymidine or ¹⁴C-amino acids, yielded low production rates (5–75 μg C m⁻² d⁻¹) and higher respiration rates (76–242 μg C m⁻² d⁻¹), with kinetics suggestive of resource limitation at abyssal depths. Compared to similarly examined deep regions of the open ocean, the semi-enclosed Gulf of Mexico (like the Arabian Sea) harbors in its abyssal sediments a greater biomass of bacteria per unit of vertically delivered POC, likely reflecting the greater input of laterally advected, often unreactive, material from its margins.     

Amphipod prey of gray whales in the northern Bering Sea: Comparison of biomass and distribution between the 1980s and 2002–2003

The ampeliscid amphipod community in the Chirikov Basin of the northern Bering Sea was a focus of study during the 1980s because they were a major food for the Eastern North Pacific (ENP) population of gray whales Eschrichtius robustus. Information from the 1980s benthic investigations, published accounts of ENP gray whale population trends and the occurrence in 1999–2000 of an unusual number of gray whale mortalities prompted concern that the whale population may have exceeded the carrying capacity of its food base. Therefore, during two cruises per year between June and September, 2002 and 2003, we resampled the 20 stations occupied during the 1980s, to determine if there had been any significant changes in ampeliscid abundance and biomass. During 2002–2003, average ampeliscid dry weight biomass was about 28±10 g m⁻² (95% confidence interval), a decline of nearly 50% from maximum values in the 1980s. Amphipod length measurements indicated that the declines were due mainly to the absence of the larger animals (20–30 mm length). Two hypotheses were considered regarding the amphipod declines: gray whale predation and climate. Ampeliscid production (105 kcal m⁻² yr⁻¹) and gray whale energy requirements (1.6×10⁸ kcal individual⁻¹ yr⁻¹) indicated that as little as 3–6% of the current estimate of the ENP gray whale population could remove 10–20% of the annual ampeliscid production from the study site in 2002–2003, a finding consistent with the hypothesis that top-down control by foraging whales was the primary cause of the observed declines. A 10-yr time series of temperature near the bottom in the Bering Strait and northward transport did not reveal a consistent trend between 1990 and 2001, suggesting that climate influences were not the major cause of the observed declines. Arctic ampeliscids have slow growth rates and long generation times; therefore the ampeliscid community may require decades to recover to densities observed in the 1980s. Predicted warming trends in the northern Bering Sea could impact ampeliscid recovery by lowering primary production or altering the community composition of the benthos.     

Production, retention and export of zooplankton faecal pellets on and off the Iberian shelf, north-west Spain

Vertical distribution of faecal pellets (FP), their sedimentation and the production rates of FP by mesozooplankton were studied during a cruise on and off the Iberian shelf in August 1998. The cruise was divided into two legs, each of them a short-term Lagrangian drift experiment. FP were collected with water bottles, with drifting sediment traps and during experiments carried out onboard the ship. The pellets were enumerated and their biovolumes and carbon contents (FPC) were calculated.The standing stock of FP in the upper 50 m was on average three times higher during the first on-shelf experiment than during the second off-shelf experiment. There were large diurnal variations, but no clear pattern emerged between day and night sampling. The vertical export of FPC from the upper, productive layer was on average one order of magnitude greater on the shelf (range 6–160 mg.m⁻².d⁻¹) compared to the off-shelf experiment (range 1–30 mg.m⁻².d⁻¹). FPC sedimentation explained 20% of the total POC export from the euphotic layer on the shelf, but <5% off the shelf. FP sedimentation was dominated by medium-sized cylindrical pellets (40–60 μm in diameter), but larger cylindrical pellets (60–100 μm in diameter) also played an important role. The smaller FP size fractions were never of any significance, in spite of the high abundance of smaller calanoid and cyclopoid copepods. The community production of FPs by mesozooplankton were calculated for the off shelf stations, and the average retention potential of FP in the upper 200 m was estimated to be 98%. Thus retention processes are clearly important for cross-shelf advection of FPs, their injection into the deep ocean and in the regulation of pelagic benthic coupling.